Rmu_co8216750.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8216750.1
OG0000147
Physical Location & Seq
Reverse (-)
94 .. 666
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8216750.1_g000001.1.cds

Sequence Viewer

Length: 573 bp
atgaattacatctcatggaactgtcaaggcttggggaagtcattgatagcacaaaatttaagggaggttcgctcccacaggcctgcttttatttttttgtcggagacacgtcagagtagtaattttgtgaataaggtacaaagacaatttgtttacagcaagggtttcaatgtggaccctataaattcagccggtggcctttcgttatggcggaaaccggattttactgtggatatcttggatcattccccacactttatcgatactgtggttaaaaaatctgcctttgaaagttttaggataacttggttctatgatccaccctatagtgcagggaaaaatgttttctggaattcatggaataacaggaattggggtgatggaaaaccttggctagtaattggagatatgaatgagcttgctagtcaacatgagaaggatggaggtgcaccatggggctccaatagaaggcaatatcttcgaaatttccaaaactctaatcttcttgacattggtttcaaaggacagagtttcacttgggcaaggaaagagaatggagtaattgtgctataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos Exo_endo_phos_2

Protein Analysis

190

Amino Acids

21.97

Weight (kDa)

9.67

Isoelectric Point (pI)

29.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 211
AclWI GGATC 2 cut(s) 249, 311
AcsI RAATTY 4 cut(s) 55, 184, 352, 484
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 468
AflIII ACRYGT 1 cut(s) 107
AgsI TTSAA 3 cut(s) 169, 290, 520
AjiI CACGTC 1 cut(s) 110
AluBI AGCT 1 cut(s) 418
AluI AGCT 1 cut(s) 418
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 1 cut(s) 98
Alw44I GTGCAC 1 cut(s) 447
AlwI GGATC 2 cut(s) 249, 311
AoxI GGCC 2 cut(s) 80, 196
ApaLI GTGCAC 1 cut(s) 447
ApoI RAATTY 4 cut(s) 55, 184, 352, 484
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 389
AsuII TTCGAA 1 cut(s) 481
AvaII GGWCC 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 451
BaeI ACNNNNGTAYC 2 cut(s) 255, 288
BanII GRGCYC 1 cut(s) 461
Bbv12I GWGCWC 1 cut(s) 451
BccI CCATC 2 cut(s) 374, 434
BcgI CGANNNNNNTGC 2 cut(s) 461, 495
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 2 cut(s) 395, 423
BfmI CTRYAG 1 cut(s) 325
Bme18I GGWCC 1 cut(s) 175
BmgBI CACGTC 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 2 cut(s) 177, 460
BplI GAGNNNNNCTC 2 cut(s) 56, 88
Bpu14I TTCGAA 1 cut(s) 481
Bsa29I ATCGAT 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 389, 452
BsaWI WCCGGW 1 cut(s) 217
BsaXI ACNNNNNCTCC 1 cut(s) 549
Bsc4I CCNNNNNNNGG 1 cut(s) 468
Bse118I RCCGGY 1 cut(s) 191
BseCI ATCGAT 1 cut(s) 261
BseDI CCNNGG 2 cut(s) 389, 452
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 1 cut(s) 468
BseSI GKGCMC 1 cut(s) 451
BsgI GTGCAG 1 cut(s) 351
BshFI GGCC 2 cut(s) 82, 198
BshVI ATCGAT 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 451
BsiSI CCGG 2 cut(s) 192, 218
BslI CCNNNNNNNGG 1 cut(s) 468
BsmAI GTCTC 1 cut(s) 98
BsnI GGCC 2 cut(s) 82, 198
Bsp119I TTCGAA 1 cut(s) 481
Bsp1286I GDGCHC 2 cut(s) 451, 461
Bsp143I GATC 2 cut(s) 241, 316
Bsp19I CCATGG 1 cut(s) 452
BspACI CCGC 1 cut(s) 211
BspANI GGCC 2 cut(s) 82, 198
BspDI ATCGAT 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 177, 460
BspPI GGATC 2 cut(s) 249, 311
BspT104I TTCGAA 1 cut(s) 481
BsrFI RCCGGY 1 cut(s) 191
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 389, 452
BssMI GATC 2 cut(s) 241, 316
BssT1I CCWWGG 2 cut(s) 389, 452
Bst4CI ACNGT 3 cut(s) 23, 229, 268
BstBI TTCGAA 1 cut(s) 481
BstC8I GCNNGC 2 cut(s) 84, 420
BstDSI CCRYGG 1 cut(s) 452
BstF5I GGATG 1 cut(s) 445
BstKTI GATC 2 cut(s) 244, 319
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 2 cut(s) 241, 316
BstSFI CTRYAG 1 cut(s) 325
BstSLI GKGCMC 1 cut(s) 451
Bsu15I ATCGAT 1 cut(s) 261
BsuRI GGCC 2 cut(s) 82, 198
BsuTUI ATCGAT 1 cut(s) 261
BtgI CCRYGG 1 cut(s) 452
BtrI CACGTC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 445
Cac8I GCNNGC 2 cut(s) 84, 420
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 175
ClaI ATCGAT 1 cut(s) 261
Csp6I GTAC 1 cut(s) 137
CviAII CATG 4 cut(s) 15, 357, 431, 453
CviJI RGCY 7 cut(s) 30, 82, 191, 198, 394, 418, 459
CviKI_1 RGCY 7 cut(s) 30, 82, 191, 198, 394, 418, 459
CviQI GTAC 1 cut(s) 137
DpnI GATC 2 cut(s) 243, 318
DpnII GATC 2 cut(s) 241, 316
EciI GGCGGA 1 cut(s) 226
Eco130I CCWWGG 2 cut(s) 389, 452
Eco147I AGGCCT 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 461
Eco32I GATATC 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 175
EcoRI GAATTC 1 cut(s) 352
EcoRV GATATC 1 cut(s) 235
EcoT14I CCWWGG 2 cut(s) 389, 452
EcoT38I GRGCYC 1 cut(s) 461
ErhI CCWWGG 2 cut(s) 389, 452
FaeI CATG 4 cut(s) 18, 360, 434, 456
FatI CATG 4 cut(s) 14, 356, 430, 452
FokI GGATG 1 cut(s) 452
FriOI GRGCYC 1 cut(s) 461
FspBI CTAG 2 cut(s) 395, 423
HaeIII GGCC 2 cut(s) 82, 198
HapII CCGG 2 cut(s) 192, 218
Hin1II CATG 4 cut(s) 18, 360, 434, 456
HincII GTYRAC 1 cut(s) 428
HindII GTYRAC 1 cut(s) 428
HpaII CCGG 2 cut(s) 192, 218
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 4 cut(s) 154, 175, 428, 449
Hpy188I TCNGA 2 cut(s) 103, 114
Hpy188III TCNNGA 2 cut(s) 349, 506
Hpy8I GTNNAC 4 cut(s) 154, 175, 428, 449
HpyAV CCTTC 2 cut(s) 430, 462
HpyCH4III ACNGT 3 cut(s) 23, 229, 268
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 2 cut(s) 332, 449
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 4 cut(s) 18, 360, 434, 456
Kzo9I GATC 2 cut(s) 241, 316
LmnI GCTCC 2 cut(s) 77, 464
LpnPI CCDG 7 cut(s) 64, 96, 205, 231, 318, 334, 352
MaeI CTAG 2 cut(s) 395, 423
MaeII ACGT 1 cut(s) 109
MalI GATC 2 cut(s) 243, 318
MboI GATC 2 cut(s) 241, 316
MboII GAAGA 2 cut(s) 470, 494
MhlI GDGCHC 2 cut(s) 451, 461
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 2 cut(s) 58, 437
MseI TTAA 2 cut(s) 59, 273
MspI CCGG 2 cut(s) 192, 218
NcoI CCATGG 1 cut(s) 452
NdeII GATC 2 cut(s) 241, 316
NlaIII CATG 4 cut(s) 18, 360, 434, 456
NlaIV GGNNCC 2 cut(s) 177, 460
NspV TTCGAA 1 cut(s) 481
PceI AGGCCT 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 177, 460
PspPI GGNCC 1 cut(s) 175
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SaqAI TTAA 2 cut(s) 59, 273
Sau3AI GATC 2 cut(s) 241, 316
Sau96I GGNCC 1 cut(s) 175
SduI GDGCHC 2 cut(s) 451, 461
SetI ASST 6 cut(s) 69, 112, 138, 391, 420, 448
SfcI CTRYAG 1 cut(s) 325
SfuI TTCGAA 1 cut(s) 481
SinI GGWCC 1 cut(s) 175
SseBI AGGCCT 1 cut(s) 82
SsiI CCGC 1 cut(s) 211
SspMI CTAG 2 cut(s) 395, 423
StuI AGGCCT 1 cut(s) 82
StyI CCWWGG 2 cut(s) 389, 452
TaaI ACNGT 3 cut(s) 23, 229, 268
TaiI ACGT 1 cut(s) 112
TaqI TCGA 2 cut(s) 261, 481
Tru1I TTAA 2 cut(s) 59, 273
Tru9I TTAA 2 cut(s) 59, 273
TspDTI ATGAA 3 cut(s) 17, 345, 425
VneI GTGCAC 1 cut(s) 447
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 4 cut(s) 55, 184, 352, 484
XspI CTAG 2 cut(s) 395, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.