Rmu_co8222072.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8222072.1
OG0000147
Physical Location & Seq
Forward (+)
155 .. 625
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8222072.1_g000001.1.cds

Sequence Viewer

Length: 471 bp
atggttatccatgaaccaagagtgggctccaatcactgccctctggtagtttatttgcacccacgtgtaaagaaaagccccaagatttttcgttttgaagcttcttgggcagatgatccggagtgtgaagaaatcgtcaacacatgttggaagaatgagacctcctctgaccccttcaaactttgggactctaacctaaaggcctgcaaaaggaacctgtccaagtggagcaaaaagaaatttccaaacaataaggcggttattgattccttgaattgggatattggctgcattcaagagggtgctgtgtcaacagattcaaaagcaagggagaaagagttgctcactgatcttgaggcagcctggaaacttgaggagtgttgttggaagcaaaggtcgagaattaactggctcatggaaggggatagaaacacaaaatttttccaccttactacgcttcacagacggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

156

Amino Acids

18.36

Weight (kDa)

8.84

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 1 cut(s) 257
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 2 cut(s) 239, 437
AcvI CACGTG 1 cut(s) 65
AfiI CCNNNNNNNGG 3 cut(s) 23, 210, 276
AflIII ACRYGT 2 cut(s) 64, 143
AgsI TTSAA 5 cut(s) 98, 178, 274, 296, 321
AjnI CCWGG 1 cut(s) 362
AleI CACNNNNGTG 1 cut(s) 63
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 1 cut(s) 110
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 2 cut(s) 288, 359
ApoI RAATTY 2 cut(s) 239, 437
BanII GRGCYC 1 cut(s) 29
BbrPI CACGTG 1 cut(s) 65
BbvI GCAGC 2 cut(s) 275, 371
BciT130I CCWGG 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 152
BisI GCNGC 2 cut(s) 289, 360
BlsI GCNGC 2 cut(s) 290, 361
Bme1390I CCNGG 1 cut(s) 364
BmiI GGNNCC 2 cut(s) 28, 215
BmrFI CCNGG 1 cut(s) 364
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BpuEI CTTGAG 2 cut(s) 374, 392
BsaAI YACGTR 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 152
BsaWI WCCGGW 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 210, 276
Bse1I ACTGG 1 cut(s) 413
BseAI TCCGGA 1 cut(s) 118
BseBI CCWGG 1 cut(s) 364
BseLI CCNNNNNNNGG 3 cut(s) 23, 210, 276
BseNI ACTGG 1 cut(s) 413
BseRI GAGGAG 2 cut(s) 154, 389
BseXI GCAGC 2 cut(s) 275, 371
BshFI GGCC 1 cut(s) 203
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 3 cut(s) 23, 210, 276
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 291
BsnI GGCC 1 cut(s) 203
Bso31I GGTCTC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 29
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 2 cut(s) 115, 349
BspACI CCGC 1 cut(s) 257
BspANI GGCC 1 cut(s) 203
BspEI TCCGGA 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 28, 215
BspPI GGATC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 152
BsrI ACTGG 1 cut(s) 413
BssMI GATC 2 cut(s) 115, 349
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 1 cut(s) 468
BstBAI YACGTR 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 205
BstENI CCTNNNNNAGG 1 cut(s) 208
BstKTI GATC 2 cut(s) 118, 352
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 2 cut(s) 115, 349
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNI CCWGG 1 cut(s) 364
BstNSI RCATGY 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 362
BstV1I GCAGC 2 cut(s) 275, 371
BsuRI GGCC 1 cut(s) 203
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 2 cut(s) 34, 345
Cac8I GCNNGC 1 cut(s) 205
CviAII CATG 3 cut(s) 11, 144, 415
CviJI RGCY 7 cut(s) 27, 78, 101, 203, 288, 362, 412
CviKI_1 RGCY 7 cut(s) 27, 78, 101, 203, 288, 362, 412
DpnI GATC 2 cut(s) 117, 351
DpnII GATC 2 cut(s) 115, 349
Eco147I AGGCCT 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 29
Eco31I GGTCTC 1 cut(s) 152
Eco72I CACGTG 1 cut(s) 65
EcoNI CCTNNNNNAGG 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 362
EcoT38I GRGCYC 1 cut(s) 29
FaeI CATG 3 cut(s) 14, 147, 418
FaiI YATR 3 cut(s) 12, 145, 416
FaqI GGGAC 1 cut(s) 200
FatI CATG 3 cut(s) 10, 143, 414
Fnu4HI GCNGC 2 cut(s) 289, 360
FriOI GRGCYC 1 cut(s) 29
Fsp4HI GCNGC 2 cut(s) 289, 360
GluI GCNGC 2 cut(s) 289, 360
HaeIII GGCC 1 cut(s) 203
HapII CCGG 1 cut(s) 119
Hin1II CATG 3 cut(s) 14, 147, 418
HincII GTYRAC 2 cut(s) 139, 312
HindII GTYRAC 2 cut(s) 139, 312
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 3 cut(s) 188, 266, 317
HpaII CCGG 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 139, 312
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 4 cut(s) 119, 296, 353, 399
Hpy8I GTNNAC 2 cut(s) 139, 312
HpyAV CCTTC 2 cut(s) 184, 413
HpyCH4III ACNGT 1 cut(s) 468
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 3 cut(s) 58, 207, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 3 cut(s) 14, 147, 418
Kpn2I TCCGGA 1 cut(s) 118
Kzo9I GATC 2 cut(s) 115, 349
LmnI GCTCC 2 cut(s) 32, 228
LpnPI CCDG 7 cut(s) 29, 132, 217, 230, 349, 376, 394
Lsp1109I GCAGC 2 cut(s) 275, 371
MaeII ACGT 1 cut(s) 64
MalI GATC 2 cut(s) 117, 351
MboI GATC 2 cut(s) 115, 349
MboII GAAGA 2 cut(s) 140, 163
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 4 cut(s) 239, 274, 402, 437
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 2 cut(s) 128, 365
MnlI CCTC 6 cut(s) 51, 172, 175, 292, 349, 367
MroI TCCGGA 1 cut(s) 118
MseI TTAA 1 cut(s) 405
MslI CAYNNNNRTG 1 cut(s) 63
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 364
Mva1269I GAATGC 1 cut(s) 291
MvaI CCWGG 1 cut(s) 364
MwoI GCNNNNNNNGC 1 cut(s) 107
NdeII GATC 2 cut(s) 115, 349
NlaIII CATG 3 cut(s) 14, 147, 418
NlaIV GGNNCC 2 cut(s) 28, 215
NspI RCATGY 1 cut(s) 147
OliI CACNNNNGTG 1 cut(s) 63
PceI AGGCCT 1 cut(s) 203
PciI ACATGT 1 cut(s) 143
PctI GAATGC 1 cut(s) 291
PfeI GAWTC 2 cut(s) 266, 317
PkrI GCNGC 2 cut(s) 290, 361
PleI GAGTC 1 cut(s) 182
PmaCI CACGTG 1 cut(s) 65
PmlI CACGTG 1 cut(s) 65
PpsI GAGTC 1 cut(s) 182
Ppu21I YACGTR 1 cut(s) 65
PscI ACATGT 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 362
PspCI CACGTG 1 cut(s) 65
PspGI CCWGG 1 cut(s) 362
PspN4I GGNNCC 2 cut(s) 28, 215
RseI CAYNNNNRTG 1 cut(s) 63
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 2 cut(s) 289, 360
Sau3AI GATC 2 cut(s) 115, 349
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 364
SduI GDGCHC 1 cut(s) 29
SetI ASST 7 cut(s) 67, 103, 164, 198, 219, 398, 450
SmiMI CAYNNNNRTG 1 cut(s) 63
SmlI CTYRAG 2 cut(s) 353, 371
SmoI CTYRAG 2 cut(s) 353, 371
Sse9I AATT 4 cut(s) 239, 274, 402, 437
SseBI AGGCCT 1 cut(s) 203
SsiI CCGC 1 cut(s) 257
StuI AGGCCT 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 362
TaaI ACNGT 1 cut(s) 468
TaiI ACGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 398
TasI AATT 4 cut(s) 239, 274, 402, 437
TfiI GAWTC 2 cut(s) 266, 317
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 2 cut(s) 41, 352
TseI GCWGC 2 cut(s) 288, 359
TspDTI ATGAA 1 cut(s) 27
TspRI CASTG 2 cut(s) 41, 352
XagI CCTNNNNNAGG 1 cut(s) 208
XapI RAATTY 2 cut(s) 239, 437
XceI RCATGY 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.