RchiOBHm_Chr7g0210901

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000147
Physical Location & Seq
Forward (+)
28271819 .. 28275215
3397 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18871

Sequence Viewer

Length: 972 bp
ATGGAGATAAAAAATTGCCTCTTAAAGCTAGACGAACTCCAAGCTTCTGCTCCTTTTACAAGCACGGAACAGCAACTGGAAATTATGGAGAAAATAAGTTCTCTCTGGAGGATTGAGGAACAATACTGGCATCAAATGTCCAGAATCAATTGGCTCAAGGTGGGAGATTCAAACTCACGGTTCTTTCATCTGACTACGATCCATCGTAGACAAAGAAACCGAATTTTGAAAATCCAAAATGATGCGGAAGTGTGGGTTGCTGGAGAAAAAAATATAAGAAGGGAGTTTGAAACACAATTCAAGGCTGTTTTCAAGAGCCAAGGACCTCAGAGTTGGGGAAATGCTTTATCTGGAGTTAATTGCTTGGTATCTGCTGAAATGAACAGTAGCTTATCTGCCCCTTTTACCATCGAGGAAGTGAAGGAGGCTGTGTTTCAATTGGGTGCCTTGAAAGCACCTGGACCGGATGGTTTTCCAGGACTTTTTTACCACAAGTATTGGAGTACGGTGAATGAGGTGGTTGTTGCAGCCTCGAAGGAATTTGGTGCAAACACAGCAAGGCTTCATTCTCTAAATAGGACTCATATTGCCCTAATTCCAAAGGTTCCAAATCCTGAGAAGACTACACAGTTTAGGCCTATTAGTCTGTGCAATAATTCTTACAAGATCCTCTCAAAGCTGCTAGCAAATAGACTAAAGGCAATTCTCCCCCATATCATCTCCACAAATCAAAATGCTTTTGTTCCTGATAGGAAAATACAAGACAATCTTATGCTAGCACACGAGACTTACCACTATCTTCGTTTGAAGAGAGAGGGTGGAAATCATGAGTTTGGCCTCAAGCTTGATATGAATAAAGCTTATGACAGAGTAGAGTGGGACTTCTTGGAGGCGGCTTTACTAAAATTTGGGTTCTCTAGAGGATGGGTAAACCTGATCATGAGCTGTGTGTCTACTGTATCTTCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

323

Amino Acids

37.04

Weight (kDa)

9.25

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 206 - 314 3.7e-15 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 443
AccI GTMKAC 2 cut(s) 208, 953
AciI CCGC 2 cut(s) 245, 893
AclWI GGATC 2 cut(s) 193, 661
AcsI RAATTY 3 cut(s) 222, 539, 905
AfaI GTAC 1 cut(s) 505
AgsI TTSAA 8 cut(s) 171, 229, 290, 301, 313, 437, 451, 808
AjnI CCWGG 2 cut(s) 457, 475
AluBI AGCT 7 cut(s) 28, 44, 390, 679, 844, 860, 945
AluI AGCT 7 cut(s) 28, 44, 390, 679, 844, 860, 945
Alw26I GTCTC 1 cut(s) 779
AlwI GGATC 2 cut(s) 193, 661
AlwNI CAGNNNCTG 1 cut(s) 76
AoxI GGCC 2 cut(s) 635, 835
ApeKI GCWGC 2 cut(s) 527, 679
ApoI RAATTY 3 cut(s) 222, 539, 905
AspS9I GGNCC 2 cut(s) 323, 461
AsuHPI GGTGA 1 cut(s) 520
AsuNHI GCTAGC 2 cut(s) 682, 775
AvaII GGWCC 2 cut(s) 323, 461
BanI GGYRCC 1 cut(s) 443
BauI CACGAG 1 cut(s) 782
BbsI GAAGAC 1 cut(s) 626
BbvI GCAGC 2 cut(s) 539, 666
BccI CCATC 4 cut(s) 210, 416, 461, 918
BciT130I CCWGG 2 cut(s) 459, 477
BclI TGATCA 1 cut(s) 936
BcoDI GTCTC 1 cut(s) 779
BfaI CTAG 4 cut(s) 29, 683, 776, 918
BisI GCNGC 3 cut(s) 528, 680, 894
BlsI GCNGC 3 cut(s) 529, 681, 895
Bme1390I CCNGG 2 cut(s) 459, 477
Bme18I GGWCC 2 cut(s) 323, 461
BmgT120I GGNCC 2 cut(s) 323, 461
BmiI GGNNCC 2 cut(s) 445, 606
BmrFI CCNGG 2 cut(s) 459, 477
BmsI GCATC 2 cut(s) 139, 232
BmtI GCTAGC 2 cut(s) 686, 779
BpiI GAAGAC 1 cut(s) 626
BpmI CTGGAG 3 cut(s) 127, 282, 372
BpuEI CTTGAG 2 cut(s) 140, 824
BsaJI CCNNGG 1 cut(s) 319
BsaWI WCCGGW 1 cut(s) 463
BsaXI ACNNNNNCTCC 2 cut(s) 416, 446
Bse1I ACTGG 2 cut(s) 81, 131
BseBI CCWGG 2 cut(s) 459, 477
BseDI CCNNGG 1 cut(s) 319
BseGI GGATG 2 cut(s) 472, 929
BseMII CTCAG 2 cut(s) 341, 606
BseNI ACTGG 2 cut(s) 81, 131
BseXI GCAGC 2 cut(s) 539, 666
BshFI GGCC 2 cut(s) 637, 837
BshNI GGYRCC 1 cut(s) 443
BsiSI CCGG 1 cut(s) 464
BslFI GGGAC 1 cut(s) 893
BsmAI GTCTC 1 cut(s) 779
BsmFI GGGAC 1 cut(s) 893
BsnI GGCC 2 cut(s) 637, 837
Bsp143I GATC 3 cut(s) 198, 666, 936
BspACI CCGC 2 cut(s) 245, 893
BspANI GGCC 2 cut(s) 637, 837
BspCNI CTCAG 2 cut(s) 340, 607
BspHI TCATGA 2 cut(s) 826, 939
BspLI GGNNCC 2 cut(s) 445, 606
BspOI GCTAGC 2 cut(s) 686, 779
BspPI GGATC 2 cut(s) 193, 661
BspT107I GGYRCC 1 cut(s) 443
BsrI ACTGG 2 cut(s) 81, 131
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 3 cut(s) 198, 666, 936
BssSI CACGAG 1 cut(s) 782
BssT1I CCWWGG 1 cut(s) 319
Bst2BI CACGAG 1 cut(s) 782
Bst2UI CCWGG 2 cut(s) 459, 477
Bst4CI ACNGT 5 cut(s) 180, 386, 508, 630, 958
Bst6I CTCTTC 1 cut(s) 803
BstC8I GCNNGC 2 cut(s) 684, 777
BstDEI CTNAG 3 cut(s) 327, 615, 966
BstF5I GGATG 2 cut(s) 472, 929
BstKTI GATC 3 cut(s) 201, 669, 939
BstMAI GTCTC 1 cut(s) 779
BstMBI GATC 3 cut(s) 198, 666, 936
BstMWI GCNNNNNNNGC 2 cut(s) 452, 554
BstNI CCWGG 2 cut(s) 459, 477
BstSCI CCNGG 2 cut(s) 457, 475
BstV1I GCAGC 2 cut(s) 539, 666
BstV2I GAAGAC 1 cut(s) 626
BstX2I RGATCY 1 cut(s) 666
BstYI RGATCY 1 cut(s) 666
BsuRI GGCC 2 cut(s) 637, 837
BtsCI GGATG 2 cut(s) 472, 929
Cac8I GCNNGC 2 cut(s) 684, 777
CaiI CAGNNNCTG 1 cut(s) 76
CciI TCATGA 2 cut(s) 826, 939
Cfr13I GGNCC 2 cut(s) 323, 461
Csp6I GTAC 1 cut(s) 504
CspCI CAANNNNNGTGG 2 cut(s) 479, 514
CviAII CATG 2 cut(s) 827, 940
CviQI GTAC 1 cut(s) 504
DdeI CTNAG 3 cut(s) 327, 615, 966
DpnI GATC 3 cut(s) 200, 668, 938
DpnII GATC 3 cut(s) 198, 666, 936
Eam1104I CTCTTC 1 cut(s) 803
EarI CTCTTC 1 cut(s) 803
Eco130I CCWWGG 1 cut(s) 319
Eco147I AGGCCT 1 cut(s) 637
Eco47I GGWCC 2 cut(s) 323, 461
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 2 cut(s) 457, 475
EcoT14I CCWWGG 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 2 cut(s) 830, 943
FaiI YATR 9 cut(s) 86, 275, 585, 714, 773, 828, 851, 864, 941
FalI AAGNNNNNCTT 2 cut(s) 753, 785
FaqI GGGAC 1 cut(s) 893
FatI CATG 2 cut(s) 826, 939
FbaI TGATCA 1 cut(s) 936
FblI GTMKAC 2 cut(s) 208, 953
Fnu4HI GCNGC 3 cut(s) 528, 680, 894
FokI GGATG 2 cut(s) 479, 936
Fsp4HI GCNGC 3 cut(s) 528, 680, 894
FspBI CTAG 4 cut(s) 29, 683, 776, 918
GluI GCNGC 3 cut(s) 528, 680, 894
GsuI CTGGAG 3 cut(s) 127, 282, 372
HaeIII GGCC 2 cut(s) 637, 837
HapII CCGG 1 cut(s) 464
Hin1II CATG 2 cut(s) 830, 943
HindIII AAGCTT 3 cut(s) 42, 842, 858
HinfI GANTC 3 cut(s) 144, 167, 580
HpaII CCGG 1 cut(s) 464
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 3 cut(s) 209, 931, 954
Hpy188I TCNGA 2 cut(s) 192, 330
Hpy188III TCNNGA 9 cut(s) 106, 141, 313, 351, 614, 746, 827, 918, 940
Hpy8I GTNNAC 3 cut(s) 209, 931, 954
HpyAV CCTTC 3 cut(s) 273, 415, 529
HpyCH4III ACNGT 5 cut(s) 180, 386, 508, 630, 958
HpyCH4V TGCA 3 cut(s) 527, 548, 651
HpyF10VI GCNNNNNNNGC 2 cut(s) 452, 554
HpyF3I CTNAG 3 cut(s) 327, 615, 966
Hsp92II CATG 2 cut(s) 830, 943
Ksp22I TGATCA 1 cut(s) 936
Kzo9I GATC 3 cut(s) 198, 666, 936
LmnI GCTCC 1 cut(s) 55
Lsp1109I GCAGC 2 cut(s) 539, 666
LweI GCATC 2 cut(s) 139, 232
MaeI CTAG 4 cut(s) 29, 683, 776, 918
MalI GATC 3 cut(s) 200, 668, 938
MboI GATC 3 cut(s) 198, 666, 936
MboII GAAGA 4 cut(s) 631, 791, 820, 954
MfeI CAATTG 2 cut(s) 148, 437
MflI RGATCY 1 cut(s) 666
MlyI GAGTC 1 cut(s) 574
MseI TTAA 2 cut(s) 23, 357
MspI CCGG 1 cut(s) 464
MspR9I CCNGG 2 cut(s) 459, 477
MunI CAATTG 2 cut(s) 148, 437
MvaI CCWGG 2 cut(s) 459, 477
MwoI GCNNNNNNNGC 2 cut(s) 452, 554
NdeII GATC 3 cut(s) 198, 666, 936
NheI GCTAGC 2 cut(s) 682, 775
NlaIII CATG 2 cut(s) 830, 943
NlaIV GGNNCC 2 cut(s) 445, 606
PagI TCATGA 2 cut(s) 826, 939
PceI AGGCCT 1 cut(s) 637
PfeI GAWTC 2 cut(s) 144, 167
PfoI TCCNGGA 1 cut(s) 475
PkrI GCNGC 3 cut(s) 529, 681, 895
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
PpuMI RGGWCCY 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 2 cut(s) 457, 475
PspGI CCWGG 2 cut(s) 457, 475
PspN4I GGNNCC 2 cut(s) 445, 606
PspPI GGNCC 2 cut(s) 323, 461
PspPPI RGGWCCY 1 cut(s) 323
PstNI CAGNNNCTG 1 cut(s) 76
PsuI RGATCY 1 cut(s) 666
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
SaqAI TTAA 2 cut(s) 23, 357
SatI GCNGC 3 cut(s) 528, 680, 894
Sau3AI GATC 3 cut(s) 198, 666, 936
Sau96I GGNCC 2 cut(s) 323, 461
SchI GAGTC 1 cut(s) 574
ScrFI CCNGG 2 cut(s) 459, 477
SfaNI GCATC 2 cut(s) 139, 232
SinI GGWCC 2 cut(s) 323, 461
SmlI CTYRAG 2 cut(s) 155, 839
SmoI CTYRAG 2 cut(s) 155, 839
SseBI AGGCCT 1 cut(s) 637
SsiI CCGC 2 cut(s) 245, 893
SspMI CTAG 4 cut(s) 29, 683, 776, 918
StuI AGGCCT 1 cut(s) 637
StyD4I CCNGG 2 cut(s) 457, 475
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 5 cut(s) 180, 386, 508, 630, 958
TaqI TCGA 2 cut(s) 411, 533
TauI GCSGC 1 cut(s) 896
TfiI GAWTC 2 cut(s) 144, 167
Tru1I TTAA 2 cut(s) 23, 357
Tru9I TTAA 2 cut(s) 23, 357
TseI GCWGC 2 cut(s) 527, 679
TspDTI ATGAA 4 cut(s) 176, 395, 554, 866
TspGWI ACGGA 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 323, 461
XapI RAATTY 3 cut(s) 222, 539, 905
XbaI TCTAGA 1 cut(s) 917
XmiI GTMKAC 2 cut(s) 208, 953
XspI CTAG 4 cut(s) 29, 683, 776, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.