Rmu_sc0000847.1_g000040

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000847.1
OG0000147
Physical Location & Seq
Reverse (-)
174632 .. 175636
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000847.1_g000040.1.cds

Sequence Viewer

Length: 1005 bp
atgaagcagatttcgctgtggaacaaactggctgaactaagaccaaacagtcacgaaaagcggcttctaaaaggagactttaacataattatttctttggatgaaaaattgggtggaaatcaaaccgtaactcagtacatgttgaactttatccaattccttacagatatgaatttatgctctataaatgctgtcggtgtgccttttacctggacgaataatcaaaaacaggatgctgtgatttatgaacgattagatcaggcttgcgccaatgcagcttttctaaatgattacccagatttagttctggaaaacctccctattgtgggctccgatcatggccctatttgtctaaccataaaacataaagaaaggcgcccaagtaaggcttttaagtttgaagctatgtggttgtctcatcagggttttaagcctctggtagctaatatttggaaaccaaattttgataataatcccttgcttaatttcctaacaatctcccaacagttcatttaccaggttaagtcctggaataaaaacacttttggcaatcttttcaaacagattgatgaccttaatcaacaaagtactactttgcaactgcagcttatgaactcacctgattcttcttatttgcaggagagagatactcaaattagaaatgagttagctacttgctataaaaatgaggaagctttttgggctaaaaaagccagagccaattggctaactttgggagacaggaataccagatttttccagactcaagctaatatccggaggaaatctaatcacatttccaaaattaaggatgttgatggcaactggttttatgaccagaatgacattgctatggtcttagttagggagttcaagaagagatttcatgcggttgaacttccgcaaaatcattcgatgctcaactttctctctattattacaccctgcatttctgatcaggataacgcctccttgttgaaacaggttacagatcgggagatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

334

Amino Acids

38.9

Weight (kDa)

8.68

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 375
AccIII TCCGGA 1 cut(s) 777
AciI CCGC 3 cut(s) 61, 890, 902
AcsI RAATTY 2 cut(s) 172, 460
AcyI GRCGYC 1 cut(s) 376
AfaI GTAC 2 cut(s) 137, 589
AfiI CCNNNNNNNGG 3 cut(s) 325, 326, 385
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 6 cut(s) 145, 401, 559, 874, 896, 979
AjnI CCWGG 3 cut(s) 209, 516, 527
AluBI AGCT 7 cut(s) 278, 404, 443, 607, 671, 695, 770
AluI AGCT 7 cut(s) 278, 404, 443, 607, 671, 695, 770
Alw26I GTCTC 3 cut(s) 69, 420, 732
Aor13HI TCCGGA 1 cut(s) 777
AoxI GGCC 1 cut(s) 340
ApeKI GCWGC 2 cut(s) 275, 604
ApoI RAATTY 2 cut(s) 172, 460
AspLEI GCGC 2 cut(s) 269, 378
AspS9I GGNCC 1 cut(s) 341
AsuHPI GGTGA 1 cut(s) 609
BanI GGYRCC 1 cut(s) 375
BanII GRGCYC 1 cut(s) 332
BbvI GCAGC 2 cut(s) 287, 616
BccI CCATC 1 cut(s) 812
BciT130I CCWGG 3 cut(s) 211, 518, 529
BclI TGATCA 1 cut(s) 955
BcoDI GTCTC 3 cut(s) 69, 420, 732
BfaI CTAG 1 cut(s) 1003
BfmI CTRYAG 1 cut(s) 602
BfoI RGCGCY 1 cut(s) 379
BglII AGATCT 1 cut(s) 999
BisI GCNGC 3 cut(s) 62, 276, 605
BlsI GCNGC 3 cut(s) 63, 277, 606
BmcAI AGTACT 1 cut(s) 589
Bme1390I CCNGG 3 cut(s) 211, 518, 529
BmgT120I GGNCC 1 cut(s) 341
BmiI GGNNCC 2 cut(s) 331, 377
BmrFI CCNGG 3 cut(s) 211, 518, 529
BmsI GCATC 2 cut(s) 223, 906
BplI GAGNNNNNCTC 2 cut(s) 634, 666
BpuEI CTTGAG 1 cut(s) 750
BsaBI GATNNNNATC 1 cut(s) 471
BsaHI GRCGYC 1 cut(s) 376
BsaWI WCCGGW 1 cut(s) 777
Bsc4I CCNNNNNNNGG 3 cut(s) 325, 326, 385
Bse1I ACTGG 2 cut(s) 33, 830
Bse3DI GCAATG 1 cut(s) 846
Bse8I GATNNNNATC 1 cut(s) 471
BseAI TCCGGA 1 cut(s) 777
BseBI CCWGG 3 cut(s) 211, 518, 529
BseGI GGATG 3 cut(s) 106, 238, 817
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 3 cut(s) 325, 326, 385
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 2 cut(s) 33, 830
BseXI GCAGC 2 cut(s) 287, 616
BshFI GGCC 1 cut(s) 342
BshNI GGYRCC 1 cut(s) 375
BsiSI CCGG 1 cut(s) 778
BslI CCNNNNNNNGG 3 cut(s) 325, 326, 385
BsmAI GTCTC 3 cut(s) 69, 420, 732
BsnI GGCC 1 cut(s) 342
Bsp1286I GDGCHC 1 cut(s) 332
Bsp13I TCCGGA 1 cut(s) 777
Bsp143I GATC 5 cut(s) 256, 334, 955, 991, 999
BspACI CCGC 3 cut(s) 61, 890, 902
BspANI GGCC 1 cut(s) 342
BspCNI CTCAG 1 cut(s) 145
BspEI TCCGGA 1 cut(s) 777
BspLI GGNNCC 2 cut(s) 331, 377
BspMAI CTGCAG 1 cut(s) 606
BspT107I GGYRCC 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 846
BsrI ACTGG 2 cut(s) 33, 830
BssMI GATC 5 cut(s) 256, 334, 955, 991, 999
BssNI GRCGYC 1 cut(s) 376
Bst2UI CCWGG 3 cut(s) 211, 518, 529
Bst4CI ACNGT 3 cut(s) 50, 127, 507
Bst6I CTCTTC 1 cut(s) 872
BstACI GRCGYC 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 3 cut(s) 38, 132, 859
BstF5I GGATG 3 cut(s) 106, 238, 817
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 2 cut(s) 269, 378
BstKTI GATC 5 cut(s) 259, 337, 958, 994, 1002
BstMAI GTCTC 3 cut(s) 69, 420, 732
BstMBI GATC 5 cut(s) 256, 334, 955, 991, 999
BstMWI GCNNNNNNNGC 5 cut(s) 13, 275, 604, 701, 710
BstNI CCWGG 3 cut(s) 211, 518, 529
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 3 cut(s) 209, 516, 527
BstSFI CTRYAG 1 cut(s) 602
BstV1I GCAGC 2 cut(s) 287, 616
BstX2I RGATCY 1 cut(s) 999
BstYI RGATCY 1 cut(s) 999
BsuRI GGCC 1 cut(s) 342
BtsCI GGATG 3 cut(s) 106, 238, 817
Cac8I GCNNGC 1 cut(s) 265
CfoI GCGC 2 cut(s) 269, 378
Cfr13I GGNCC 1 cut(s) 341
CsiI ACCWGGT 1 cut(s) 516
Csp6I GTAC 2 cut(s) 136, 588
CviAII CATG 3 cut(s) 139, 338, 887
CviQI GTAC 2 cut(s) 136, 588
DdeI CTNAG 3 cut(s) 38, 132, 859
DinI GGCGCC 1 cut(s) 377
DpnI GATC 5 cut(s) 258, 336, 957, 993, 1001
DpnII GATC 5 cut(s) 256, 334, 955, 991, 999
DrdI GACNNNNNNGTC 1 cut(s) 48
DseDI GACNNNNNNGTC 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 872
EarI CTCTTC 1 cut(s) 872
Eco24I GRGCYC 1 cut(s) 332
EcoRII CCWGG 3 cut(s) 209, 516, 527
EcoT38I GRGCYC 1 cut(s) 332
EgeI GGCGCC 1 cut(s) 377
EheI GGCGCC 1 cut(s) 377
FaeI CATG 3 cut(s) 142, 341, 890
FalI AAGNNNNNCTT 4 cut(s) 373, 405, 577, 609
FatI CATG 3 cut(s) 138, 337, 886
FbaI TGATCA 1 cut(s) 955
Fnu4HI GCNGC 3 cut(s) 62, 276, 605
FokI GGATG 3 cut(s) 113, 245, 824
FriOI GRGCYC 1 cut(s) 332
Fsp4HI GCNGC 3 cut(s) 62, 276, 605
FspBI CTAG 1 cut(s) 1003
GlaI GCGC 2 cut(s) 268, 377
GluI GCNGC 3 cut(s) 62, 276, 605
HaeII RGCGCY 1 cut(s) 379
HaeIII GGCC 1 cut(s) 342
HapII CCGG 1 cut(s) 778
HhaI GCGC 2 cut(s) 269, 378
Hin1I GRCGYC 1 cut(s) 376
Hin1II CATG 3 cut(s) 142, 341, 890
Hin6I GCGC 2 cut(s) 267, 376
HinP1I GCGC 2 cut(s) 267, 376
HindIII AAGCTT 1 cut(s) 693
HinfI GANTC 2 cut(s) 623, 763
HpaII CCGG 1 cut(s) 778
HphI GGTGA 1 cut(s) 609
Hpy188I TCNGA 2 cut(s) 334, 955
Hpy188III TCNNGA 7 cut(s) 53, 308, 760, 778, 874, 959, 995
HpyCH4III ACNGT 3 cut(s) 50, 127, 507
HpyCH4V TGCA 5 cut(s) 275, 598, 604, 637, 948
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 275, 604, 701, 710
HpyF3I CTNAG 3 cut(s) 38, 132, 859
Hsp92I GRCGYC 1 cut(s) 376
Hsp92II CATG 3 cut(s) 142, 341, 890
HspAI GCGC 2 cut(s) 267, 376
KasI GGCGCC 1 cut(s) 375
Kpn2I TCCGGA 1 cut(s) 777
Ksp22I TGATCA 1 cut(s) 955
Kzo9I GATC 5 cut(s) 256, 334, 955, 991, 999
LmnI GCTCC 1 cut(s) 335
Lsp1109I GCAGC 2 cut(s) 287, 616
LweI GCATC 2 cut(s) 223, 906
MabI ACCWGGT 1 cut(s) 516
MaeI CTAG 1 cut(s) 1003
MaeIII GTNAC 3 cut(s) 50, 127, 985
MalI GATC 5 cut(s) 258, 336, 957, 993, 1001
MboI GATC 5 cut(s) 256, 334, 955, 991, 999
MboII GAAGA 2 cut(s) 618, 889
MfeI CAATTG 1 cut(s) 721
MflI RGATCY 1 cut(s) 999
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 9 cut(s) 87, 107, 155, 172, 460, 484, 654, 721, 804
Mly113I GGCGCC 1 cut(s) 376
MlyI GAGTC 1 cut(s) 757
MnlI CCTC 5 cut(s) 326, 444, 682, 774, 979
MroI TCCGGA 1 cut(s) 777
MseI TTAA 7 cut(s) 81, 393, 429, 483, 522, 576, 807
MslI CAYNNNNRTG 1 cut(s) 851
MspI CCGG 1 cut(s) 778
MspR9I CCNGG 3 cut(s) 211, 518, 529
MunI CAATTG 1 cut(s) 721
MvaI CCWGG 3 cut(s) 211, 518, 529
MwoI GCNNNNNNNGC 5 cut(s) 13, 275, 604, 701, 710
NarI GGCGCC 1 cut(s) 376
NdeII GATC 5 cut(s) 256, 334, 955, 991, 999
NlaIII CATG 3 cut(s) 142, 341, 890
NlaIV GGNNCC 2 cut(s) 331, 377
NmuCI GTSAC 1 cut(s) 50
NspI RCATGY 1 cut(s) 142
PciI ACATGT 1 cut(s) 138
PfeI GAWTC 1 cut(s) 623
PfoI TCCNGGA 1 cut(s) 527
PkrI GCNGC 3 cut(s) 63, 277, 606
PleI GAGTC 1 cut(s) 757
PpsI GAGTC 1 cut(s) 757
PscI ACATGT 1 cut(s) 138
Psp6I CCWGG 3 cut(s) 209, 516, 527
PspGI CCWGG 3 cut(s) 209, 516, 527
PspN4I GGNNCC 2 cut(s) 331, 377
PspPI GGNCC 1 cut(s) 341
PstI CTGCAG 1 cut(s) 606
PsuI RGATCY 1 cut(s) 999
RsaI GTAC 2 cut(s) 137, 589
RsaNI GTAC 2 cut(s) 136, 588
RseI CAYNNNNRTG 1 cut(s) 851
SaqAI TTAA 7 cut(s) 81, 393, 429, 483, 522, 576, 807
SatI GCNGC 3 cut(s) 62, 276, 605
Sau3AI GATC 5 cut(s) 256, 334, 955, 991, 999
Sau96I GGNCC 1 cut(s) 341
ScaI AGTACT 1 cut(s) 589
SchI GAGTC 1 cut(s) 757
ScrFI CCNGG 3 cut(s) 211, 518, 529
SduI GDGCHC 1 cut(s) 332
SexAI ACCWGGT 1 cut(s) 516
SfaNI GCATC 2 cut(s) 223, 906
SfcI CTRYAG 1 cut(s) 602
SfoI GGCGCC 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 851
SmlI CTYRAG 1 cut(s) 765
SmoI CTYRAG 1 cut(s) 765
Sse9I AATT 9 cut(s) 87, 107, 155, 172, 460, 484, 654, 721, 804
SsiI CCGC 3 cut(s) 61, 890, 902
SspDI GGCGCC 1 cut(s) 375
SspI AATATT 1 cut(s) 448
SspMI CTAG 1 cut(s) 1003
StyD4I CCNGG 3 cut(s) 209, 516, 527
TaaI ACNGT 3 cut(s) 50, 127, 507
TaqI TCGA 1 cut(s) 914
TasI AATT 9 cut(s) 87, 107, 155, 172, 460, 484, 654, 721, 804
TatI WGTACW 2 cut(s) 135, 587
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 1 cut(s) 623
Tru1I TTAA 7 cut(s) 81, 393, 429, 483, 522, 576, 807
Tru9I TTAA 7 cut(s) 81, 393, 429, 483, 522, 576, 807
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 2 cut(s) 275, 604
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 7 cut(s) 17, 117, 185, 261, 499, 626, 875
XapI RAATTY 2 cut(s) 172, 460
XceI RCATGY 1 cut(s) 142
XspI CTAG 1 cut(s) 1003
ZrmI AGTACT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.