pycom03g01520

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000147
Physical Location & Seq
Reverse (-)
1142504 .. 1144216
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g01520.1

Sequence Viewer

Length: 1713 bp
ATGAAAGATCATAGAATTCTAGGGGTGAGGAGGAGATTGGGTTATGTTCATGGCTTTGATGTTTCGCCAGTTGGAAGTTCTGGAGGATTGAGCTTGTGGTGGGAGGACAATCTGGAGGTTAATATTATCTTTTCGTCCAAGAATATTATTGATGCTGTGATGAAAATTAAAGGGCAAACGCATTGGAGTCGGATTACGGGTGTGTACGGAACGCCGTATAGAGTTGAGAAAAATCTGTTTTGGGAATGGATGGTTAACCACTTTACCCCAACGGACATTCCTTGGATTTGTGGCGGGGACTTCAACGAATTCCTGTGGGATCATGAGAAGTCTGGTGGAGTTGAGGTTTTGTACAACAGGCCAAGGTTCTTAGAAGAGTTTCTGTCTTCCTCCCAGCTGATGGACTTGGGTTTCAATGGGCCGGCCTTTACGTGGAGAGGGTTGAGAAAAGGGGATTGGGTGGAGGAGAGGCTAGACAGGGTCATGGCGAATGAGAAGTGGCAGCAACTCTGGCCGAACTCCCAAGTTATGCATGAAACGGTTTTAGCATCAGACCACTGCCCAGTTATACTTATTTCTAATATTGAAGGGCAGAAAGGAAGGAAGGTATTCAGGTTTGAGGCGTATTGGGTCTCGGAGGAAGAGTGTAAGAATTTGGTGGAACAGTGCTGGGATAGGCGGCATAATGGCAGCCCTGTGAATAGGTGGGTGAGATCTTTAAACGATTGCCGTTATCGTTTAAGCAGGTGGAATCGCACTAAGTTTATGGGGCGAGGTAACAGGATCCATGATCTTCTTTCCCAGTTAGATTTGCTCCAGCGGGACTGGGGTCCAAACTATGATGAGATAAGGGAGATTTCTCGGCGGATTGATGAGTTAAGACTCCAAGAGGAGAGTTATTGGTGCCAGCGATCGAGGGTAAAATGGTTGAGGGAGGGGGATGCTAACACTCAGTTTTTTCACTCTTCAACCCTTCAGAGGCGGAGGAGAAATAAGATAGTGAAGCTTAGGGATGAGAATGGGAACTGGGTGGAGAATCCGTCTCAGGTGCGCCAATTGGTGGATAATCACTTCACTTCAGTTTTTAGCTCGGCAGGGGATCGTAACTGGGGGACGCTGCTAGATTGCATGAATCCCTCGATCTCGCCAGAAATGAATGAGGCGCTAATTGCACCAGTCACGGAGGAGGAGATAAAGGCGGCGGCTGGGAATATGGGAGGGCTTAAGGCTCCTGGCCCCGATGGTTTCCAGGGGATCTTTTATCAGACATACTGGGAGATTGTGAGGGAGGGTGTTTCTGCTTTGGTTAGAGATTTGATTCAGGATGCTGCGGGTTCGAGTTTGATAAATCAGACTCATGTGGTGCTGATTCCCAAAGTCCCGAACCCGGAAGTTGTGTCGCAATTCAGGCCGATTAGCCTGTGCAACTACTCGTACAAAATTCTGTCAAAGATTCTTGCTAACCGGTTGAAGGTATTATTACCTAAAATCATCTCTCCTTCTCAGAATGCTTTTGTGGCGGGTAGACAAATTCAGGACTGTATTGGCATAGCCCATGAGATGTTTCATTATCTGAAGGGAAGGAAAGCTCGGAATAGATTTGAAATGGGGATTAAACTTGATATGCAGAAGGCGTATGATAGGGTTGAATGGGATTTTTTGGATGCGGTAATGGAAAGAATGGGTTTTTGCAGTAGCTGGATCGATCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

571

Amino Acids

66.5

Weight (kDa)

8.56

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 461 - 569 2.6e-15 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 735
Acc36I ACCTGC 1 cut(s) 735
AccB1I GGYRCC 1 cut(s) 903
AccB7I CCANNNNNTGG 2 cut(s) 400, 1060
AccI GTMKAC 1 cut(s) 1525
AclWI GGATC 6 cut(s) 327, 778, 791, 1107, 1262, 1709
AcoI YGGCCR 1 cut(s) 512
AcsI RAATTY 5 cut(s) 15, 308, 652, 1440, 1530
AcuI CTGAAG 3 cut(s) 959, 1062, 1595
AfaI GTAC 3 cut(s) 206, 353, 1436
AfiI CCNNNNNNNGG 6 cut(s) 400, 432, 978, 1060, 1387, 1471
AflII CTTAAG 1 cut(s) 1223
AgeI ACCGGT 1 cut(s) 1464
AgsI TTSAA 7 cut(s) 304, 415, 587, 969, 1471, 1604, 1649
AjnI CCWGG 2 cut(s) 1231, 1248
AjuI GAANNNNNNNTTGG 2 cut(s) 439, 471
AluBI AGCT 6 cut(s) 93, 397, 1006, 1089, 1589, 1698
AluI AGCT 6 cut(s) 93, 397, 1006, 1089, 1589, 1698
Alw26I GTCTC 2 cut(s) 637, 1047
AlwI GGATC 6 cut(s) 327, 778, 791, 1107, 1262, 1709
AlwNI CAGNNNCTG 1 cut(s) 1698
AoxI GGCC 6 cut(s) 359, 419, 423, 512, 1234, 1409
ApeKI GCWGC 4 cut(s) 502, 690, 1117, 1328
ApoI RAATTY 5 cut(s) 15, 308, 652, 1440, 1530
AsiGI ACCGGT 1 cut(s) 1464
Asp700I GAANNNNTTC 2 cut(s) 378, 608
AspLEI GCGC 2 cut(s) 1053, 1165
AspS9I GGNCC 3 cut(s) 419, 830, 1235
AsuC2I CCSGG 1 cut(s) 1388
AsuHPI GGTGA 2 cut(s) 37, 721
AvaII GGWCC 1 cut(s) 830
BamHI GGATCC 1 cut(s) 783
BanI GGYRCC 1 cut(s) 903
BbsI GAAGAC 1 cut(s) 378
BbvI GCAGC 4 cut(s) 514, 702, 1104, 1315
BccI CCATC 3 cut(s) 244, 394, 1235
BceAI ACGGC 2 cut(s) 199, 714
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 2 cut(s) 1233, 1250
BcnI CCSGG 1 cut(s) 1388
BcoDI GTCTC 2 cut(s) 637, 1047
BfaI CTAG 3 cut(s) 20, 473, 1121
BfoI RGCGCY 1 cut(s) 1166
BfrI CTTAAG 1 cut(s) 1223
BfuAI ACCTGC 1 cut(s) 735
BglII AGATCT 1 cut(s) 713
BisI GCNGC 7 cut(s) 503, 680, 691, 1118, 1200, 1203, 1329
BlsI GCNGC 7 cut(s) 504, 681, 692, 1119, 1201, 1204, 1330
Bme1390I CCNGG 3 cut(s) 1233, 1250, 1388
Bme18I GGWCC 1 cut(s) 830
BmgT120I GGNCC 3 cut(s) 419, 830, 1235
BmiI GGNNCC 5 cut(s) 785, 831, 905, 1230, 1237
BmrFI CCNGG 3 cut(s) 1233, 1250, 1388
BmrI ACTGGG 6 cut(s) 557, 796, 835, 1036, 1117, 1282
BmsI GCATC 5 cut(s) 142, 557, 931, 1315, 1654
BmuI ACTGGG 6 cut(s) 557, 796, 835, 1036, 1117, 1282
BoxI GACNNNNGTC 1 cut(s) 828
BpiI GAAGAC 1 cut(s) 378
BpmI CTGGAG 3 cut(s) 102, 134, 800
Bpu10I CCTNAGC 1 cut(s) 1007
BpuMI CCSGG 1 cut(s) 1388
Bsa29I ATCGAT 1 cut(s) 1704
BsaAI YACGTR 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 637
BsaJI CCNNGG 3 cut(s) 281, 362, 1249
BsaWI WCCGGW 1 cut(s) 1464
BsaXI ACNNNNNCTCC 8 cut(s) 25, 55, 330, 360, 629, 659, 1025, 1055
Bsc4I CCNNNNNNNGG 6 cut(s) 400, 432, 978, 1060, 1387, 1471
Bse118I RCCGGY 2 cut(s) 421, 1464
Bse1I ACTGG 8 cut(s) 68, 563, 802, 830, 1031, 1112, 1175, 1277
BseBI CCWGG 2 cut(s) 1233, 1250
BseCI ATCGAT 1 cut(s) 1704
BseDI CCNNGG 3 cut(s) 281, 362, 1249
BseGI GGATG 5 cut(s) 255, 946, 1018, 1330, 1669
BseLI CCNNNNNNNGG 6 cut(s) 400, 432, 978, 1060, 1387, 1471
BseMII CTCAG 3 cut(s) 965, 1058, 1517
BseNI ACTGG 8 cut(s) 68, 563, 802, 830, 1031, 1112, 1175, 1277
BseRI GAGGAG 7 cut(s) 43, 46, 479, 905, 1000, 1199, 1202
BseXI GCAGC 4 cut(s) 514, 702, 1104, 1315
BseYI CCCAGC 3 cut(s) 393, 669, 1205
Bsh1285I CGRYCG 2 cut(s) 914, 1708
BshFI GGCC 6 cut(s) 361, 421, 425, 514, 1236, 1411
BshNI GGYRCC 1 cut(s) 903
BshTI ACCGGT 1 cut(s) 1464
BshVI ATCGAT 1 cut(s) 1704
BsiEI CGRYCG 2 cut(s) 914, 1708
BsiSI CCGG 3 cut(s) 422, 1388, 1465
BslFI GGGAC 4 cut(s) 311, 836, 1126, 1364
BslI CCNNNNNNNGG 6 cut(s) 400, 432, 978, 1060, 1387, 1471
BsmAI GTCTC 2 cut(s) 637, 1047
BsmBI CGTCTC 1 cut(s) 1047
BsmFI GGGAC 4 cut(s) 311, 836, 1126, 1364
BsmI GAATGC 1 cut(s) 1513
BsnI GGCC 6 cut(s) 361, 421, 425, 514, 1236, 1411
Bso31I GGTCTC 1 cut(s) 637
Bsp1407I TGTACA 1 cut(s) 351
BspANI GGCC 6 cut(s) 361, 421, 425, 514, 1236, 1411
BspCNI CTCAG 3 cut(s) 964, 1057, 1516
BspDI ATCGAT 1 cut(s) 1704
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 5 cut(s) 785, 831, 905, 1230, 1237
BspMI ACCTGC 1 cut(s) 735
BspPI GGATC 6 cut(s) 327, 778, 791, 1107, 1262, 1709
BspT107I GGYRCC 1 cut(s) 903
BspTI CTTAAG 1 cut(s) 1223
BspTNI GGTCTC 1 cut(s) 637
BsrFI RCCGGY 2 cut(s) 421, 1464
BsrGI TGTACA 1 cut(s) 351
BsrI ACTGG 8 cut(s) 68, 563, 802, 830, 1031, 1112, 1175, 1277
BssAI RCCGGY 2 cut(s) 421, 1464
BssECI CCNNGG 3 cut(s) 281, 362, 1249
BssT1I CCWWGG 2 cut(s) 281, 362
Bst2UI CCWGG 2 cut(s) 1233, 1250
Bst4CI ACNGT 3 cut(s) 541, 666, 1541
Bst6I CTCTTC 3 cut(s) 369, 636, 970
BstAFI CTTAAG 1 cut(s) 1223
BstAUI TGTACA 1 cut(s) 351
BstBAI YACGTR 1 cut(s) 432
BstC8I GCNNGC 2 cut(s) 423, 908
BstDEI CTNAG 6 cut(s) 370, 759, 951, 1007, 1044, 1503
BstF5I GGATG 5 cut(s) 255, 946, 1018, 1330, 1669
BstH2I RGCGCY 1 cut(s) 1166
BstHHI GCGC 2 cut(s) 1053, 1165
BstMAI GTCTC 2 cut(s) 637, 1047
BstMCI CGRYCG 2 cut(s) 914, 1708
BstMWI GCNNNNNNNGC 4 cut(s) 511, 1169, 1408, 1517
BstNI CCWGG 2 cut(s) 1233, 1250
BstPAI GACNNNNGTC 1 cut(s) 828
BstSCI CCNGG 3 cut(s) 1231, 1248, 1386
BstV1I GCAGC 4 cut(s) 514, 702, 1104, 1315
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 3 cut(s) 713, 783, 1254
BstYI RGATCY 3 cut(s) 713, 783, 1254
Bsu15I ATCGAT 1 cut(s) 1704
BsuRI GGCC 6 cut(s) 361, 421, 425, 514, 1236, 1411
BsuTUI ATCGAT 1 cut(s) 1704
BtsCI GGATG 5 cut(s) 255, 946, 1018, 1330, 1669
BtsI GCAGTG 1 cut(s) 556
BtsIMutI CAGTG 2 cut(s) 556, 671
BveI ACCTGC 1 cut(s) 735
Cac8I GCNNGC 2 cut(s) 423, 908
CaiI CAGNNNCTG 1 cut(s) 1698
CciI TCATGA 1 cut(s) 322
CfoI GCGC 2 cut(s) 1053, 1165
Cfr10I RCCGGY 2 cut(s) 421, 1464
Cfr13I GGNCC 3 cut(s) 419, 830, 1235
ClaI ATCGAT 1 cut(s) 1704
CseI GACGC 1 cut(s) 1123
Csp6I GTAC 3 cut(s) 205, 352, 1435
CspAI ACCGGT 1 cut(s) 1464
CviAII CATG 8 cut(s) 50, 323, 484, 533, 788, 1129, 1358, 1556
CviQI GTAC 3 cut(s) 205, 352, 1435
DdeI CTNAG 6 cut(s) 370, 759, 951, 1007, 1044, 1503
DraI TTTAAA 1 cut(s) 720
EaeI YGGCCR 1 cut(s) 512
Eam1104I CTCTTC 3 cut(s) 369, 636, 970
EarI CTCTTC 3 cut(s) 369, 636, 970
EciI GGCGGA 2 cut(s) 880, 997
Eco130I CCWWGG 2 cut(s) 281, 362
Eco31I GGTCTC 1 cut(s) 637
Eco47I GGWCC 1 cut(s) 830
Eco57I CTGAAG 3 cut(s) 959, 1062, 1595
EcoRI GAATTC 2 cut(s) 15, 308
EcoRII CCWGG 2 cut(s) 1231, 1248
EcoT14I CCWWGG 2 cut(s) 281, 362
EcoT22I ATGCAT 1 cut(s) 534
ErhI CCWWGG 2 cut(s) 281, 362
Esp3I CGTCTC 1 cut(s) 1047
FaeI CATG 8 cut(s) 53, 326, 487, 536, 791, 1132, 1361, 1559
FaqI GGGAC 4 cut(s) 311, 836, 1126, 1364
FatI CATG 8 cut(s) 49, 322, 483, 532, 787, 1128, 1357, 1555
FauI CCCGC 4 cut(s) 287, 813, 1324, 1513
FblI GTMKAC 1 cut(s) 1525
Fnu4HI GCNGC 7 cut(s) 503, 680, 691, 1118, 1200, 1203, 1329
FokI GGATG 5 cut(s) 262, 953, 1025, 1337, 1676
FseI GGCCGGCC 1 cut(s) 425
Fsp4HI GCNGC 7 cut(s) 503, 680, 691, 1118, 1200, 1203, 1329
FspBI CTAG 3 cut(s) 20, 473, 1121
GlaI GCGC 2 cut(s) 1052, 1164
GluI GCNGC 7 cut(s) 503, 680, 691, 1118, 1200, 1203, 1329
GsaI CCCAGC 3 cut(s) 397, 673, 1209
GsuI CTGGAG 3 cut(s) 102, 134, 800
HaeII RGCGCY 1 cut(s) 1166
HaeIII GGCC 6 cut(s) 361, 421, 425, 514, 1236, 1411
HapII CCGG 3 cut(s) 422, 1388, 1465
HgaI GACGC 1 cut(s) 1123
HhaI GCGC 2 cut(s) 1053, 1165
Hin1II CATG 8 cut(s) 53, 326, 487, 536, 791, 1132, 1361, 1559
Hin6I GCGC 2 cut(s) 1051, 1163
HinP1I GCGC 2 cut(s) 1051, 1163
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 1004
HinfI GANTC 9 cut(s) 187, 751, 882, 1036, 1132, 1318, 1354, 1369, 1453
HpaI GTTAAC 1 cut(s) 256
HpaII CCGG 3 cut(s) 422, 1388, 1465
HphI GGTGA 2 cut(s) 37, 721
Hpy166II GTNNAC 3 cut(s) 205, 256, 1526
Hpy188I TCNGA 9 cut(s) 192, 553, 637, 978, 1266, 1353, 1506, 1575, 1593
Hpy188III TCNNGA 6 cut(s) 81, 113, 323, 1322, 1381, 1535
Hpy8I GTNNAC 3 cut(s) 205, 256, 1526
HpyAV CCTTC 9 cut(s) 581, 594, 598, 983, 1465, 1509, 1570, 1575, 1624
HpyCH4III ACNGT 3 cut(s) 541, 666, 1541
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 6 cut(s) 532, 1128, 1172, 1425, 1627, 1692
HpyF10VI GCNNNNNNNGC 4 cut(s) 511, 1169, 1408, 1517
HpyF3I CTNAG 6 cut(s) 370, 759, 951, 1007, 1044, 1503
HpySE526I ACGT 1 cut(s) 431
Hsp92II CATG 8 cut(s) 53, 326, 487, 536, 791, 1132, 1361, 1559
HspAI GCGC 2 cut(s) 1051, 1163
KroI GCCGGC 1 cut(s) 421
KroNI GCCGGC 1 cut(s) 423
KspAI GTTAAC 1 cut(s) 256
LmnI GCTCC 2 cut(s) 819, 1234
Lsp1109I GCAGC 4 cut(s) 514, 702, 1104, 1315
LweI GCATC 5 cut(s) 142, 557, 931, 1315, 1654
MaeI CTAG 3 cut(s) 20, 473, 1121
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 3 cut(s) 776, 1103, 1177
MboII GAAGA 5 cut(s) 378, 386, 653, 785, 957
MfeI CAATTG 1 cut(s) 1055
MflI RGATCY 3 cut(s) 713, 783, 1254
MluCI AATT 9 cut(s) 15, 165, 308, 652, 1055, 1167, 1403, 1440, 1530
MlyI GAGTC 3 cut(s) 196, 876, 1348
MmeI TCCRAC 2 cut(s) 52, 170
Mph1103I ATGCAT 1 cut(s) 534
MroNI GCCGGC 1 cut(s) 421
MroXI GAANNNNTTC 2 cut(s) 378, 608
MseI TTAA 8 cut(s) 120, 168, 255, 719, 740, 878, 1224, 1614
MspA1I CMGCKG 2 cut(s) 397, 820
MspCI CTTAAG 1 cut(s) 1223
MspI CCGG 3 cut(s) 422, 1388, 1465
MspR9I CCNGG 3 cut(s) 1233, 1250, 1388
MunI CAATTG 1 cut(s) 1055
Mva1269I GAATGC 1 cut(s) 1513
MvaI CCWGG 2 cut(s) 1233, 1250
MwoI GCNNNNNNNGC 4 cut(s) 511, 1169, 1408, 1517
NaeI GCCGGC 1 cut(s) 423
NciI CCSGG 1 cut(s) 1388
NgoMIV GCCGGC 1 cut(s) 421
NlaIII CATG 8 cut(s) 53, 326, 487, 536, 791, 1132, 1361, 1559
NlaIV GGNNCC 5 cut(s) 785, 831, 905, 1230, 1237
NmeAIII GCCGAG 2 cut(s) 841, 1070
NmuCI GTSAC 1 cut(s) 1177
NsiI ATGCAT 1 cut(s) 534
PagI TCATGA 1 cut(s) 322
PaqCI CACCTGC 1 cut(s) 735
PctI GAATGC 1 cut(s) 1513
PdiI GCCGGC 1 cut(s) 423
PdmI GAANNNNTTC 2 cut(s) 378, 608
PfeI GAWTC 6 cut(s) 751, 1036, 1132, 1318, 1369, 1453
PflFI GACNNNGTC 1 cut(s) 479
PflMI CCANNNNNTGG 2 cut(s) 400, 1060
PinAI ACCGGT 1 cut(s) 1464
PkrI GCNGC 7 cut(s) 504, 681, 692, 1119, 1201, 1204, 1330
Ple19I CGATCG 2 cut(s) 914, 1708
PleI GAGTC 3 cut(s) 195, 876, 1348
PpsI GAGTC 3 cut(s) 195, 876, 1348
Ppu21I YACGTR 1 cut(s) 432
PshAI GACNNNNGTC 1 cut(s) 828
Psp6I CCWGG 2 cut(s) 1231, 1248
PspFI CCCAGC 3 cut(s) 393, 669, 1205
PspGI CCWGG 2 cut(s) 1231, 1248
PspN4I GGNNCC 5 cut(s) 785, 831, 905, 1230, 1237
PspPI GGNCC 3 cut(s) 419, 830, 1235
PstNI CAGNNNCTG 1 cut(s) 1698
PsuI RGATCY 3 cut(s) 713, 783, 1254
PsyI GACNNNGTC 1 cut(s) 479
PvuI CGATCG 2 cut(s) 914, 1708
PvuII CAGCTG 1 cut(s) 397
RigI GGCCGGCC 1 cut(s) 425
RsaI GTAC 3 cut(s) 206, 353, 1436
RsaNI GTAC 3 cut(s) 205, 352, 1435
SaqAI TTAA 8 cut(s) 120, 168, 255, 719, 740, 878, 1224, 1614
SatI GCNGC 7 cut(s) 503, 680, 691, 1118, 1200, 1203, 1329
Sau96I GGNCC 3 cut(s) 419, 830, 1235
SchI GAGTC 3 cut(s) 196, 876, 1348
ScrFI CCNGG 3 cut(s) 1233, 1250, 1388
SfaNI GCATC 5 cut(s) 142, 557, 931, 1315, 1654
SinI GGWCC 1 cut(s) 830
SmlI CTYRAG 1 cut(s) 1223
SmoI CTYRAG 1 cut(s) 1223
Sse9I AATT 9 cut(s) 15, 165, 308, 652, 1055, 1167, 1403, 1440, 1530
SspI AATATT 3 cut(s) 124, 145, 583
SspMI CTAG 3 cut(s) 20, 473, 1121
StyD4I CCNGG 3 cut(s) 1231, 1248, 1386
StyI CCWWGG 2 cut(s) 281, 362
TaaI ACNGT 3 cut(s) 541, 666, 1541
TaiI ACGT 1 cut(s) 434
TaqI TCGA 4 cut(s) 914, 1139, 1337, 1704
TasI AATT 9 cut(s) 15, 165, 308, 652, 1055, 1167, 1403, 1440, 1530
TatI WGTACW 1 cut(s) 351
TauI GCSGC 3 cut(s) 682, 1202, 1205
TfiI GAWTC 6 cut(s) 751, 1036, 1132, 1318, 1369, 1453
Tru1I TTAA 8 cut(s) 120, 168, 255, 719, 740, 878, 1224, 1614
Tru9I TTAA 8 cut(s) 120, 168, 255, 719, 740, 878, 1224, 1614
TscAI CASTG 2 cut(s) 563, 671
TseFI GTSAC 1 cut(s) 1177
TseI GCWGC 4 cut(s) 502, 690, 1117, 1328
Tsp45I GTSAC 1 cut(s) 1177
TspDTI ATGAA 7 cut(s) 17, 38, 176, 549, 1145, 1169, 1556
TspGWI ACGGA 4 cut(s) 222, 287, 1029, 1196
TspRI CASTG 2 cut(s) 563, 671
Tth111I GACNNNGTC 1 cut(s) 479
Van91I CCANNNNNTGG 2 cut(s) 400, 1060
Vha464I CTTAAG 1 cut(s) 1223
VpaK11BI GGWCC 1 cut(s) 830
XapI RAATTY 5 cut(s) 15, 308, 652, 1440, 1530
XmiI GTMKAC 1 cut(s) 1525
XmnI GAANNNNTTC 2 cut(s) 378, 608
XspI CTAG 3 cut(s) 20, 473, 1121
Zsp2I ATGCAT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.