Rmu_sc0008279.1_g000017

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008279.1
OG0000147
Physical Location & Seq
Forward (+)
98213 .. 99295
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008279.1_g000017.1.cds

Sequence Viewer

Length: 1083 bp
atgggctacagtatgggctacacggtggatccaattaactccgctggaggtctttgcttatggtggaaatctgatttcaaggtggatgtgaccgatttttcacagttctttattgatactgatattactctcccgggctctactgacttgattagagtgacctggatgtatggccccccatatggaccatataaggtccaattctgggagtattggtgcagaaagggtaggttgaatgggattccctggcttgtgattggagatctgaatgagttagcttatcattttgagagagagggtggagcaccttggagaacaaatcgcaaacagcatcttaataatttcatctcggccaactcactctttgatattggctttaaggggcaaagtttcacgtgggctcgaaaggagaatgggatggttgctttacaagagcgattggataggagtttggtcagtgatagttggcttttgaaatggcctaactcttgtctaacccaccttgcacggatcgggtctgatcataacccaatctttctagacactaaccctttacaagccaaacaaaaaccctctttcaaatttgaagcttcgtgggcggatgaggcggattcttatcttatcataacggattgctggtataggactccttcccttcctaatattacacagtggatttcaaacctcaatcgctgcagatccaagctcaaggtttggagtaaaaacaaatttccaaagtgcaacaaagatgagattaaggcttgtttagttgagttggaggagctccaactaaactcacctttcaccagtacaaaacaacaagatgtactagccaatagactgggttctttgtggattaaggaagaaaagtattggcaccaacgctcacttgtgaattggctacaaacgggggattcaaattccagattcttccatctctctactcttcaacgaagacagagaaatcaaattctgaaaattcaaaatgagtctggtgcttgggttgtgggtgaagctcagattaggtgtgaatttgaaacacagttcaaacaaattttcaagagtgttggaccaaggcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

360

Amino Acids

42.06

Weight (kDa)

8.99

Isoelectric Point (pI)

32.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 876
AciI CCGC 3 cut(s) 42, 599, 608
AclWI GGATC 4 cut(s) 23, 36, 518, 693
AcoI YGGCCR 1 cut(s) 351
AcsI RAATTY 7 cut(s) 581, 728, 919, 969, 978, 1031, 1053
AcvI CACGTG 1 cut(s) 396
AfaI GTAC 2 cut(s) 811, 828
AfiI CCNNNNNNNGG 2 cut(s) 182, 205
AjnI CCWGG 2 cut(s) 161, 245
AluBI AGCT 5 cut(s) 278, 590, 706, 784, 1016
AluI AGCT 5 cut(s) 278, 590, 706, 784, 1016
Alw21I GWGCWC 2 cut(s) 307, 786
AlwI GGATC 4 cut(s) 23, 36, 518, 693
Ama87I CYCGRG 1 cut(s) 133
AoxI GGCC 3 cut(s) 172, 351, 479
ApeKI GCWGC 1 cut(s) 693
ApoI RAATTY 7 cut(s) 581, 728, 919, 969, 978, 1031, 1053
AspS9I GGNCC 4 cut(s) 173, 185, 196, 1070
AsuC2I CCSGG 2 cut(s) 134, 135
AsuHPI GGTGA 3 cut(s) 789, 796, 1022
AvaI CYCGRG 1 cut(s) 133
AvaII GGWCC 3 cut(s) 185, 196, 1070
BamHI GGATCC 1 cut(s) 28
BanI GGYRCC 1 cut(s) 876
BanII GRGCYC 3 cut(s) 140, 403, 786
BbrPI CACGTG 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 961
Bbv12I GWGCWC 2 cut(s) 307, 786
BbvI GCAGC 1 cut(s) 680
BccI CCATC 2 cut(s) 412, 942
BciT130I CCWGG 2 cut(s) 163, 247
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 2 cut(s) 134, 135
BfaI CTAG 2 cut(s) 539, 830
BfmI CTRYAG 2 cut(s) 7, 694
BglII AGATCT 1 cut(s) 262
BisI GCNGC 1 cut(s) 694
BlsI GCNGC 1 cut(s) 695
Bme1390I CCNGG 4 cut(s) 134, 135, 163, 247
Bme18I GGWCC 3 cut(s) 185, 196, 1070
BmeT110I CYCGRG 1 cut(s) 133
BmgT120I GGNCC 4 cut(s) 173, 185, 196, 1070
BmiI GGNNCC 3 cut(s) 30, 175, 878
BmrFI CCNGG 4 cut(s) 134, 135, 163, 247
BmrI ACTGGG 1 cut(s) 851
BmsI GCATC 1 cut(s) 340
BmuI ACTGGG 1 cut(s) 851
BpiI GAAGAC 1 cut(s) 961
BpmI CTGGAG 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 692
BpuMI CCSGG 2 cut(s) 134, 135
BsaAI YACGTR 1 cut(s) 396
BsaBI GATNNNNATC 1 cut(s) 615
BsaJI CCNNGG 4 cut(s) 133, 245, 308, 1073
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 205
Bse1I ACTGG 2 cut(s) 807, 846
Bse8I GATNNNNATC 1 cut(s) 615
BseBI CCWGG 2 cut(s) 163, 247
BseDI CCNNGG 4 cut(s) 133, 245, 308, 1073
BseGI GGATG 4 cut(s) 91, 171, 423, 607
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 2 cut(s) 182, 205
BseMII CTCAG 1 cut(s) 1031
BseNI ACTGG 2 cut(s) 807, 846
BseRI GAGGAG 1 cut(s) 794
BseXI GCAGC 1 cut(s) 680
BsgI GTGCAG 1 cut(s) 238
BshFI GGCC 3 cut(s) 174, 353, 481
BshNI GGYRCC 1 cut(s) 876
BsiHKAI GWGCWC 2 cut(s) 307, 786
BsiHKCI CYCGRG 1 cut(s) 133
BsiSI CCGG 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 182, 205
BsnI GGCC 3 cut(s) 174, 353, 481
BsoBI CYCGRG 1 cut(s) 133
Bsp1286I GDGCHC 4 cut(s) 140, 307, 403, 786
Bsp143I GATC 5 cut(s) 28, 262, 510, 520, 698
BspACI CCGC 3 cut(s) 42, 599, 608
BspANI GGCC 3 cut(s) 174, 353, 481
BspCNI CTCAG 1 cut(s) 1030
BspLI GGNNCC 3 cut(s) 30, 175, 878
BspMAI CTGCAG 1 cut(s) 698
BspPI GGATC 4 cut(s) 23, 36, 518, 693
BspT107I GGYRCC 1 cut(s) 876
BsrI ACTGG 2 cut(s) 807, 846
BssECI CCNNGG 4 cut(s) 133, 245, 308, 1073
BssMI GATC 5 cut(s) 28, 262, 510, 520, 698
BssT1I CCWWGG 2 cut(s) 308, 1073
Bst2UI CCWGG 2 cut(s) 163, 247
Bst4CI ACNGT 5 cut(s) 11, 25, 105, 672, 1044
Bst6I CTCTTC 1 cut(s) 951
BstBAI YACGTR 1 cut(s) 396
BstDEI CTNAG 1 cut(s) 1017
BstF5I GGATG 4 cut(s) 91, 171, 423, 607
BstKTI GATC 5 cut(s) 31, 265, 513, 523, 701
BstMBI GATC 5 cut(s) 28, 262, 510, 520, 698
BstMWI GCNNNNNNNGC 2 cut(s) 596, 605
BstNI CCWGG 2 cut(s) 163, 247
BstSCI CCNGG 4 cut(s) 132, 133, 161, 245
BstSFI CTRYAG 2 cut(s) 7, 694
BstV1I GCAGC 1 cut(s) 680
BstV2I GAAGAC 1 cut(s) 961
BstX2I RGATCY 3 cut(s) 28, 262, 698
BstXI CCANNNNNNTGG 1 cut(s) 841
BstYI RGATCY 3 cut(s) 28, 262, 698
BsuRI GGCC 3 cut(s) 174, 353, 481
BtsCI GGATG 4 cut(s) 91, 171, 423, 607
BtsIMutI CAGTG 2 cut(s) 463, 677
Cfr13I GGNCC 4 cut(s) 173, 185, 196, 1070
Cfr9I CCCGGG 1 cut(s) 133
Csp6I GTAC 2 cut(s) 810, 827
CviQI GTAC 2 cut(s) 810, 827
DdeI CTNAG 1 cut(s) 1017
DpnI GATC 5 cut(s) 30, 264, 512, 522, 700
DpnII GATC 5 cut(s) 28, 262, 510, 520, 698
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 951
EarI CTCTTC 1 cut(s) 951
EciI GGCGGA 2 cut(s) 614, 623
Ecl136II GAGCTC 1 cut(s) 784
Eco130I CCWWGG 2 cut(s) 308, 1073
Eco24I GRGCYC 3 cut(s) 140, 403, 786
Eco47I GGWCC 3 cut(s) 185, 196, 1070
Eco53kI GAGCTC 1 cut(s) 784
Eco72I CACGTG 1 cut(s) 396
Eco88I CYCGRG 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 784
EcoRII CCWGG 2 cut(s) 161, 245
EcoT14I CCWWGG 2 cut(s) 308, 1073
EcoT38I GRGCYC 3 cut(s) 140, 403, 786
ErhI CCWWGG 2 cut(s) 308, 1073
FauNDI CATATG 1 cut(s) 181
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 1 cut(s) 694
FokI GGATG 4 cut(s) 98, 178, 430, 614
FriOI GRGCYC 3 cut(s) 140, 403, 786
Fsp4HI GCNGC 1 cut(s) 694
FspBI CTAG 2 cut(s) 539, 830
GluI GCNGC 1 cut(s) 694
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 3 cut(s) 174, 353, 481
HapII CCGG 1 cut(s) 134
HindIII AAGCTT 1 cut(s) 588
HinfI GANTC 6 cut(s) 241, 611, 646, 914, 927, 989
HpaII CCGG 1 cut(s) 134
HphI GGTGA 3 cut(s) 789, 796, 1022
Hpy188I TCNGA 5 cut(s) 73, 267, 520, 975, 1020
Hpy188III TCNNGA 3 cut(s) 539, 924, 1060
HpyAV CCTTC 2 cut(s) 660, 665
HpyCH4III ACNGT 5 cut(s) 11, 25, 105, 672, 1044
HpyCH4IV ACGT 1 cut(s) 395
HpyCH4V TGCA 4 cut(s) 219, 506, 696, 741
HpyF10VI GCNNNNNNNGC 2 cut(s) 596, 605
HpyF3I CTNAG 1 cut(s) 1017
HpySE526I ACGT 1 cut(s) 395
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 5 cut(s) 28, 262, 510, 520, 698
LmnI GCTCC 3 cut(s) 302, 781, 789
Lsp1109I GCAGC 1 cut(s) 680
LweI GCATC 1 cut(s) 340
MaeI CTAG 2 cut(s) 539, 830
MaeII ACGT 1 cut(s) 395
MaeIII GTNAC 2 cut(s) 88, 157
MalI GATC 5 cut(s) 30, 264, 512, 522, 700
MboI GATC 5 cut(s) 28, 262, 510, 520, 698
MboII GAAGA 4 cut(s) 875, 922, 938, 966
MflI RGATCY 3 cut(s) 28, 262, 698
MhlI GDGCHC 4 cut(s) 140, 307, 403, 786
MlyI GAGTC 2 cut(s) 640, 998
MmeI TCCRAC 3 cut(s) 756, 811, 1048
MnlI CCTC 6 cut(s) 41, 289, 583, 598, 695, 772
MseI TTAA 5 cut(s) 36, 336, 378, 756, 858
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 4 cut(s) 134, 135, 163, 247
MvaI CCWGG 2 cut(s) 163, 247
MwoI GCNNNNNNNGC 2 cut(s) 596, 605
NciI CCSGG 2 cut(s) 134, 135
NdeI CATATG 1 cut(s) 181
NdeII GATC 5 cut(s) 28, 262, 510, 520, 698
NlaIV GGNNCC 3 cut(s) 30, 175, 878
NmeAIII GCCGAG 1 cut(s) 329
NmuCI GTSAC 2 cut(s) 88, 157
PfeI GAWTC 4 cut(s) 241, 611, 914, 927
PkrI GCNGC 1 cut(s) 695
PleI GAGTC 2 cut(s) 640, 997
PmaCI CACGTG 1 cut(s) 396
PmlI CACGTG 1 cut(s) 396
PpsI GAGTC 2 cut(s) 640, 997
Ppu21I YACGTR 1 cut(s) 396
Psp124BI GAGCTC 1 cut(s) 786
Psp6I CCWGG 2 cut(s) 161, 245
PspCI CACGTG 1 cut(s) 396
PspGI CCWGG 2 cut(s) 161, 245
PspN4I GGNNCC 3 cut(s) 30, 175, 878
PspPI GGNCC 4 cut(s) 173, 185, 196, 1070
PstI CTGCAG 1 cut(s) 698
PsuI RGATCY 3 cut(s) 28, 262, 698
RsaI GTAC 2 cut(s) 811, 828
RsaNI GTAC 2 cut(s) 810, 827
SacI GAGCTC 1 cut(s) 786
SaqAI TTAA 5 cut(s) 36, 336, 378, 756, 858
SatI GCNGC 1 cut(s) 694
Sau3AI GATC 5 cut(s) 28, 262, 510, 520, 698
Sau96I GGNCC 4 cut(s) 173, 185, 196, 1070
SchI GAGTC 2 cut(s) 640, 998
ScrFI CCNGG 4 cut(s) 134, 135, 163, 247
SduI GDGCHC 4 cut(s) 140, 307, 403, 786
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 2 cut(s) 7, 694
SinI GGWCC 3 cut(s) 185, 196, 1070
SmaI CCCGGG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 707
SmoI CTYRAG 1 cut(s) 707
SsiI CCGC 3 cut(s) 42, 599, 608
SspI AATATT 1 cut(s) 664
SspMI CTAG 2 cut(s) 539, 830
SstI GAGCTC 1 cut(s) 786
StyD4I CCNGG 4 cut(s) 132, 133, 161, 245
StyI CCWWGG 2 cut(s) 308, 1073
TaaI ACNGT 5 cut(s) 11, 25, 105, 672, 1044
TaiI ACGT 1 cut(s) 398
TaqI TCGA 1 cut(s) 403
TaqII GACCGA 1 cut(s) 107
TatI WGTACW 2 cut(s) 809, 826
TfiI GAWTC 4 cut(s) 241, 611, 914, 927
Tru1I TTAA 5 cut(s) 36, 336, 378, 756, 858
Tru9I TTAA 5 cut(s) 36, 336, 378, 756, 858
TscAI CASTG 2 cut(s) 463, 677
TseFI GTSAC 2 cut(s) 88, 157
TseI GCWGC 1 cut(s) 693
Tsp45I GTSAC 2 cut(s) 88, 157
TspDTI ATGAA 1 cut(s) 334
TspGWI ACGGA 2 cut(s) 523, 644
TspMI CCCGGG 1 cut(s) 133
TspRI CASTG 2 cut(s) 463, 677
VpaK11BI GGWCC 3 cut(s) 185, 196, 1070
XapI RAATTY 7 cut(s) 581, 728, 919, 969, 978, 1031, 1053
XbaI TCTAGA 1 cut(s) 538
XmaI CCCGGG 1 cut(s) 133
XspI CTAG 2 cut(s) 539, 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.