Rorug01G0106500

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000147
Physical Location & Seq
Forward (+)
19099205 .. 19099834
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0106500.1

Sequence Viewer

Length: 630 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGAGAGTAGTGCTAACATGCTTTGTAGGCGGAGCAGGTGGACTCCCACTACAGATCATATAAGAATCCTCAATGAGCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTAAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTATTGGTTCGTGAACCAAAGGTCTCGAGAGAAGCAGAAGAAAAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAAAGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTTCTTCCGCTGGTGTGATGATTGCTTTTAACGGGCAGATGGGGAACTATGGCGATTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTTCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTTACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCTGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

209

Amino Acids

23.44

Weight (kDa)

8.37

Isoelectric Point (pI)

61.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 1.7e-08 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 78, 394
Acc36I ACCTGC 3 cut(s) 78, 160, 394
AciI CCGC 4 cut(s) 82, 399, 546, 625
AclWI GGATC 4 cut(s) 188, 363, 382, 460
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 497
AgsI TTSAA 2 cut(s) 220, 473
AleI CACNNNNGTG 1 cut(s) 555
AluBI AGCT 4 cut(s) 130, 193, 580, 605
AluI AGCT 4 cut(s) 130, 193, 580, 605
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 2 cut(s) 191, 258
AlwI GGATC 4 cut(s) 188, 363, 382, 460
Ama87I CYCGRG 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 477
AspS9I GGNCC 2 cut(s) 153, 276
AsuHPI GGTGA 2 cut(s) 335, 512
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 153, 276
BaeGI GKGCMC 1 cut(s) 300
BanII GRGCYC 1 cut(s) 582
BbsI GAAGAC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 26, 424, 530
BceAI ACGGC 1 cut(s) 220
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BcoDI GTCTC 2 cut(s) 191, 258
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 3 cut(s) 78, 160, 394
BisI GCNGC 2 cut(s) 51, 625
BlpI GCTNAGC 1 cut(s) 581
BlsI GCNGC 2 cut(s) 52, 626
Bme18I GGWCC 2 cut(s) 153, 276
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 153, 276
BmiI GGNNCC 3 cut(s) 6, 155, 623
BpiI GAAGAC 1 cut(s) 530
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 581
BpuEI CTTGAG 1 cut(s) 596
BsaI GGTCTC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 497
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 292
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMII CTCAG 1 cut(s) 595
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 582
BsiHKCI CYCGRG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 2 cut(s) 191, 258
BsmFI GGGAC 1 cut(s) 139
Bso31I GGTCTC 1 cut(s) 258
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 2 cut(s) 300, 582
Bsp143I GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
Bsp1720I GCTNAGC 1 cut(s) 581
BspACI CCGC 4 cut(s) 82, 399, 546, 625
BspCNI CTCAG 1 cut(s) 594
BspLI GGNNCC 3 cut(s) 6, 155, 623
BspMI ACCTGC 3 cut(s) 78, 160, 394
BspPI GGATC 4 cut(s) 188, 363, 382, 460
BspTNI GGTCTC 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
Bst4CI ACNGT 1 cut(s) 554
BstDEI CTNAG 1 cut(s) 581
BstF5I GGATG 2 cut(s) 37, 292
BstKTI GATC 7 cut(s) 109, 183, 213, 311, 358, 377, 455
BstMAI GTCTC 2 cut(s) 191, 258
BstMBI GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
BstMWI GCNNNNNNNGC 2 cut(s) 79, 591
BstNSI RCATGY 1 cut(s) 73
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 530
BstX2I RGATCY 3 cut(s) 180, 374, 452
BstYI RGATCY 3 cut(s) 180, 374, 452
BtsCI GGATG 2 cut(s) 37, 292
BveI ACCTGC 3 cut(s) 78, 160, 394
Cfr13I GGNCC 2 cut(s) 153, 276
Csp6I GTAC 1 cut(s) 202
CviAII CATG 8 cut(s) 70, 293, 301, 350, 463, 493, 497, 520
CviJI RGCY 9 cut(s) 53, 130, 193, 316, 561, 580, 585, 605, 624
CviKI_1 RGCY 9 cut(s) 53, 130, 193, 316, 561, 580, 585, 605, 624
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 581
DpnI GATC 7 cut(s) 108, 182, 212, 310, 357, 376, 454
DpnII GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 580
Eco24I GRGCYC 1 cut(s) 582
Eco31I GGTCTC 1 cut(s) 258
Eco47I GGWCC 2 cut(s) 153, 276
Eco53kI GAGCTC 1 cut(s) 580
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 582
FaeI CATG 8 cut(s) 73, 296, 304, 353, 466, 496, 500, 523
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FaqI GGGAC 1 cut(s) 139
FatI CATG 8 cut(s) 69, 292, 300, 349, 462, 492, 496, 519
Fnu4HI GCNGC 2 cut(s) 51, 625
FokI GGATG 2 cut(s) 44, 299
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 2 cut(s) 51, 625
GluI GCNGC 2 cut(s) 51, 625
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
Hin1II CATG 8 cut(s) 73, 296, 304, 353, 466, 496, 500, 523
HinfI GANTC 2 cut(s) 94, 117
HphI GGTGA 2 cut(s) 335, 512
Hpy166II GTNNAC 3 cut(s) 93, 244, 279
Hpy188I TCNGA 3 cut(s) 177, 286, 535
Hpy188III TCNNGA 5 cut(s) 220, 241, 255, 257, 619
Hpy8I GTNNAC 3 cut(s) 93, 244, 279
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 304, 383, 496
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 591
HpyF3I CTNAG 1 cut(s) 581
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 8 cut(s) 73, 296, 304, 353, 466, 496, 500, 523
Kzo9I GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
LmnI GCTCC 2 cut(s) 84, 621
Lsp1109I GCAGC 1 cut(s) 62
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 334, 548
MalI GATC 7 cut(s) 108, 182, 212, 310, 357, 376, 454
MboI GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
MboII GAAGA 5 cut(s) 280, 369, 384, 387, 535
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 3 cut(s) 180, 374, 452
MhlI GDGCHC 2 cut(s) 300, 582
MluCI AATT 1 cut(s) 340
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 9 cut(s) 22, 29, 131, 171, 346, 492, 496, 533, 589
Mph1103I ATGCAT 1 cut(s) 498
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 2 cut(s) 366, 420
MslI CAYNNNNRTG 1 cut(s) 555
MspA1I CMGCKG 2 cut(s) 401, 627
MunI CAATTG 1 cut(s) 340
MwoI GCNNNNNNNGC 2 cut(s) 79, 591
NdeII GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
NlaIII CATG 8 cut(s) 73, 296, 304, 353, 466, 496, 500, 523
NlaIV GGNNCC 3 cut(s) 6, 155, 623
NmeAIII GCCGAG 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 548
NsiI ATGCAT 1 cut(s) 498
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 555
PaeR7I CTCGAG 1 cut(s) 255
PaqCI CACCTGC 2 cut(s) 78, 394
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 52, 626
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 582
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 3 cut(s) 6, 155, 623
PspPI GGNCC 2 cut(s) 153, 276
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 3 cut(s) 180, 374, 452
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 555
SacI GAGCTC 1 cut(s) 582
SaqAI TTAA 2 cut(s) 366, 420
SatI GCNGC 2 cut(s) 51, 625
Sau3AI GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
Sau96I GGNCC 2 cut(s) 153, 276
SchI GAGTC 1 cut(s) 88
SduI GDGCHC 2 cut(s) 300, 582
SfcI CTRYAG 2 cut(s) 102, 162
Sfr274I CTCGAG 1 cut(s) 255
SinI GGWCC 2 cut(s) 153, 276
SlaI CTCGAG 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 2 cut(s) 255, 575
SmoI CTYRAG 2 cut(s) 255, 575
Sse9I AATT 1 cut(s) 340
SsiI CCGC 4 cut(s) 82, 399, 546, 625
SstI GAGCTC 1 cut(s) 582
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 1 cut(s) 228
TaqI TCGA 2 cut(s) 213, 256
TasI AATT 1 cut(s) 340
TauI GCSGC 1 cut(s) 627
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 2 cut(s) 366, 420
Tru9I TTAA 2 cut(s) 366, 420
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 3 cut(s) 281, 473, 536
VpaK11BI GGWCC 2 cut(s) 153, 276
XceI RCATGY 1 cut(s) 73
XhoI CTCGAG 1 cut(s) 255
XmnI GAANNNNTTC 1 cut(s) 477
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.