FvH4_4g06411

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000147
Physical Location & Seq
Forward (+)
5682715 .. 5683495
781 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06411.t1

Sequence Viewer

Length: 558 bp
ATGGGCCTGGAGGGTGCTATCGATCTACCATGGATATGCGTAGGAGACTTCAATGAGTTCAATTGGCCACATGAAAAAAGGAGATCATTGTCCTTAATCATCAACACTGAGCCATCAAGTGAGAAAGGCCTAAAGCCTTACAAGTTCAAACCCAGTTGGATTGAAGATACTGAATGCACTAATATAGTTAATGAGGCATGGTCTGATCAGAATTATGGCAACTTTTCCAGTCAATGGGCAGCCAACCTCCATCACTACAGCAATGCTCTTGGGAAATGGAGCAAAAAATTTTCCAACAACAGAAGGAAAATTAACTGCAACATTGAAGAGTTACAGATGATTCAAGCCAACTCCATACCGGAGAAGCATGATCGTGCAAGAAGCCTAACAGATGAAATAGCCCAGCTTTGGGACAATGAGGAGAAGTATTGGGCACAAAGATCTCGCATAAAGTGGCTAAAAACTGGTGATTCCAACTCAAGATTCTTTCACCTAACCACTGTTCATAGAAGGAAAAGAAATAAAGTGCTCAAGTTAAAGACTAACAACAACATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

186

Amino Acids

21.88

Weight (kDa)

9.36

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 234
AcoI YGGCCR 1 cut(s) 65
AcsI RAATTY 1 cut(s) 287
AfiI CCNNNNNNNGG 3 cut(s) 234, 408, 409
AgsI TTSAA 6 cut(s) 52, 61, 148, 164, 326, 344
AjnI CCWGG 1 cut(s) 6
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
AluBI AGCT 1 cut(s) 406
AluI AGCT 1 cut(s) 406
Alw21I GWGCWC 1 cut(s) 531
Alw26I GTCTC 1 cut(s) 39
AoxI GGCC 3 cut(s) 4, 65, 127
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 479, 482
BaeGI GKGCMC 1 cut(s) 436
BalI TGGCCA 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 531
BbvI GCAGC 1 cut(s) 251
BccI CCATC 2 cut(s) 121, 258
BciT130I CCWGG 1 cut(s) 8
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 1 cut(s) 556
BfmI CTRYAG 1 cut(s) 256
BglII AGATCT 1 cut(s) 440
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 8
BmrI ACTGGG 1 cut(s) 147
BmuI ACTGGG 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 29
BpuEI CTTGAG 2 cut(s) 463, 515
Bsa29I ATCGAT 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 358
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 408, 409
Bse1I ACTGG 3 cut(s) 153, 228, 469
Bse3DI GCAATG 1 cut(s) 268
BseBI CCWGG 1 cut(s) 8
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 29
BseLI CCNNNNNNNGG 3 cut(s) 234, 408, 409
BseMI GCAATG 1 cut(s) 268
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 3 cut(s) 153, 228, 469
BseRI GAGGAG 1 cut(s) 434
BseSI GKGCMC 1 cut(s) 436
BseXI GCAGC 1 cut(s) 251
BseYI CCCAGC 1 cut(s) 402
BshFI GGCC 3 cut(s) 6, 67, 129
BshVI ATCGAT 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 531
BsiSI CCGG 1 cut(s) 359
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 3 cut(s) 234, 408, 409
BsmAI GTCTC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 425
BsmI GAATGC 1 cut(s) 179
BsnI GGCC 3 cut(s) 6, 67, 129
Bsp1286I GDGCHC 2 cut(s) 436, 531
Bsp143I GATC 5 cut(s) 22, 83, 205, 370, 440
Bsp19I CCATGG 1 cut(s) 29
BspANI GGCC 3 cut(s) 6, 67, 129
BspCNI CTCAG 1 cut(s) 100
BspDI ATCGAT 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 268
BsrI ACTGG 3 cut(s) 153, 228, 469
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 5 cut(s) 22, 83, 205, 370, 440
BssT1I CCWWGG 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 502
Bst6I CTCTTC 1 cut(s) 321
BstDEI CTNAG 1 cut(s) 108
BstDSI CCRYGG 1 cut(s) 29
BstKTI GATC 5 cut(s) 25, 86, 208, 373, 443
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 5 cut(s) 22, 83, 205, 370, 440
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BstSFI CTRYAG 1 cut(s) 256
BstSLI GKGCMC 1 cut(s) 436
BstV1I GCAGC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
Bsu15I ATCGAT 1 cut(s) 21
BsuRI GGCC 3 cut(s) 6, 67, 129
BsuTUI ATCGAT 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 29
BtsIMutI CAGTG 2 cut(s) 105, 498
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 21
CviAII CATG 4 cut(s) 30, 71, 198, 368
DdeI CTNAG 1 cut(s) 108
DpnI GATC 5 cut(s) 24, 85, 207, 372, 442
DpnII GATC 5 cut(s) 22, 83, 205, 370, 440
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 29
Eco147I AGGCCT 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 4 cut(s) 33, 74, 201, 371
FaqI GGGAC 1 cut(s) 425
FatI CATG 4 cut(s) 29, 70, 197, 367
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 1 cut(s) 556
GluI GCNGC 1 cut(s) 240
GsaI CCCAGC 1 cut(s) 406
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 3 cut(s) 6, 67, 129
HapII CCGG 1 cut(s) 359
Hin1II CATG 4 cut(s) 33, 74, 201, 371
HinfI GANTC 3 cut(s) 340, 470, 483
HpaII CCGG 1 cut(s) 359
HphI GGTGA 2 cut(s) 479, 482
Hpy188I TCNGA 2 cut(s) 205, 210
Hpy188III TCNNGA 1 cut(s) 480
HpyAV CCTTC 2 cut(s) 297, 504
HpyCH4III ACNGT 1 cut(s) 502
HpyCH4V TGCA 3 cut(s) 177, 318, 377
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 4 cut(s) 33, 74, 201, 371
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 5 cut(s) 22, 83, 205, 370, 440
LmnI GCTCC 1 cut(s) 279
LpnPI CCDG 6 cut(s) 20, 166, 241, 372, 416, 450
Lsp1109I GCAGC 1 cut(s) 251
MaeI CTAG 1 cut(s) 556
MaeIII GTNAC 1 cut(s) 330
MalI GATC 5 cut(s) 24, 85, 207, 372, 442
MboI GATC 5 cut(s) 22, 83, 205, 370, 440
MboII GAAGA 2 cut(s) 176, 338
MfeI CAATTG 1 cut(s) 61
MflI RGATCY 1 cut(s) 440
MhlI GDGCHC 2 cut(s) 436, 531
MlsI TGGCCA 1 cut(s) 67
MluCI AATT 4 cut(s) 61, 211, 287, 309
MluNI TGGCCA 1 cut(s) 67
MmeI TCCRAC 3 cut(s) 137, 318, 498
MnlI CCTC 4 cut(s) 4, 187, 257, 412
Mox20I TGGCCA 1 cut(s) 67
MscI TGGCCA 1 cut(s) 67
MseI TTAA 4 cut(s) 95, 189, 312, 536
MslI CAYNNNNRTG 2 cut(s) 34, 372
Msp20I TGGCCA 1 cut(s) 67
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 8
MunI CAATTG 1 cut(s) 61
Mva1269I GAATGC 1 cut(s) 179
MvaI CCWGG 1 cut(s) 8
NcoI CCATGG 1 cut(s) 29
NdeII GATC 5 cut(s) 22, 83, 205, 370, 440
NlaIII CATG 4 cut(s) 33, 74, 201, 371
PceI AGGCCT 1 cut(s) 129
PctI GAATGC 1 cut(s) 179
PfeI GAWTC 3 cut(s) 340, 470, 483
PflMI CCANNNNNTGG 1 cut(s) 234
PkrI GCNGC 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 6
PspFI CCCAGC 1 cut(s) 402
PspGI CCWGG 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 440
RseI CAYNNNNRTG 2 cut(s) 34, 372
SaqAI TTAA 4 cut(s) 95, 189, 312, 536
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 5 cut(s) 22, 83, 205, 370, 440
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 2 cut(s) 436, 531
SetI ASST 3 cut(s) 249, 408, 495
SfcI CTRYAG 1 cut(s) 256
SmiMI CAYNNNNRTG 2 cut(s) 34, 372
SmlI CTYRAG 2 cut(s) 478, 530
SmoI CTYRAG 2 cut(s) 478, 530
Sse9I AATT 4 cut(s) 61, 211, 287, 309
SseBI AGGCCT 1 cut(s) 129
SspMI CTAG 1 cut(s) 556
StuI AGGCCT 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 6
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 502
TaqI TCGA 1 cut(s) 21
TasI AATT 4 cut(s) 61, 211, 287, 309
TfiI GAWTC 3 cut(s) 340, 470, 483
Tru1I TTAA 4 cut(s) 95, 189, 312, 536
Tru9I TTAA 4 cut(s) 95, 189, 312, 536
TscAI CASTG 2 cut(s) 112, 505
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 3 cut(s) 87, 408, 494
TspRI CASTG 2 cut(s) 112, 505
Van91I CCANNNNNTGG 1 cut(s) 234
XapI RAATTY 1 cut(s) 287
XspI CTAG 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.