ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 894 |
| Acc36I | ACCTGC | 2 cut(s) | 341, 894 |
| AccB1I | GGYRCC | 1 cut(s) | 369 |
| AciI | CCGC | 1 cut(s) | 373 |
| AclWI | GGATC | 4 cut(s) | 71, 319, 387, 579 |
| AcoI | YGGCCR | 2 cut(s) | 667, 746 |
| AcsI | RAATTY | 1 cut(s) | 508 |
| AcuI | CTGAAG | 1 cut(s) | 108 |
| AfaI | GTAC | 1 cut(s) | 186 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 414, 563, 564 |
| AflII | CTTAAG | 1 cut(s) | 479 |
| AgsI | TTSAA | 4 cut(s) | 319, 608, 828, 845 |
| AhlI | ACTAGT | 1 cut(s) | 653 |
| AjnI | CCWGG | 1 cut(s) | 429 |
| AluBI | AGCT | 6 cut(s) | 49, 128, 527, 698, 807, 848 |
| AluI | AGCT | 6 cut(s) | 49, 128, 527, 698, 807, 848 |
| Alw26I | GTCTC | 1 cut(s) | 111 |
| AlwI | GGATC | 4 cut(s) | 71, 319, 387, 579 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 701 |
| AoxI | GGCC | 4 cut(s) | 405, 667, 746, 877 |
| ApeKI | GCWGC | 2 cut(s) | 695, 710 |
| ApoI | RAATTY | 1 cut(s) | 508 |
| AspS9I | GGNCC | 4 cut(s) | 333, 434, 469, 772 |
| AsuC2I | CCSGG | 1 cut(s) | 740 |
| AsuHPI | GGTGA | 2 cut(s) | 323, 801 |
| AvaII | GGWCC | 4 cut(s) | 333, 434, 469, 772 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 159, 192 |
| BalI | TGGCCA | 1 cut(s) | 669 |
| BanI | GGYRCC | 1 cut(s) | 369 |
| BbsI | GAAGAC | 1 cut(s) | 347 |
| BbvI | GCAGC | 2 cut(s) | 697, 707 |
| BccI | CCATC | 1 cut(s) | 558 |
| BciT130I | CCWGG | 1 cut(s) | 431 |
| BclI | TGATCA | 1 cut(s) | 58 |
| BcnI | CCSGG | 1 cut(s) | 740 |
| BcoDI | GTCTC | 1 cut(s) | 111 |
| BcuI | ACTAGT | 1 cut(s) | 653 |
| BfaI | CTAG | 1 cut(s) | 654 |
| BfrI | CTTAAG | 1 cut(s) | 479 |
| BfuAI | ACCTGC | 2 cut(s) | 341, 894 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 724 |
| BisI | GCNGC | 3 cut(s) | 373, 696, 711 |
| BlsI | GCNGC | 3 cut(s) | 374, 697, 712 |
| Bme1390I | CCNGG | 2 cut(s) | 431, 740 |
| Bme18I | GGWCC | 4 cut(s) | 333, 434, 469, 772 |
| BmgT120I | GGNCC | 4 cut(s) | 333, 434, 469, 772 |
| BmiI | GGNNCC | 3 cut(s) | 371, 435, 470 |
| BmrFI | CCNGG | 2 cut(s) | 431, 740 |
| BmsI | GCATC | 2 cut(s) | 583, 767 |
| BpiI | GAAGAC | 1 cut(s) | 347 |
| BpmI | CTGGAG | 1 cut(s) | 585 |
| BpuEI | CTTGAG | 3 cut(s) | 35, 114, 525 |
| BpuMI | CCSGG | 1 cut(s) | 740 |
| BsaJI | CCNNGG | 2 cut(s) | 296, 430 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 414, 563, 564 |
| Bse1I | ACTGG | 2 cut(s) | 602, 719 |
| Bse3DI | GCAATG | 1 cut(s) | 675 |
| BseBI | CCWGG | 1 cut(s) | 431 |
| BseDI | CCNNGG | 2 cut(s) | 296, 430 |
| BseGI | GGATG | 2 cut(s) | 222, 598 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 414, 563, 564 |
| BseMI | GCAATG | 1 cut(s) | 675 |
| BseMII | CTCAG | 3 cut(s) | 162, 416, 834 |
| BseNI | ACTGG | 2 cut(s) | 602, 719 |
| BseXI | GCAGC | 2 cut(s) | 697, 707 |
| BshFI | GGCC | 4 cut(s) | 407, 669, 748, 879 |
| BshNI | GGYRCC | 1 cut(s) | 369 |
| BsiSI | CCGG | 2 cut(s) | 408, 739 |
| BslFI | GGGAC | 1 cut(s) | 482 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 414, 563, 564 |
| BsmAI | GTCTC | 1 cut(s) | 111 |
| BsmFI | GGGAC | 1 cut(s) | 482 |
| BsnI | GGCC | 4 cut(s) | 407, 669, 748, 879 |
| Bsp1407I | TGTACA | 1 cut(s) | 184 |
| Bsp143I | GATC | 5 cut(s) | 58, 76, 324, 379, 571 |
| BspACI | CCGC | 1 cut(s) | 373 |
| BspANI | GGCC | 4 cut(s) | 407, 669, 748, 879 |
| BspCNI | CTCAG | 3 cut(s) | 163, 415, 833 |
| BspLI | GGNNCC | 3 cut(s) | 371, 435, 470 |
| BspMI | ACCTGC | 2 cut(s) | 341, 894 |
| BspPI | GGATC | 4 cut(s) | 71, 319, 387, 579 |
| BspT107I | GGYRCC | 1 cut(s) | 369 |
| BspTI | CTTAAG | 1 cut(s) | 479 |
| BsrDI | GCAATG | 1 cut(s) | 675 |
| BsrGI | TGTACA | 1 cut(s) | 184 |
| BsrI | ACTGG | 2 cut(s) | 602, 719 |
| BssECI | CCNNGG | 2 cut(s) | 296, 430 |
| BssMI | GATC | 5 cut(s) | 58, 76, 324, 379, 571 |
| BssT1I | CCWWGG | 1 cut(s) | 296 |
| Bst2UI | CCWGG | 1 cut(s) | 431 |
| Bst4CI | ACNGT | 1 cut(s) | 489 |
| BstAFI | CTTAAG | 1 cut(s) | 479 |
| BstAUI | TGTACA | 1 cut(s) | 184 |
| BstC8I | GCNNGC | 1 cut(s) | 805 |
| BstDEI | CTNAG | 3 cut(s) | 171, 402, 820 |
| BstF5I | GGATG | 2 cut(s) | 222, 598 |
| BstKTI | GATC | 5 cut(s) | 61, 79, 327, 382, 574 |
| BstMAI | GTCTC | 1 cut(s) | 111 |
| BstMBI | GATC | 5 cut(s) | 58, 76, 324, 379, 571 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 724, 845 |
| BstNI | CCWGG | 1 cut(s) | 431 |
| BstSCI | CCNGG | 2 cut(s) | 429, 738 |
| BstV1I | GCAGC | 2 cut(s) | 697, 707 |
| BstV2I | GAAGAC | 1 cut(s) | 347 |
| BstX2I | RGATCY | 2 cut(s) | 324, 379 |
| BstYI | RGATCY | 2 cut(s) | 324, 379 |
| BsuRI | GGCC | 4 cut(s) | 407, 669, 748, 879 |
| BtsCI | GGATG | 2 cut(s) | 222, 598 |
| BtsIMutI | CAGTG | 1 cut(s) | 873 |
| BveI | ACCTGC | 2 cut(s) | 341, 894 |
| Cac8I | GCNNGC | 1 cut(s) | 805 |
| CaiI | CAGNNNCTG | 1 cut(s) | 701 |
| Cfr13I | GGNCC | 4 cut(s) | 333, 434, 469, 772 |
| Csp6I | GTAC | 1 cut(s) | 185 |
| CviAII | CATG | 5 cut(s) | 188, 239, 265, 376, 516 |
| CviQI | GTAC | 1 cut(s) | 185 |
| DdeI | CTNAG | 3 cut(s) | 171, 402, 820 |
| DpnI | GATC | 5 cut(s) | 60, 78, 326, 381, 573 |
| DpnII | GATC | 5 cut(s) | 58, 76, 324, 379, 571 |
| DraI | TTTAAA | 1 cut(s) | 43 |
| EaeI | YGGCCR | 2 cut(s) | 667, 746 |
| Eco130I | CCWWGG | 1 cut(s) | 296 |
| Eco147I | AGGCCT | 1 cut(s) | 879 |
| Eco47I | GGWCC | 4 cut(s) | 333, 434, 469, 772 |
| Eco57I | CTGAAG | 1 cut(s) | 108 |
| EcoO109I | RGGNCCY | 3 cut(s) | 434, 469, 772 |
| EcoRII | CCWGG | 1 cut(s) | 429 |
| EcoT14I | CCWWGG | 1 cut(s) | 296 |
| ErhI | CCWWGG | 1 cut(s) | 296 |
| FaeI | CATG | 5 cut(s) | 191, 242, 268, 379, 519 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 796, 828 |
| FaqI | GGGAC | 1 cut(s) | 482 |
| FatI | CATG | 5 cut(s) | 187, 238, 264, 375, 515 |
| FbaI | TGATCA | 1 cut(s) | 58 |
| Fnu4HI | GCNGC | 3 cut(s) | 373, 696, 711 |
| FokI | GGATG | 2 cut(s) | 229, 605 |
| Fsp4HI | GCNGC | 3 cut(s) | 373, 696, 711 |
| FspBI | CTAG | 1 cut(s) | 654 |
| GluI | GCNGC | 3 cut(s) | 373, 696, 711 |
| GsuI | CTGGAG | 1 cut(s) | 585 |
| HaeIII | GGCC | 4 cut(s) | 407, 669, 748, 879 |
| HapII | CCGG | 2 cut(s) | 408, 739 |
| Hin1II | CATG | 5 cut(s) | 191, 242, 268, 379, 519 |
| HinfI | GANTC | 6 cut(s) | 149, 268, 538, 608, 704, 824 |
| HpaII | CCGG | 2 cut(s) | 408, 739 |
| HphI | GGTGA | 2 cut(s) | 323, 801 |
| Hpy188I | TCNGA | 4 cut(s) | 22, 571, 703, 823 |
| Hpy99I | CGWCG | 1 cut(s) | 276 |
| HpyAV | CCTTC | 3 cut(s) | 27, 785, 822 |
| HpyCH4III | ACNGT | 1 cut(s) | 489 |
| HpyCH4V | TGCA | 5 cut(s) | 424, 506, 680, 758, 889 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 724, 845 |
| HpyF3I | CTNAG | 3 cut(s) | 171, 402, 820 |
| Hsp92II | CATG | 5 cut(s) | 191, 242, 268, 379, 519 |
| Ksp22I | TGATCA | 1 cut(s) | 58 |
| Kzo9I | GATC | 5 cut(s) | 58, 76, 324, 379, 571 |
| LmnI | GCTCC | 1 cut(s) | 853 |
| Lsp1109I | GCAGC | 2 cut(s) | 697, 707 |
| LweI | GCATC | 2 cut(s) | 583, 767 |
| MaeI | CTAG | 1 cut(s) | 654 |
| MaeIII | GTNAC | 2 cut(s) | 260, 781 |
| MalI | GATC | 5 cut(s) | 60, 78, 326, 381, 573 |
| MboI | GATC | 5 cut(s) | 58, 76, 324, 379, 571 |
| MboII | GAAGA | 7 cut(s) | 24, 114, 203, 284, 347, 504, 545 |
| MflI | RGATCY | 2 cut(s) | 324, 379 |
| MlsI | TGGCCA | 1 cut(s) | 669 |
| MluCI | AATT | 2 cut(s) | 508, 685 |
| MluNI | TGGCCA | 1 cut(s) | 669 |
| MlyI | GAGTC | 2 cut(s) | 532, 698 |
| MmeI | TCCRAC | 4 cut(s) | 194, 471, 549, 570 |
| MnlI | CCTC | 6 cut(s) | 166, 369, 408, 482, 491, 869 |
| Mox20I | TGGCCA | 1 cut(s) | 669 |
| MscI | TGGCCA | 1 cut(s) | 669 |
| MseI | TTAA | 4 cut(s) | 42, 387, 480, 767 |
| Msp20I | TGGCCA | 1 cut(s) | 669 |
| MspCI | CTTAAG | 1 cut(s) | 479 |
| MspI | CCGG | 2 cut(s) | 408, 739 |
| MspR9I | CCNGG | 2 cut(s) | 431, 740 |
| MssI | GTTTAAAC | 1 cut(s) | 43 |
| MvaI | CCWGG | 1 cut(s) | 431 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 724, 845 |
| NciI | CCSGG | 1 cut(s) | 740 |
| NdeII | GATC | 5 cut(s) | 58, 76, 324, 379, 571 |
| NlaIII | CATG | 5 cut(s) | 191, 242, 268, 379, 519 |
| NlaIV | GGNNCC | 3 cut(s) | 371, 435, 470 |
| PaqCI | CACCTGC | 1 cut(s) | 894 |
| PceI | AGGCCT | 1 cut(s) | 879 |
| PfeI | GAWTC | 4 cut(s) | 149, 268, 608, 824 |
| PkrI | GCNGC | 3 cut(s) | 374, 697, 712 |
| PleI | GAGTC | 2 cut(s) | 532, 698 |
| PmeI | GTTTAAAC | 1 cut(s) | 43 |
| PpsI | GAGTC | 2 cut(s) | 532, 698 |
| PpuMI | RGGWCCY | 3 cut(s) | 434, 469, 772 |
| Psp5II | RGGWCCY | 3 cut(s) | 434, 469, 772 |
| Psp6I | CCWGG | 1 cut(s) | 429 |
| PspGI | CCWGG | 1 cut(s) | 429 |
| PspN4I | GGNNCC | 3 cut(s) | 371, 435, 470 |
| PspPI | GGNCC | 4 cut(s) | 333, 434, 469, 772 |
| PspPPI | RGGWCCY | 3 cut(s) | 434, 469, 772 |
| PstNI | CAGNNNCTG | 1 cut(s) | 701 |
| PsuI | RGATCY | 2 cut(s) | 324, 379 |
| RsaI | GTAC | 1 cut(s) | 186 |
| RsaNI | GTAC | 1 cut(s) | 185 |
| SaqAI | TTAA | 4 cut(s) | 42, 387, 480, 767 |
| SatI | GCNGC | 3 cut(s) | 373, 696, 711 |
| Sau3AI | GATC | 5 cut(s) | 58, 76, 324, 379, 571 |
| Sau96I | GGNCC | 4 cut(s) | 333, 434, 469, 772 |
| SchI | GAGTC | 2 cut(s) | 532, 698 |
| ScrFI | CCNGG | 2 cut(s) | 431, 740 |
| SfaNI | GCATC | 2 cut(s) | 583, 767 |
| SinI | GGWCC | 4 cut(s) | 333, 434, 469, 772 |
| SmlI | CTYRAG | 4 cut(s) | 50, 129, 479, 540 |
| SmoI | CTYRAG | 4 cut(s) | 50, 129, 479, 540 |
| SpeI | ACTAGT | 1 cut(s) | 653 |
| Sse9I | AATT | 2 cut(s) | 508, 685 |
| SseBI | AGGCCT | 1 cut(s) | 879 |
| SsiI | CCGC | 1 cut(s) | 373 |
| SspMI | CTAG | 1 cut(s) | 654 |
| StuI | AGGCCT | 1 cut(s) | 879 |
| StyD4I | CCNGG | 2 cut(s) | 429, 738 |
| StyI | CCWWGG | 1 cut(s) | 296 |
| TaaI | ACNGT | 1 cut(s) | 489 |
| TaqI | TCGA | 1 cut(s) | 577 |
| TasI | AATT | 2 cut(s) | 508, 685 |
| TatI | WGTACW | 1 cut(s) | 184 |
| TauI | GCSGC | 1 cut(s) | 375 |
| TfiI | GAWTC | 4 cut(s) | 149, 268, 608, 824 |
| Tru1I | TTAA | 4 cut(s) | 42, 387, 480, 767 |
| Tru9I | TTAA | 4 cut(s) | 42, 387, 480, 767 |
| TscAI | CASTG | 1 cut(s) | 873 |
| TseI | GCWGC | 2 cut(s) | 695, 710 |
| TspDTI | ATGAA | 5 cut(s) | 204, 249, 255, 504, 852 |
| TspGWI | ACGGA | 1 cut(s) | 188 |
| TspRI | CASTG | 1 cut(s) | 873 |
| Vha464I | CTTAAG | 1 cut(s) | 479 |
| VpaK11BI | GGWCC | 4 cut(s) | 333, 434, 469, 772 |
| XapI | RAATTY | 1 cut(s) | 508 |
| XspI | CTAG | 1 cut(s) | 654 |