ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 482 |
| AciI | CCGC | 1 cut(s) | 486 |
| AclI | AACGTT | 1 cut(s) | 432 |
| AclWI | GGATC | 2 cut(s) | 416, 524 |
| AcsI | RAATTY | 1 cut(s) | 214 |
| AfaI | GTAC | 1 cut(s) | 290 |
| AfeI | AGCGCT | 1 cut(s) | 323 |
| AgsI | TTSAA | 2 cut(s) | 146, 214 |
| AluBI | AGCT | 1 cut(s) | 65 |
| AluI | AGCT | 1 cut(s) | 65 |
| AlwI | GGATC | 2 cut(s) | 416, 524 |
| Aor51HI | AGCGCT | 1 cut(s) | 323 |
| AoxI | GGCC | 1 cut(s) | 49 |
| ApeKI | GCWGC | 1 cut(s) | 65 |
| ApoI | RAATTY | 1 cut(s) | 214 |
| AspLEI | GCGC | 1 cut(s) | 324 |
| AsuHPI | GGTGA | 2 cut(s) | 197, 256 |
| BanI | GGYRCC | 1 cut(s) | 482 |
| BbsI | GAAGAC | 2 cut(s) | 12, 153 |
| BbvI | GCAGC | 1 cut(s) | 52 |
| BfaI | CTAG | 1 cut(s) | 531 |
| BfoI | RGCGCY | 1 cut(s) | 325 |
| BisI | GCNGC | 1 cut(s) | 66 |
| BlsI | GCNGC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 2 cut(s) | 341, 484 |
| BmsI | GCATC | 1 cut(s) | 511 |
| BpiI | GAAGAC | 2 cut(s) | 12, 153 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 451, 483 |
| BpmI | CTGGAG | 1 cut(s) | 498 |
| BsaAI | YACGTR | 1 cut(s) | 377 |
| BsaJI | CCNNGG | 1 cut(s) | 72 |
| Bse1I | ACTGG | 1 cut(s) | 341 |
| BseDI | CCNNGG | 1 cut(s) | 72 |
| BseGI | GGATG | 1 cut(s) | 170 |
| BseMII | CTCAG | 1 cut(s) | 83 |
| BseNI | ACTGG | 1 cut(s) | 341 |
| BseXI | GCAGC | 1 cut(s) | 52 |
| BshFI | GGCC | 1 cut(s) | 51 |
| BshNI | GGYRCC | 1 cut(s) | 482 |
| BsnI | GGCC | 1 cut(s) | 51 |
| Bsp143I | GATC | 2 cut(s) | 408, 516 |
| BspACI | CCGC | 1 cut(s) | 486 |
| BspANI | GGCC | 1 cut(s) | 51 |
| BspCNI | CTCAG | 1 cut(s) | 84 |
| BspLI | GGNNCC | 2 cut(s) | 341, 484 |
| BspPI | GGATC | 2 cut(s) | 416, 524 |
| BspT107I | GGYRCC | 1 cut(s) | 482 |
| BsrI | ACTGG | 1 cut(s) | 341 |
| BssECI | CCNNGG | 1 cut(s) | 72 |
| BssMI | GATC | 2 cut(s) | 408, 516 |
| BstBAI | YACGTR | 1 cut(s) | 377 |
| BstDEI | CTNAG | 1 cut(s) | 92 |
| BstF5I | GGATG | 1 cut(s) | 170 |
| BstH2I | RGCGCY | 1 cut(s) | 325 |
| BstHHI | GCGC | 1 cut(s) | 324 |
| BstKTI | GATC | 2 cut(s) | 411, 519 |
| BstMBI | GATC | 2 cut(s) | 408, 516 |
| BstV1I | GCAGC | 1 cut(s) | 52 |
| BstV2I | GAAGAC | 2 cut(s) | 12, 153 |
| BstX2I | RGATCY | 2 cut(s) | 408, 516 |
| BstYI | RGATCY | 2 cut(s) | 408, 516 |
| BsuRI | GGCC | 1 cut(s) | 51 |
| BtsCI | GGATG | 1 cut(s) | 170 |
| BtsIMutI | CAGTG | 1 cut(s) | 334 |
| CfoI | GCGC | 1 cut(s) | 324 |
| Csp6I | GTAC | 1 cut(s) | 289 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 163, 198 |
| CviAII | CATG | 1 cut(s) | 110 |
| CviJI | RGCY | 4 cut(s) | 32, 51, 65, 91 |
| CviKI_1 | RGCY | 4 cut(s) | 32, 51, 65, 91 |
| CviQI | GTAC | 1 cut(s) | 289 |
| DdeI | CTNAG | 1 cut(s) | 92 |
| DpnI | GATC | 2 cut(s) | 410, 518 |
| DpnII | GATC | 2 cut(s) | 408, 516 |
| DraI | TTTAAA | 1 cut(s) | 523 |
| Eco47III | AGCGCT | 1 cut(s) | 323 |
| FaeI | CATG | 1 cut(s) | 113 |
| FaiI | YATR | 4 cut(s) | 111, 252, 354, 422 |
| FatI | CATG | 1 cut(s) | 109 |
| Fnu4HI | GCNGC | 1 cut(s) | 66 |
| FokI | GGATG | 1 cut(s) | 177 |
| Fsp4HI | GCNGC | 1 cut(s) | 66 |
| FspBI | CTAG | 1 cut(s) | 531 |
| GlaI | GCGC | 1 cut(s) | 323 |
| GluI | GCNGC | 1 cut(s) | 66 |
| GsuI | CTGGAG | 1 cut(s) | 498 |
| HaeII | RGCGCY | 1 cut(s) | 325 |
| HaeIII | GGCC | 1 cut(s) | 51 |
| HhaI | GCGC | 1 cut(s) | 324 |
| Hin1II | CATG | 1 cut(s) | 113 |
| Hin6I | GCGC | 1 cut(s) | 322 |
| HinP1I | GCGC | 1 cut(s) | 322 |
| HinfI | GANTC | 1 cut(s) | 473 |
| HphI | GGTGA | 2 cut(s) | 197, 256 |
| Hpy188I | TCNGA | 1 cut(s) | 164 |
| Hpy188III | TCNNGA | 5 cut(s) | 104, 457, 470, 477, 539 |
| HpyCH4IV | ACGT | 2 cut(s) | 376, 432 |
| HpyCH4V | TGCA | 3 cut(s) | 234, 356, 502 |
| HpyF3I | CTNAG | 1 cut(s) | 92 |
| HpySE526I | ACGT | 2 cut(s) | 376, 432 |
| Hsp92II | CATG | 1 cut(s) | 113 |
| HspAI | GCGC | 1 cut(s) | 322 |
| Kzo9I | GATC | 2 cut(s) | 408, 516 |
| LpnPI | CCDG | 5 cut(s) | 117, 244, 322, 455, 462 |
| Lsp1109I | GCAGC | 1 cut(s) | 52 |
| LweI | GCATC | 1 cut(s) | 511 |
| MaeI | CTAG | 1 cut(s) | 531 |
| MaeII | ACGT | 2 cut(s) | 376, 432 |
| MaeIII | GTNAC | 2 cut(s) | 244, 428 |
| MalI | GATC | 2 cut(s) | 410, 518 |
| MboI | GATC | 2 cut(s) | 408, 516 |
| MboII | GAAGA | 4 cut(s) | 17, 92, 158, 392 |
| MflI | RGATCY | 2 cut(s) | 408, 516 |
| MluCI | AATT | 2 cut(s) | 188, 214 |
| MlyI | GAGTC | 1 cut(s) | 467 |
| MnlI | CCTC | 5 cut(s) | 67, 252, 258, 473, 505 |
| MseI | TTAA | 4 cut(s) | 219, 309, 450, 522 |
| NdeII | GATC | 2 cut(s) | 408, 516 |
| NlaIII | CATG | 1 cut(s) | 113 |
| NlaIV | GGNNCC | 2 cut(s) | 341, 484 |
| NmuCI | GTSAC | 1 cut(s) | 244 |
| PkrI | GCNGC | 1 cut(s) | 67 |
| PleI | GAGTC | 1 cut(s) | 467 |
| PpsI | GAGTC | 1 cut(s) | 467 |
| Ppu21I | YACGTR | 1 cut(s) | 377 |
| Psp1406I | AACGTT | 1 cut(s) | 432 |
| PspN4I | GGNNCC | 2 cut(s) | 341, 484 |
| PsuI | RGATCY | 2 cut(s) | 408, 516 |
| RsaI | GTAC | 1 cut(s) | 290 |
| RsaNI | GTAC | 1 cut(s) | 289 |
| SaqAI | TTAA | 4 cut(s) | 219, 309, 450, 522 |
| SatI | GCNGC | 1 cut(s) | 66 |
| Sau3AI | GATC | 2 cut(s) | 408, 516 |
| SchI | GAGTC | 1 cut(s) | 467 |
| SetI | ASST | 9 cut(s) | 67, 153, 263, 269, 290, 345, 379, 435, 497 |
| SfaNI | GCATC | 1 cut(s) | 511 |
| Sse9I | AATT | 2 cut(s) | 188, 214 |
| SsiI | CCGC | 1 cut(s) | 486 |
| SspMI | CTAG | 1 cut(s) | 531 |
| TaiI | ACGT | 2 cut(s) | 379, 435 |
| TaqI | TCGA | 1 cut(s) | 538 |
| TasI | AATT | 2 cut(s) | 188, 214 |
| Tru1I | TTAA | 4 cut(s) | 219, 309, 450, 522 |
| Tru9I | TTAA | 4 cut(s) | 219, 309, 450, 522 |
| TscAI | CASTG | 1 cut(s) | 341 |
| TseFI | GTSAC | 1 cut(s) | 244 |
| TseI | GCWGC | 1 cut(s) | 65 |
| Tsp45I | GTSAC | 1 cut(s) | 244 |
| TspDTI | ATGAA | 2 cut(s) | 287, 317 |
| TspGWI | ACGGA | 1 cut(s) | 195 |
| TspRI | CASTG | 1 cut(s) | 341 |
| XapI | RAATTY | 1 cut(s) | 214 |
| XspI | CTAG | 1 cut(s) | 531 |