ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 182 |
| AccB1I | GGYRCC | 1 cut(s) | 405 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 201, 716 |
| AciI | CCGC | 1 cut(s) | 352 |
| AclWI | GGATC | 1 cut(s) | 309 |
| AcsI | RAATTY | 4 cut(s) | 110, 257, 448, 560 |
| AcuI | CTGAAG | 1 cut(s) | 669 |
| AfaI | GTAC | 4 cut(s) | 73, 401, 423, 601 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 201, 627, 716 |
| AgsI | TTSAA | 9 cut(s) | 116, 287, 388, 433, 447, 453, 560, 566, 577 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 519, 551 |
| AluBI | AGCT | 3 cut(s) | 105, 596, 831 |
| AluI | AGCT | 3 cut(s) | 105, 596, 831 |
| Alw26I | GTCTC | 1 cut(s) | 85 |
| AlwI | GGATC | 1 cut(s) | 309 |
| Ama87I | CYCGRG | 1 cut(s) | 734 |
| AoxI | GGCC | 1 cut(s) | 673 |
| ApeKI | GCWGC | 3 cut(s) | 349, 617, 705 |
| ApoI | RAATTY | 4 cut(s) | 110, 257, 448, 560 |
| AspLEI | GCGC | 2 cut(s) | 146, 725 |
| AspS9I | GGNCC | 2 cut(s) | 355, 674 |
| AsuC2I | CCSGG | 1 cut(s) | 754 |
| AsuHPI | GGTGA | 1 cut(s) | 536 |
| AvaI | CYCGRG | 1 cut(s) | 734 |
| AvaII | GGWCC | 1 cut(s) | 355 |
| BanI | GGYRCC | 1 cut(s) | 405 |
| BbsI | GAAGAC | 1 cut(s) | 490 |
| BbvI | GCAGC | 3 cut(s) | 361, 629, 692 |
| BccI | CCATC | 5 cut(s) | 333, 471, 557, 687, 718 |
| BceAI | ACGGC | 1 cut(s) | 761 |
| BclI | TGATCA | 1 cut(s) | 49 |
| BcnI | CCSGG | 1 cut(s) | 754 |
| BcoDI | GTCTC | 1 cut(s) | 85 |
| BfaI | CTAG | 3 cut(s) | 102, 417, 741 |
| BfoI | RGCGCY | 1 cut(s) | 726 |
| BisI | GCNGC | 3 cut(s) | 350, 618, 706 |
| BlsI | GCNGC | 3 cut(s) | 351, 619, 707 |
| BmcAI | AGTACT | 1 cut(s) | 401 |
| Bme1390I | CCNGG | 1 cut(s) | 754 |
| Bme18I | GGWCC | 1 cut(s) | 355 |
| BmeT110I | CYCGRG | 1 cut(s) | 734 |
| BmgT120I | GGNCC | 2 cut(s) | 355, 674 |
| BmiI | GGNNCC | 3 cut(s) | 356, 407, 676 |
| BmrFI | CCNGG | 1 cut(s) | 754 |
| BmsI | GCATC | 1 cut(s) | 692 |
| BpiI | GAAGAC | 1 cut(s) | 490 |
| BpmI | CTGGAG | 1 cut(s) | 326 |
| BpuMI | CCSGG | 1 cut(s) | 754 |
| BsaBI | GATNNNNATC | 1 cut(s) | 54 |
| BsaJI | CCNNGG | 1 cut(s) | 735 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 201, 627, 716 |
| Bse1I | ACTGG | 2 cut(s) | 206, 407 |
| Bse8I | GATNNNNATC | 1 cut(s) | 54 |
| BseDI | CCNNGG | 1 cut(s) | 735 |
| BseGI | GGATG | 3 cut(s) | 136, 325, 707 |
| BseJI | GATNNNNATC | 1 cut(s) | 54 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 201, 627, 716 |
| BseMII | CTCAG | 1 cut(s) | 450 |
| BseNI | ACTGG | 2 cut(s) | 206, 407 |
| BseXI | GCAGC | 3 cut(s) | 361, 629, 692 |
| BshFI | GGCC | 1 cut(s) | 675 |
| BshNI | GGYRCC | 1 cut(s) | 405 |
| BsiHKCI | CYCGRG | 1 cut(s) | 734 |
| BsiSI | CCGG | 1 cut(s) | 753 |
| BslFI | GGGAC | 2 cut(s) | 170, 368 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 201, 627, 716 |
| BsmAI | GTCTC | 1 cut(s) | 85 |
| BsmBI | CGTCTC | 1 cut(s) | 85 |
| BsmFI | GGGAC | 2 cut(s) | 170, 368 |
| BsnI | GGCC | 1 cut(s) | 675 |
| BsoBI | CYCGRG | 1 cut(s) | 734 |
| Bsp1407I | TGTACA | 1 cut(s) | 71 |
| Bsp143I | GATC | 2 cut(s) | 49, 301 |
| BspACI | CCGC | 1 cut(s) | 352 |
| BspANI | GGCC | 1 cut(s) | 675 |
| BspCNI | CTCAG | 1 cut(s) | 449 |
| BspLI | GGNNCC | 3 cut(s) | 356, 407, 676 |
| BspPI | GGATC | 1 cut(s) | 309 |
| BspQI | GCTCTTC | 1 cut(s) | 339 |
| BspT107I | GGYRCC | 1 cut(s) | 405 |
| BsrGI | TGTACA | 1 cut(s) | 71 |
| BsrI | ACTGG | 2 cut(s) | 206, 407 |
| BssECI | CCNNGG | 1 cut(s) | 735 |
| BssMI | GATC | 2 cut(s) | 49, 301 |
| Bst4CI | ACNGT | 1 cut(s) | 426 |
| Bst6I | CTCTTC | 2 cut(s) | 339, 645 |
| BstAUI | TGTACA | 1 cut(s) | 71 |
| BstC8I | GCNNGC | 1 cut(s) | 98 |
| BstDEI | CTNAG | 1 cut(s) | 436 |
| BstF5I | GGATG | 3 cut(s) | 136, 325, 707 |
| BstH2I | RGCGCY | 1 cut(s) | 726 |
| BstHHI | GCGC | 2 cut(s) | 146, 725 |
| BstKTI | GATC | 2 cut(s) | 52, 304 |
| BstMAI | GTCTC | 1 cut(s) | 85 |
| BstMBI | GATC | 2 cut(s) | 49, 301 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 102, 729, 845 |
| BstSCI | CCNGG | 1 cut(s) | 752 |
| BstV1I | GCAGC | 3 cut(s) | 361, 629, 692 |
| BstV2I | GAAGAC | 1 cut(s) | 490 |
| BstX2I | RGATCY | 1 cut(s) | 301 |
| BstYI | RGATCY | 1 cut(s) | 301 |
| BsuRI | GGCC | 1 cut(s) | 675 |
| BtsCI | GGATG | 3 cut(s) | 136, 325, 707 |
| BtsIMutI | CAGTG | 1 cut(s) | 431 |
| Cac8I | GCNNGC | 1 cut(s) | 98 |
| CfoI | GCGC | 2 cut(s) | 146, 725 |
| Cfr13I | GGNCC | 2 cut(s) | 355, 674 |
| CseI | GACGC | 1 cut(s) | 102 |
| Csp6I | GTAC | 4 cut(s) | 72, 400, 422, 600 |
| CviAII | CATG | 2 cut(s) | 81, 671 |
| CviQI | GTAC | 4 cut(s) | 72, 400, 422, 600 |
| DdeI | CTNAG | 1 cut(s) | 436 |
| DpnI | GATC | 2 cut(s) | 51, 303 |
| DpnII | GATC | 2 cut(s) | 49, 301 |
| DraI | TTTAAA | 1 cut(s) | 109 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 182 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 182 |
| Eam1104I | CTCTTC | 2 cut(s) | 339, 645 |
| EarI | CTCTTC | 2 cut(s) | 339, 645 |
| Eco47I | GGWCC | 1 cut(s) | 355 |
| Eco57I | CTGAAG | 1 cut(s) | 669 |
| Eco88I | CYCGRG | 1 cut(s) | 734 |
| EcoO109I | RGGNCCY | 1 cut(s) | 355 |
| Esp3I | CGTCTC | 1 cut(s) | 85 |
| FaeI | CATG | 2 cut(s) | 84, 674 |
| FaiI | YATR | 7 cut(s) | 41, 82, 363, 641, 672, 783, 834 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 89, 121 |
| FaqI | GGGAC | 2 cut(s) | 170, 368 |
| FatI | CATG | 2 cut(s) | 80, 670 |
| FauI | CCCGC | 1 cut(s) | 345 |
| FbaI | TGATCA | 1 cut(s) | 49 |
| Fnu4HI | GCNGC | 3 cut(s) | 350, 618, 706 |
| FokI | GGATG | 3 cut(s) | 143, 312, 714 |
| Fsp4HI | GCNGC | 3 cut(s) | 350, 618, 706 |
| FspBI | CTAG | 3 cut(s) | 102, 417, 741 |
| GlaI | GCGC | 2 cut(s) | 145, 724 |
| GluI | GCNGC | 3 cut(s) | 350, 618, 706 |
| GsuI | CTGGAG | 1 cut(s) | 326 |
| HaeII | RGCGCY | 1 cut(s) | 726 |
| HaeIII | GGCC | 1 cut(s) | 675 |
| HapII | CCGG | 1 cut(s) | 753 |
| HgaI | GACGC | 1 cut(s) | 102 |
| HhaI | GCGC | 2 cut(s) | 146, 725 |
| Hin1II | CATG | 2 cut(s) | 84, 674 |
| Hin6I | GCGC | 2 cut(s) | 144, 723 |
| HinP1I | GCGC | 2 cut(s) | 144, 723 |
| HincII | GTYRAC | 1 cut(s) | 317 |
| HindII | GTYRAC | 1 cut(s) | 317 |
| HinfI | GANTC | 6 cut(s) | 14, 116, 228, 456, 499, 582 |
| HpaII | CCGG | 1 cut(s) | 753 |
| HphI | GGTGA | 1 cut(s) | 536 |
| Hpy166II | GTNNAC | 3 cut(s) | 175, 251, 317 |
| Hpy188I | TCNGA | 3 cut(s) | 24, 49, 343 |
| Hpy188III | TCNNGA | 3 cut(s) | 305, 417, 453 |
| Hpy8I | GTNNAC | 3 cut(s) | 175, 251, 317 |
| HpyAV | CCTTC | 1 cut(s) | 677 |
| HpyCH4III | ACNGT | 1 cut(s) | 426 |
| HpyCH4V | TGCA | 1 cut(s) | 478 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 102, 729, 845 |
| HpyF3I | CTNAG | 1 cut(s) | 436 |
| Hsp92II | CATG | 2 cut(s) | 84, 674 |
| HspAI | GCGC | 2 cut(s) | 144, 723 |
| Ksp22I | TGATCA | 1 cut(s) | 49 |
| Kzo9I | GATC | 2 cut(s) | 49, 301 |
| LguI | GCTCTTC | 1 cut(s) | 339 |
| LmnI | GCTCC | 3 cut(s) | 151, 614, 828 |
| LpnPI | CCDG | 9 cut(s) | 187, 290, 388, 423, 538, 582, 612, 675, 766 |
| Lsp1109I | GCAGC | 3 cut(s) | 361, 629, 692 |
| LweI | GCATC | 1 cut(s) | 692 |
| MaeI | CTAG | 3 cut(s) | 102, 417, 741 |
| MaeIII | GTNAC | 2 cut(s) | 643, 695 |
| MalI | GATC | 2 cut(s) | 51, 303 |
| MboI | GATC | 2 cut(s) | 49, 301 |
| MboII | GAAGA | 5 cut(s) | 356, 404, 451, 495, 662 |
| MfeI | CAATTG | 1 cut(s) | 714 |
| MflI | RGATCY | 1 cut(s) | 301 |
| MlyI | GAGTC | 1 cut(s) | 8 |
| MmeI | TCCRAC | 1 cut(s) | 224 |
| MnlI | CCTC | 9 cut(s) | 151, 224, 292, 301, 483, 514, 730, 818, 829 |
| MseI | TTAA | 4 cut(s) | 32, 108, 588, 850 |
| MspA1I | CMGCKG | 2 cut(s) | 352, 596 |
| MspI | CCGG | 1 cut(s) | 753 |
| MspR9I | CCNGG | 1 cut(s) | 754 |
| MunI | CAATTG | 1 cut(s) | 714 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 102, 729, 845 |
| NciI | CCSGG | 1 cut(s) | 754 |
| NdeII | GATC | 2 cut(s) | 49, 301 |
| NlaIII | CATG | 2 cut(s) | 84, 674 |
| NlaIV | GGNNCC | 3 cut(s) | 356, 407, 676 |
| NmuCI | GTSAC | 1 cut(s) | 695 |
| PciSI | GCTCTTC | 1 cut(s) | 339 |
| PfeI | GAWTC | 5 cut(s) | 116, 228, 456, 499, 582 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 201, 716 |
| PfoI | TCCNGGA | 1 cut(s) | 752 |
| PkrI | GCNGC | 3 cut(s) | 351, 619, 707 |
| PleI | GAGTC | 1 cut(s) | 8 |
| PpsI | GAGTC | 1 cut(s) | 8 |
| PpuMI | RGGWCCY | 1 cut(s) | 355 |
| Psp5II | RGGWCCY | 1 cut(s) | 355 |
| PspN4I | GGNNCC | 3 cut(s) | 356, 407, 676 |
| PspPI | GGNCC | 2 cut(s) | 355, 674 |
| PspPPI | RGGWCCY | 1 cut(s) | 355 |
| PsuI | RGATCY | 1 cut(s) | 301 |
| PvuII | CAGCTG | 1 cut(s) | 596 |
| RsaI | GTAC | 4 cut(s) | 73, 401, 423, 601 |
| RsaNI | GTAC | 4 cut(s) | 72, 400, 422, 600 |
| SapI | GCTCTTC | 1 cut(s) | 339 |
| SaqAI | TTAA | 4 cut(s) | 32, 108, 588, 850 |
| SatI | GCNGC | 3 cut(s) | 350, 618, 706 |
| Sau3AI | GATC | 2 cut(s) | 49, 301 |
| Sau96I | GGNCC | 2 cut(s) | 355, 674 |
| ScaI | AGTACT | 1 cut(s) | 401 |
| SchI | GAGTC | 1 cut(s) | 8 |
| ScrFI | CCNGG | 1 cut(s) | 754 |
| SfaNI | GCATC | 1 cut(s) | 692 |
| SinI | GGWCC | 1 cut(s) | 355 |
| SsiI | CCGC | 1 cut(s) | 352 |
| SspI | AATATT | 1 cut(s) | 774 |
| SspMI | CTAG | 3 cut(s) | 102, 417, 741 |
| StyD4I | CCNGG | 1 cut(s) | 752 |
| TaaI | ACNGT | 1 cut(s) | 426 |
| TaqI | TCGA | 1 cut(s) | 12 |
| TatI | WGTACW | 3 cut(s) | 71, 399, 421 |
| TfiI | GAWTC | 5 cut(s) | 116, 228, 456, 499, 582 |
| Tru1I | TTAA | 4 cut(s) | 32, 108, 588, 850 |
| Tru9I | TTAA | 4 cut(s) | 32, 108, 588, 850 |
| TscAI | CASTG | 1 cut(s) | 431 |
| TseFI | GTSAC | 1 cut(s) | 695 |
| TseI | GCWGC | 3 cut(s) | 349, 617, 705 |
| Tsp45I | GTSAC | 1 cut(s) | 695 |
| TspDTI | ATGAA | 3 cut(s) | 17, 659, 671 |
| TspGWI | ACGGA | 2 cut(s) | 293, 714 |
| TspRI | CASTG | 1 cut(s) | 431 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 201, 716 |
| VpaK11BI | GGWCC | 1 cut(s) | 355 |
| XapI | RAATTY | 4 cut(s) | 110, 257, 448, 560 |
| XbaI | TCTAGA | 1 cut(s) | 416 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 686 |
| XspI | CTAG | 3 cut(s) | 102, 417, 741 |
| ZrmI | AGTACT | 1 cut(s) | 401 |