Rmu_sc0003737.1_g000007

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003737.1
OG0000147
Physical Location & Seq
Forward (+)
50153 .. 52844
2692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003737.1_g000007.1.cds

Sequence Viewer

Length: 711 bp
atgcttacccagaaacatcttcaaaaccagctttggagtgagattggtaaccttgcccctaggaatcaagatgcttgggccttaattggtgatttcaacaatgttactaatgctgatgagaaatgtggaggggtctccccctataatgtcttcttgcataattttgttaattttttgaatagtatcaacataatttctatcaatgcagaagggatacccttcacctggactaataaacaccaagataacacagtgatctatgaacgactagatagagtgacagctaatgctaagtggctacaagattttcctcattgtaccttggaaaatcttcctattgttggttcagaccgtggacccatcttacttacaactttaccaaaacggaaaattataatcgagactgatagcgatagtgacaagtcgatacaatccctgttcagctgggccagatcaccctcaggaccactgaaacatttggccctagaaggactcccctcgctccttgtgacaggacaacacatcgatagctaccatcgaccccgctaccagcagcgacgatccacaacacgctaccgcgacccacgaggttcagcacaccctcgagttccagagccagaacatagaaccgaggtctgtcgtaaccaccgacccaaccacggcactacagatagcaatgcgcgacctcatggaaaccctcgcacaggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

236

Amino Acids

26.82

Weight (kDa)

9.07

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 395
AccII CGCG 2 cut(s) 579, 682
AciI CCGC 2 cut(s) 544, 577
AclWI GGATC 1 cut(s) 555
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 4 cut(s) 225, 341, 659, 704
AgsI TTSAA 3 cut(s) 23, 97, 178
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 4 cut(s) 31, 284, 444, 531
AluI AGCT 4 cut(s) 31, 284, 444, 531
Alw26I GTCTC 2 cut(s) 139, 395
AlwI GGATC 1 cut(s) 555
Ama87I CYCGRG 1 cut(s) 603
AoxI GGCC 3 cut(s) 78, 447, 480
ApeKI GCWGC 1 cut(s) 553
Asp700I GAANNNNTTC 1 cut(s) 330
AspA2I CCTAGG 1 cut(s) 59
AspLEI GCGC 1 cut(s) 682
AspS9I GGNCC 5 cut(s) 78, 356, 447, 464, 481
AsuHPI GGTGA 3 cut(s) 101, 214, 447
AvaI CYCGRG 1 cut(s) 603
AvaII GGWCC 2 cut(s) 356, 464
AvrII CCTAGG 1 cut(s) 59
AxyI CCTNAGG 1 cut(s) 460
BauI CACGAG 1 cut(s) 585
BbsI GAAGAC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 565
BccI CCATC 2 cut(s) 368, 543
BceAI ACGGC 1 cut(s) 676
BciT130I CCWGG 1 cut(s) 226
BciVI GTATCC 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 139, 395
BfaI CTAG 3 cut(s) 60, 269, 485
BfmI CTRYAG 1 cut(s) 666
BfuI GTATCC 1 cut(s) 207
BisI GCNGC 1 cut(s) 554
BlnI CCTAGG 1 cut(s) 59
BlsI GCNGC 1 cut(s) 555
Bme1390I CCNGG 1 cut(s) 226
Bme18I GGWCC 2 cut(s) 356, 464
BmeT110I CYCGRG 1 cut(s) 603
BmgT120I GGNCC 5 cut(s) 78, 356, 447, 464, 481
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 1 cut(s) 226
BmsI GCATC 1 cut(s) 61
BpiI GAAGAC 1 cut(s) 142
Bsa29I ATCGAT 1 cut(s) 525
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 5 cut(s) 59, 321, 352, 630, 658
Bsc4I CCNNNNNNNGG 4 cut(s) 225, 341, 659, 704
Bse21I CCTNAGG 1 cut(s) 460
Bse3DI GCAATG 1 cut(s) 682
BseBI CCWGG 1 cut(s) 226
BseCI ATCGAT 1 cut(s) 525
BseDI CCNNGG 5 cut(s) 59, 321, 352, 630, 658
BseLI CCNNNNNNNGG 4 cut(s) 225, 341, 659, 704
BseMI GCAATG 1 cut(s) 682
BseMII CTCAG 1 cut(s) 474
BseXI GCAGC 1 cut(s) 565
BseYI CCCAGC 1 cut(s) 444
Bsh1236I CGCG 2 cut(s) 579, 682
BshFI GGCC 3 cut(s) 80, 449, 482
BshVI ATCGAT 1 cut(s) 525
BsiHKCI CYCGRG 1 cut(s) 603
BslI CCNNNNNNNGG 4 cut(s) 225, 341, 659, 704
BsmAI GTCTC 2 cut(s) 139, 395
BsnI GGCC 3 cut(s) 80, 449, 482
Bso31I GGTCTC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 603
Bsp143I GATC 3 cut(s) 255, 452, 560
BspACI CCGC 2 cut(s) 544, 577
BspANI GGCC 3 cut(s) 80, 449, 482
BspCNI CTCAG 1 cut(s) 473
BspDI ATCGAT 1 cut(s) 525
BspFNI CGCG 2 cut(s) 579, 682
BspLI GGNNCC 1 cut(s) 358
BspPI GGATC 1 cut(s) 555
BspTNI GGTCTC 1 cut(s) 139
BsrDI GCAATG 1 cut(s) 682
BssECI CCNNGG 5 cut(s) 59, 321, 352, 630, 658
BssMI GATC 3 cut(s) 255, 452, 560
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 2 cut(s) 59, 321
Bst2BI CACGAG 1 cut(s) 585
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 2 cut(s) 253, 353
BstDEI CTNAG 2 cut(s) 291, 460
BstDSI CCRYGG 2 cut(s) 352, 658
BstEII GGTNACC 1 cut(s) 47
BstENI CCTNNNNNAGG 1 cut(s) 702
BstFNI CGCG 2 cut(s) 579, 682
BstHHI GCGC 1 cut(s) 682
BstKTI GATC 3 cut(s) 258, 455, 563
BstMAI GTCTC 2 cut(s) 139, 395
BstMBI GATC 3 cut(s) 255, 452, 560
BstNI CCWGG 1 cut(s) 226
BstPI GGTNACC 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 666
BstUI CGCG 2 cut(s) 579, 682
BstV1I GCAGC 1 cut(s) 565
BstV2I GAAGAC 1 cut(s) 142
Bsu15I ATCGAT 1 cut(s) 525
Bsu36I CCTNAGG 1 cut(s) 460
BsuI GTATCC 1 cut(s) 207
BsuRI GGCC 3 cut(s) 80, 449, 482
BsuTUI ATCGAT 1 cut(s) 525
BtgI CCRYGG 2 cut(s) 352, 658
BtsIMutI CAGTG 2 cut(s) 258, 467
CfoI GCGC 1 cut(s) 682
Cfr13I GGNCC 5 cut(s) 78, 356, 447, 464, 481
ClaI ATCGAT 1 cut(s) 525
Csp6I GTAC 1 cut(s) 318
CviAII CATG 1 cut(s) 689
CviJI RGCY 9 cut(s) 31, 80, 284, 298, 444, 449, 482, 531, 616
CviKI_1 RGCY 9 cut(s) 31, 80, 284, 298, 444, 449, 482, 531, 616
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 2 cut(s) 291, 460
DpnI GATC 3 cut(s) 257, 454, 562
DpnII GATC 3 cut(s) 255, 452, 560
Eco130I CCWWGG 2 cut(s) 59, 321
Eco31I GGTCTC 1 cut(s) 139
Eco47I GGWCC 2 cut(s) 356, 464
Eco81I CCTNAGG 1 cut(s) 460
Eco88I CYCGRG 1 cut(s) 603
Eco91I GGTNACC 1 cut(s) 47
EcoNI CCTNNNNNAGG 1 cut(s) 702
EcoO65I GGTNACC 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 224
EcoT14I CCWWGG 2 cut(s) 59, 321
ErhI CCWWGG 2 cut(s) 59, 321
FaeI CATG 1 cut(s) 692
FaiI YATR 7 cut(s) 144, 159, 191, 261, 395, 624, 690
FatI CATG 1 cut(s) 688
FauI CCCGC 1 cut(s) 551
Fnu4HI GCNGC 1 cut(s) 554
Fsp4HI GCNGC 1 cut(s) 554
FspBI CTAG 3 cut(s) 60, 269, 485
GlaI GCGC 1 cut(s) 681
GluI GCNGC 1 cut(s) 554
GsaI CCCAGC 1 cut(s) 448
HaeIII GGCC 3 cut(s) 80, 449, 482
HhaI GCGC 1 cut(s) 682
Hin1II CATG 1 cut(s) 692
Hin6I GCGC 1 cut(s) 680
HinP1I GCGC 1 cut(s) 680
HinfI GANTC 2 cut(s) 64, 492
HphI GGTGA 3 cut(s) 101, 214, 447
Hpy166II GTNNAC 1 cut(s) 356
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 4 cut(s) 68, 400, 462, 611
Hpy8I GTNNAC 1 cut(s) 356
Hpy99I CGWCG 1 cut(s) 561
HpyAV CCTTC 3 cut(s) 203, 229, 482
HpyCH4III ACNGT 2 cut(s) 253, 353
HpyCH4V TGCA 2 cut(s) 157, 206
HpyF3I CTNAG 2 cut(s) 291, 460
Hsp92II CATG 1 cut(s) 692
HspAI GCGC 1 cut(s) 680
Kzo9I GATC 3 cut(s) 255, 452, 560
LmnI GCTCC 1 cut(s) 507
Lsp1109I GCAGC 1 cut(s) 565
LweI GCATC 1 cut(s) 61
MaeI CTAG 3 cut(s) 60, 269, 485
MaeIII GTNAC 6 cut(s) 47, 103, 277, 416, 508, 641
MalI GATC 3 cut(s) 257, 454, 562
MboI GATC 3 cut(s) 255, 452, 560
MboII GAAGA 3 cut(s) 11, 142, 323
MluCI AATT 5 cut(s) 84, 160, 169, 192, 390
MlyI GAGTC 1 cut(s) 486
MnlI CCTC 9 cut(s) 122, 321, 469, 508, 581, 612, 625, 696, 708
MroXI GAANNNNTTC 1 cut(s) 330
MseI TTAA 2 cut(s) 83, 168
MspA1I CMGCKG 1 cut(s) 444
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
MvnI CGCG 2 cut(s) 579, 682
NdeII GATC 3 cut(s) 255, 452, 560
NlaIII CATG 1 cut(s) 692
NlaIV GGNNCC 1 cut(s) 358
NmuCI GTSAC 3 cut(s) 277, 416, 508
PaeR7I CTCGAG 1 cut(s) 603
PcsI WCGNNNNNNNCGW 1 cut(s) 646
PdmI GAANNNNTTC 1 cut(s) 330
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 555
PleI GAGTC 1 cut(s) 486
PpsI GAGTC 1 cut(s) 486
PsiI TTATAA 1 cut(s) 395
Psp6I CCWGG 1 cut(s) 224
PspEI GGTNACC 1 cut(s) 47
PspFI CCCAGC 1 cut(s) 444
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 358
PspPI GGNCC 5 cut(s) 78, 356, 447, 464, 481
PspXI VCTCGAGB 1 cut(s) 603
PvuII CAGCTG 1 cut(s) 444
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SaqAI TTAA 2 cut(s) 83, 168
SatI GCNGC 1 cut(s) 554
Sau3AI GATC 3 cut(s) 255, 452, 560
Sau96I GGNCC 5 cut(s) 78, 356, 447, 464, 481
SchI GAGTC 1 cut(s) 486
ScrFI CCNGG 1 cut(s) 226
SfaNI GCATC 1 cut(s) 61
SfcI CTRYAG 1 cut(s) 666
Sfr274I CTCGAG 1 cut(s) 603
SinI GGWCC 2 cut(s) 356, 464
SlaI CTCGAG 1 cut(s) 603
SmlI CTYRAG 1 cut(s) 603
SmoI CTYRAG 1 cut(s) 603
Sse9I AATT 5 cut(s) 84, 160, 169, 192, 390
SsiI CCGC 2 cut(s) 544, 577
SspMI CTAG 3 cut(s) 60, 269, 485
StyD4I CCNGG 1 cut(s) 224
StyI CCWWGG 2 cut(s) 59, 321
TaaI ACNGT 2 cut(s) 253, 353
TaqI TCGA 5 cut(s) 399, 425, 525, 538, 604
TasI AATT 5 cut(s) 84, 160, 169, 192, 390
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 2 cut(s) 83, 168
Tru9I TTAA 2 cut(s) 83, 168
TscAI CASTG 2 cut(s) 258, 474
TseFI GTSAC 3 cut(s) 277, 416, 508
TseI GCWGC 1 cut(s) 553
Tsp45I GTSAC 3 cut(s) 277, 416, 508
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 2 cut(s) 258, 474
VpaK11BI GGWCC 2 cut(s) 356, 464
XagI CCTNNNNNAGG 1 cut(s) 702
XhoI CTCGAG 1 cut(s) 603
XmaJI CCTAGG 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 3 cut(s) 60, 269, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.