Rh1DG091800

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000147
Physical Location & Seq
Forward (+)
17280586 .. 17280969
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG091800.1

Sequence Viewer

Length: 384 bp
ATGTCAGTATGGAAATCAAATCTCTCAGGTTGCAGCCGTGCCTTAAAGTCATGGAGTAGAAAAAAAATTTCCAACCCCACCACTCAAGTTGCAGAGAAGCTTGTTGAATTGGAAAAGCTTTATGAGTCCAATCAGCCTGACGTTCTGCAGCAGATTCAGAATATTACTTCCCAGATCACCAATCTCTGGACCCAGGATGAAATGCACTGGCAGCAGCGTTCCAGGGTAAATTGGCTAAAGTTGGGAGATCGGAACACGAGTTTTTTCCATCACTCAACTCTACAGAGAAGACAATTTAACAAAGTCTTGCGCCTTCAAGATTCAAATGGGGATTGGTTGGAAACTGATAGAGAAATTACCAATCTTTTCTCTGCTTATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

127

Amino Acids

15.13

Weight (kDa)

9.46

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 186
AcsI RAATTY 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 186
AgsI TTSAA 3 cut(s) 107, 317, 324
AjnI CCWGG 2 cut(s) 192, 221
AluBI AGCT 2 cut(s) 100, 118
AluI AGCT 2 cut(s) 100, 118
ApeKI GCWGC 4 cut(s) 33, 148, 211, 214
ApoI RAATTY 1 cut(s) 66
AspLEI GCGC 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 189
BauI CACGAG 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 295
BbvI GCAGC 4 cut(s) 45, 160, 223, 226
BccI CCATC 1 cut(s) 276
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 2 cut(s) 194, 223
BfmI CTRYAG 2 cut(s) 146, 281
BisI GCNGC 4 cut(s) 34, 149, 212, 215
BlsI GCNGC 4 cut(s) 35, 150, 213, 216
Bme1390I CCNGG 2 cut(s) 194, 223
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 191
BmrFI CCNGG 2 cut(s) 194, 223
BpiI GAAGAC 1 cut(s) 295
BpuEI CTTGAG 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 212
BseBI CCWGG 2 cut(s) 194, 223
BseDI CCNNGG 2 cut(s) 192, 222
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 212
BseXI GCAGC 4 cut(s) 45, 160, 223, 226
BslI CCNNNNNNNGG 1 cut(s) 186
Bsp143I GATC 2 cut(s) 174, 247
BspCNI CTCAG 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 191
BspMAI CTGCAG 1 cut(s) 150
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 192, 222
BssMI GATC 2 cut(s) 174, 247
BssSI CACGAG 1 cut(s) 256
Bst2BI CACGAG 1 cut(s) 256
Bst2UI CCWGG 2 cut(s) 194, 223
BstDEI CTNAG 1 cut(s) 25
BstF5I GGATG 1 cut(s) 202
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 2 cut(s) 177, 250
BstMBI GATC 2 cut(s) 174, 247
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstNI CCWGG 2 cut(s) 194, 223
BstSCI CCNGG 2 cut(s) 192, 221
BstSFI CTRYAG 2 cut(s) 146, 281
BstV1I GCAGC 4 cut(s) 45, 160, 223, 226
BstV2I GAAGAC 1 cut(s) 295
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 205
CfoI GCGC 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 189
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 1 cut(s) 51
CviJI RGCY 5 cut(s) 36, 100, 118, 136, 235
CviKI_1 RGCY 5 cut(s) 36, 100, 118, 136, 235
DdeI CTNAG 1 cut(s) 25
DpnI GATC 2 cut(s) 176, 249
DpnII GATC 2 cut(s) 174, 247
Eco47I GGWCC 1 cut(s) 189
EcoRII CCWGG 2 cut(s) 192, 221
FaeI CATG 1 cut(s) 54
FaiI YATR 3 cut(s) 10, 52, 123
FatI CATG 1 cut(s) 50
Fnu4HI GCNGC 4 cut(s) 34, 149, 212, 215
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 4 cut(s) 34, 149, 212, 215
GlaI GCGC 1 cut(s) 311
GluI GCNGC 4 cut(s) 34, 149, 212, 215
HhaI GCGC 1 cut(s) 312
Hin1II CATG 1 cut(s) 54
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HindIII AAGCTT 2 cut(s) 98, 116
HinfI GANTC 3 cut(s) 125, 154, 320
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 2 cut(s) 159, 252
Hpy188III TCNNGA 2 cut(s) 187, 317
HpyAV CCTTC 1 cut(s) 323
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 4 cut(s) 33, 92, 148, 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 1 cut(s) 54
HspAI GCGC 1 cut(s) 310
Kzo9I GATC 2 cut(s) 174, 247
LpnPI CCDG 9 cut(s) 12, 150, 172, 179, 185, 193, 206, 208, 235
Lsp1109I GCAGC 4 cut(s) 45, 160, 223, 226
MaeII ACGT 1 cut(s) 141
MalI GATC 2 cut(s) 176, 249
MboI GATC 2 cut(s) 174, 247
MboII GAAGA 1 cut(s) 300
MluCI AATT 5 cut(s) 66, 107, 229, 293, 354
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 2 cut(s) 96, 318
MseI TTAA 2 cut(s) 44, 297
MspR9I CCNGG 2 cut(s) 194, 223
MvaI CCWGG 2 cut(s) 194, 223
MwoI GCNNNNNNNGC 1 cut(s) 211
NdeII GATC 2 cut(s) 174, 247
NlaIII CATG 1 cut(s) 54
NlaIV GGNNCC 1 cut(s) 191
PfeI GAWTC 2 cut(s) 154, 320
PflMI CCANNNNNTGG 1 cut(s) 186
PkrI GCNGC 4 cut(s) 35, 150, 213, 216
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Psp6I CCWGG 2 cut(s) 192, 221
PspGI CCWGG 2 cut(s) 192, 221
PspN4I GGNNCC 1 cut(s) 191
PspPI GGNCC 1 cut(s) 189
PstI CTGCAG 1 cut(s) 150
SaqAI TTAA 2 cut(s) 44, 297
SatI GCNGC 4 cut(s) 34, 149, 212, 215
Sau3AI GATC 2 cut(s) 174, 247
Sau96I GGNCC 1 cut(s) 189
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 194, 223
SetI ASST 4 cut(s) 31, 102, 120, 144
SfcI CTRYAG 2 cut(s) 146, 281
SinI GGWCC 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 5 cut(s) 66, 107, 229, 293, 354
SspI AATATT 1 cut(s) 163
StyD4I CCNGG 2 cut(s) 192, 221
TaiI ACGT 1 cut(s) 144
TasI AATT 5 cut(s) 66, 107, 229, 293, 354
TfiI GAWTC 2 cut(s) 154, 320
Tru1I TTAA 2 cut(s) 44, 297
Tru9I TTAA 2 cut(s) 44, 297
TscAI CASTG 1 cut(s) 212
TseI GCWGC 4 cut(s) 33, 148, 211, 214
TspDTI ATGAA 1 cut(s) 213
TspRI CASTG 1 cut(s) 212
Van91I CCANNNNNTGG 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 189
XapI RAATTY 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.