FvH4_7g03341

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000147
Physical Location & Seq
Reverse (-)
3683208 .. 3686407
3200 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03341.t1

Sequence Viewer

Length: 1725 bp
ATGAAATTGATTTACTTGGAACCGGGAGTAGGTGGAGTTAAAGCTACCCTTCTGGGTTTGTGGAAGGCTCTGGGCCAGATCCGAATAGTTAGAGTCAAGAAGAATGATTATGTGGTAACAGTGGGTTCAGAACAGTTGGCTGGAAAGTTGCTAGAGGATAGTCCCTGGAATGTGAAGGGGTATTGCTTTTCGGTGAGGCACTGGCCTAAATTAGGCCATATGAGCATAGCCTGCAATTATCGTGTCAACCCGGCACTTCGAGAATTGGGTATTTCCAATGATCAATCCCTAGTTGCAGAAGCTCCACAAAAACCAGCCTATACACAGGGCCTTTTCCCACTGGAGTTTCCTTATGCTCCGGCAACCAGAATTTTTCACCGGAGTAGGAAGCAACATGGAGCTATGGTGAATTCAAATTCTGGGGAAGCAAGGCAGGGCGATGGTGACCGGTCTCTGCATGCAGCTGGTCTACTAGTATTGGGAGAACAAGGGGGAGAGGTAGAGGTGGCAGATCTGGTCATGGAAGAGGAAGCAAAGGGAAGAGGGTCGATGGAGAATTACCTCTTCTCTGAGGGTAGGGGACTGCACTTGGTGATGTTGCAAGTGATCAATGAATTGTCTGCTGTGGAACTGTCAAGGTTTGGGAAGTTACCCAGCCAAGAAGAGAAGGAAGGCGGTGTGGCTTGGTCTATTGGACGAGGTCGTATTCTCAGTAATTTCATCAACTCTAATAATCTGTTGGATATTGGTTTCAAGGGTCAGAATTTTACTTGGGGGAGAAGGGAAGGGGGAAAAGTTGTACTGCAAGAAAGGATTGACAAGGGTCTGATTAGTGACGATTGGATCTTTTACTGGCCAGAAACTACAATTACTCATTTGACTCTATTGGGGTTAGATCATACCCCTCTCTGGCTACAAATTGATCTGATTTTGAAGAACGATAGGAGGGGTCTCTGGGTGGATGGAGAGAGCAGAATTAGAAGGGAGTTTGAAGCTCAATTCAACGATGTTTTTACTAGCGGTGGACCTCGTGATTGGGGACAAGTGTTTATGGGGGTCAGCCCTATTGTTTCTGAGGATATGAACTCATTTCTATTGACTCCGGTTACTCTTGCGAAGGTAAAGGAAGCTTCTAATCAGTTAGTGGCTTTGAAGGCACCAGGACCGGATGGATTTCCTGGTCTTTTCTATCAAAAGTATTGGAATATTGTGAAGTCGATTATCATGGGTACGGCAACAGATTTCTTGGATGGAAGAGTGAATTTACAGAACTTGAATAGGACTCATATTGTCATTATCCCTAAGGTTCCTTACCCAGAAACTACTTCCGAATTCCTGCCGATAAGTTTATGCAACAATTCGTACAAAATCCTATTGAAGTTGCTTGCAAACATATTAAAGGTTTGTTTGCCGGACTTAATATCTCCCAATCAGAATGCTTTTTTCCCTAACCGGCTTATCCAAGACAATATTCTTTTGGTTCACGAGGCGTATCACTACCTCAAGTTGAAAAGAGATAGGGGAAATAATGAATTGGCTCTCAAGTTGGATATGAAGGCCTATGACCAGGTGGAGTGGGATTTTCTTGAGACTGCTCTCCTAAGATTTGGCTTTGCAAGAGAATGGGTTACTTTGATCATGGCTTGCGTCATGTCGGTCACTTTCTCTATTGTCCTAAATAGGAAACCTGGGAATTTCTTCCAGCCTAGTAGGGATTTGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

575

Amino Acids

64.7

Weight (kDa)

8.39

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 442 - 552 5.7e-09 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1156
AccI GTMKAC 1 cut(s) 469
AciI CCGC 2 cut(s) 675, 1020
AclWI GGATC 2 cut(s) 73, 851
AcoI YGGCCR 1 cut(s) 854
AcsI RAATTY 7 cut(s) 369, 409, 415, 763, 1261, 1331, 1693
AdeI CACNNNGTG 1 cut(s) 592
AfaI GTAC 3 cut(s) 801, 1231, 1364
AfiI CCNNNNNNNGG 3 cut(s) 29, 212, 909
AgeI ACCGGT 1 cut(s) 447
AgsI TTSAA 9 cut(s) 414, 754, 934, 992, 1003, 1153, 1276, 1378, 1510
AhlI ACTAGT 1 cut(s) 472
AjnI CCWGG 5 cut(s) 164, 1159, 1177, 1566, 1687
AjuI GAANNNNNNNTTGG 2 cut(s) 1455, 1487
AluBI AGCT 6 cut(s) 44, 302, 401, 464, 995, 1130
AluI AGCT 6 cut(s) 44, 302, 401, 464, 995, 1130
Alw26I GTCTC 3 cut(s) 456, 956, 1583
AlwI GGATC 2 cut(s) 73, 851
AoxI GGCC 6 cut(s) 73, 203, 214, 328, 854, 1557
ApeKI GCWGC 1 cut(s) 461
ApoI RAATTY 7 cut(s) 369, 409, 415, 763, 1261, 1331, 1693
AsiGI ACCGGT 1 cut(s) 447
Asp700I GAANNNNTTC 1 cut(s) 1697
AspS9I GGNCC 4 cut(s) 73, 328, 1025, 1163
AsuC2I CCSGG 2 cut(s) 24, 251
AsuHPI GGTGA 5 cut(s) 205, 368, 418, 455, 604
AvaII GGWCC 2 cut(s) 1025, 1163
AxyI CCTNAGG 1 cut(s) 1302
BalI TGGCCA 1 cut(s) 856
BanI GGYRCC 1 cut(s) 1156
BauI CACGAG 2 cut(s) 1029, 1484
BbvI GCAGC 1 cut(s) 473
BccI CCATC 5 cut(s) 434, 544, 956, 1163, 1244
BceAI ACGGC 1 cut(s) 1248
BciT130I CCWGG 5 cut(s) 166, 1161, 1179, 1568, 1689
BclI TGATCA 3 cut(s) 280, 606, 1635
BcnI CCSGG 2 cut(s) 24, 251
BcoDI GTCTC 3 cut(s) 456, 956, 1583
BcuI ACTAGT 1 cut(s) 472
BfaI CTAG 5 cut(s) 152, 290, 473, 1017, 1707
BglII AGATCT 1 cut(s) 511
BisI GCNGC 1 cut(s) 462
BlsI GCNGC 1 cut(s) 463
Bme1390I CCNGG 7 cut(s) 24, 166, 251, 1161, 1179, 1568, 1689
Bme18I GGWCC 2 cut(s) 1025, 1163
BmgT120I GGNCC 4 cut(s) 73, 328, 1025, 1163
BmiI GGNNCC 3 cut(s) 21, 1158, 1308
BmrFI CCNGG 7 cut(s) 24, 166, 251, 1161, 1179, 1568, 1689
BoxI GACNNNNGTC 1 cut(s) 822
BpmI CTGGAG 1 cut(s) 362
BpuEI CTTGAG 3 cut(s) 1487, 1526, 1607
BpuMI CCSGG 2 cut(s) 24, 251
BsaI GGTCTC 2 cut(s) 456, 956
BsaJI CCNNGG 2 cut(s) 164, 1688
BsaWI WCCGGW 4 cut(s) 378, 447, 1102, 1165
BsaXI ACNNNNNCTCC 2 cut(s) 390, 420
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 212, 909
Bse118I RCCGGY 2 cut(s) 447, 1452
Bse1I ACTGG 3 cut(s) 206, 345, 857
Bse21I CCTNAGG 1 cut(s) 1302
BseBI CCWGG 5 cut(s) 166, 1161, 1179, 1568, 1689
BseDI CCNNGG 2 cut(s) 164, 1688
BseGI GGATG 3 cut(s) 967, 1174, 1255
BseLI CCNNNNNNNGG 3 cut(s) 29, 212, 909
BseMII CTCAG 3 cut(s) 561, 724, 1065
BseNI ACTGG 3 cut(s) 206, 345, 857
BseXI GCAGC 1 cut(s) 473
BseYI CCCAGC 1 cut(s) 653
BsgI GTGCAG 1 cut(s) 569
BshFI GGCC 6 cut(s) 75, 205, 216, 330, 856, 1559
BshNI GGYRCC 1 cut(s) 1156
BshTI ACCGGT 1 cut(s) 447
BsiSI CCGG 9 cut(s) 23, 251, 359, 379, 448, 1103, 1166, 1412, 1453
BslFI GGGAC 3 cut(s) 147, 594, 1053
BslI CCNNNNNNNGG 3 cut(s) 29, 212, 909
BsmAI GTCTC 3 cut(s) 456, 956, 1583
BsmFI GGGAC 3 cut(s) 147, 594, 1053
BsmI GAATGC 1 cut(s) 1441
BsnI GGCC 6 cut(s) 75, 205, 216, 330, 856, 1559
Bso31I GGTCTC 2 cut(s) 456, 956
Bsp143I GATC 8 cut(s) 78, 280, 511, 606, 843, 895, 922, 1635
BspACI CCGC 2 cut(s) 675, 1020
BspANI GGCC 6 cut(s) 75, 205, 216, 330, 856, 1559
BspCNI CTCAG 3 cut(s) 562, 723, 1066
BspLI GGNNCC 3 cut(s) 21, 1158, 1308
BspPI GGATC 2 cut(s) 73, 851
BspT107I GGYRCC 1 cut(s) 1156
BspTNI GGTCTC 2 cut(s) 456, 956
BsrFI RCCGGY 2 cut(s) 447, 1452
BsrI ACTGG 3 cut(s) 206, 345, 857
BssAI RCCGGY 2 cut(s) 447, 1452
BssECI CCNNGG 2 cut(s) 164, 1688
BssMI GATC 8 cut(s) 78, 280, 511, 606, 843, 895, 922, 1635
BssSI CACGAG 2 cut(s) 1029, 1484
Bst2BI CACGAG 2 cut(s) 1029, 1484
Bst2UI CCWGG 5 cut(s) 166, 1161, 1179, 1568, 1689
Bst4CI ACNGT 3 cut(s) 121, 135, 633
Bst6I CTCTTC 5 cut(s) 519, 535, 569, 657, 1249
BstAPI GCANNNNNTGC 1 cut(s) 231
BstC8I GCNNGC 4 cut(s) 232, 459, 1386, 1645
BstDEI CTNAG 5 cut(s) 570, 710, 1074, 1302, 1601
BstEII GGTNACC 1 cut(s) 443
BstENI CCTNNNNNAGG 1 cut(s) 210
BstF5I GGATG 3 cut(s) 967, 1174, 1255
BstKTI GATC 8 cut(s) 81, 283, 514, 609, 846, 898, 925, 1638
BstMAI GTCTC 3 cut(s) 456, 956, 1583
BstMBI GATC 8 cut(s) 78, 280, 511, 606, 843, 895, 922, 1635
BstMWI GCNNNNNNNGC 3 cut(s) 222, 231, 1154
BstNI CCWGG 5 cut(s) 166, 1161, 1179, 1568, 1689
BstNSI RCATGY 1 cut(s) 461
BstPAI GACNNNNGTC 1 cut(s) 822
BstPI GGTNACC 1 cut(s) 443
BstSCI CCNGG 7 cut(s) 22, 164, 249, 1159, 1177, 1566, 1687
BstV1I GCAGC 1 cut(s) 473
BstX2I RGATCY 3 cut(s) 78, 511, 843
BstYI RGATCY 3 cut(s) 78, 511, 843
Bsu36I CCTNAGG 1 cut(s) 1302
BsuRI GGCC 6 cut(s) 75, 205, 216, 330, 856, 1559
BtgZI GCGATG 1 cut(s) 453
BtsCI GGATG 3 cut(s) 967, 1174, 1255
BtsIMutI CAGTG 3 cut(s) 126, 199, 338
Cac8I GCNNGC 4 cut(s) 232, 459, 1386, 1645
Cfr10I RCCGGY 2 cut(s) 447, 1452
Cfr13I GGNCC 4 cut(s) 73, 328, 1025, 1163
CseI GACGC 1 cut(s) 1636
CsiI ACCWGGT 1 cut(s) 1566
Csp6I GTAC 3 cut(s) 800, 1230, 1363
CspAI ACCGGT 1 cut(s) 447
CviAII CATG 6 cut(s) 395, 458, 520, 1225, 1639, 1651
CviQI GTAC 3 cut(s) 800, 1230, 1363
DdeI CTNAG 5 cut(s) 570, 710, 1074, 1302, 1601
DpnI GATC 8 cut(s) 80, 282, 513, 608, 845, 897, 924, 1637
DpnII GATC 8 cut(s) 78, 280, 511, 606, 843, 895, 922, 1635
DraIII CACNNNGTG 1 cut(s) 592
EaeI YGGCCR 1 cut(s) 854
Eam1104I CTCTTC 5 cut(s) 519, 535, 569, 657, 1249
EarI CTCTTC 5 cut(s) 519, 535, 569, 657, 1249
Eco147I AGGCCT 1 cut(s) 1559
Eco31I GGTCTC 2 cut(s) 456, 956
Eco47I GGWCC 2 cut(s) 1025, 1163
Eco81I CCTNAGG 1 cut(s) 1302
Eco91I GGTNACC 1 cut(s) 443
EcoNI CCTNNNNNAGG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 328
EcoO65I GGTNACC 1 cut(s) 443
EcoRI GAATTC 2 cut(s) 409, 1331
EcoRII CCWGG 5 cut(s) 164, 1159, 1177, 1566, 1687
FaeI CATG 6 cut(s) 398, 461, 523, 1228, 1642, 1654
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FaqI GGGAC 3 cut(s) 147, 594, 1053
FatI CATG 6 cut(s) 394, 457, 519, 1224, 1638, 1650
FauNDI CATATG 1 cut(s) 219
FbaI TGATCA 3 cut(s) 280, 606, 1635
FblI GTMKAC 1 cut(s) 469
Fnu4HI GCNGC 1 cut(s) 462
FokI GGATG 3 cut(s) 974, 1181, 1262
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 5 cut(s) 152, 290, 473, 1017, 1707
GluI GCNGC 1 cut(s) 462
GsaI CCCAGC 1 cut(s) 657
GsuI CTGGAG 1 cut(s) 362
HaeIII GGCC 6 cut(s) 75, 205, 216, 330, 856, 1559
HapII CCGG 9 cut(s) 23, 251, 359, 379, 448, 1103, 1166, 1412, 1453
HgaI GACGC 1 cut(s) 1636
Hin1II CATG 6 cut(s) 398, 461, 523, 1228, 1642, 1654
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HindIII AAGCTT 1 cut(s) 1128
HinfI GANTC 4 cut(s) 93, 880, 1099, 1282
HpaII CCGG 9 cut(s) 23, 251, 359, 379, 448, 1103, 1166, 1412, 1453
HphI GGTGA 5 cut(s) 205, 368, 418, 455, 604
Hpy166II GTNNAC 4 cut(s) 247, 470, 1025, 1483
Hpy188I TCNGA 9 cut(s) 83, 130, 571, 762, 828, 927, 1075, 1330, 1434
Hpy188III TCNNGA 5 cut(s) 97, 260, 1031, 1484, 1586
Hpy8I GTNNAC 4 cut(s) 247, 470, 1025, 1483
HpyCH4III ACNGT 3 cut(s) 121, 135, 633
HpyF10VI GCNNNNNNNGC 3 cut(s) 222, 231, 1154
HpyF3I CTNAG 5 cut(s) 570, 710, 1074, 1302, 1601
Hsp92II CATG 6 cut(s) 398, 461, 523, 1228, 1642, 1654
Ksp22I TGATCA 3 cut(s) 280, 606, 1635
Kzo9I GATC 8 cut(s) 78, 280, 511, 606, 843, 895, 922, 1635
LmnI GCTCC 3 cut(s) 307, 361, 398
Lsp1109I GCAGC 1 cut(s) 473
MabI ACCWGGT 1 cut(s) 1566
MaeI CTAG 5 cut(s) 152, 290, 473, 1017, 1707
MaeIII GTNAC 7 cut(s) 115, 443, 648, 833, 1105, 1627, 1657
MalI GATC 8 cut(s) 80, 282, 513, 608, 845, 897, 924, 1637
MboI GATC 8 cut(s) 78, 280, 511, 606, 843, 895, 922, 1635
MboII GAAGA 8 cut(s) 112, 536, 552, 556, 674, 946, 1266, 1690
MflI RGATCY 3 cut(s) 78, 511, 843
MlsI TGGCCA 1 cut(s) 856
MluNI TGGCCA 1 cut(s) 856
MlyI GAGTC 4 cut(s) 102, 874, 1093, 1276
MmeI TCCRAC 2 cut(s) 720, 1527
Mox20I TGGCCA 1 cut(s) 856
MroXI GAANNNNTTC 1 cut(s) 1697
MscI TGGCCA 1 cut(s) 856
MseI TTAA 3 cut(s) 39, 1397, 1418
Msp20I TGGCCA 1 cut(s) 856
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 9 cut(s) 23, 251, 359, 379, 448, 1103, 1166, 1412, 1453
MspR9I CCNGG 7 cut(s) 24, 166, 251, 1161, 1179, 1568, 1689
Mva1269I GAATGC 1 cut(s) 1441
MvaI CCWGG 5 cut(s) 166, 1161, 1179, 1568, 1689
MwoI GCNNNNNNNGC 3 cut(s) 222, 231, 1154
NciI CCSGG 2 cut(s) 24, 251
NdeI CATATG 1 cut(s) 219
NdeII GATC 8 cut(s) 78, 280, 511, 606, 843, 895, 922, 1635
NlaIII CATG 6 cut(s) 398, 461, 523, 1228, 1642, 1654
NlaIV GGNNCC 3 cut(s) 21, 1158, 1308
NmuCI GTSAC 3 cut(s) 443, 833, 1657
NspI RCATGY 1 cut(s) 461
PaeI GCATGC 1 cut(s) 461
PceI AGGCCT 1 cut(s) 1559
PctI GAATGC 1 cut(s) 1441
PdmI GAANNNNTTC 1 cut(s) 1697
PflFI GACNNNGTC 1 cut(s) 699
PinAI ACCGGT 1 cut(s) 447
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 4 cut(s) 101, 874, 1093, 1276
PpsI GAGTC 4 cut(s) 101, 874, 1093, 1276
PshAI GACNNNNGTC 1 cut(s) 822
Psp6I CCWGG 5 cut(s) 164, 1159, 1177, 1566, 1687
PspEI GGTNACC 1 cut(s) 443
PspFI CCCAGC 1 cut(s) 653
PspGI CCWGG 5 cut(s) 164, 1159, 1177, 1566, 1687
PspN4I GGNNCC 3 cut(s) 21, 1158, 1308
PspPI GGNCC 4 cut(s) 73, 328, 1025, 1163
PsuI RGATCY 3 cut(s) 78, 511, 843
PsyI GACNNNGTC 1 cut(s) 699
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 3 cut(s) 801, 1231, 1364
RsaNI GTAC 3 cut(s) 800, 1230, 1363
SaqAI TTAA 3 cut(s) 39, 1397, 1418
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 8 cut(s) 78, 280, 511, 606, 843, 895, 922, 1635
Sau96I GGNCC 4 cut(s) 73, 328, 1025, 1163
SchI GAGTC 4 cut(s) 102, 874, 1093, 1276
ScrFI CCNGG 7 cut(s) 24, 166, 251, 1161, 1179, 1568, 1689
SexAI ACCWGGT 1 cut(s) 1566
SinI GGWCC 2 cut(s) 1025, 1163
SmlI CTYRAG 3 cut(s) 1502, 1541, 1586
SmoI CTYRAG 3 cut(s) 1502, 1541, 1586
SpeI ACTAGT 1 cut(s) 472
SphI GCATGC 1 cut(s) 461
SseBI AGGCCT 1 cut(s) 1559
SsiI CCGC 2 cut(s) 675, 1020
SspI AATATT 2 cut(s) 1207, 1471
SspMI CTAG 5 cut(s) 152, 290, 473, 1017, 1707
StuI AGGCCT 1 cut(s) 1559
StyD4I CCNGG 7 cut(s) 22, 164, 249, 1159, 1177, 1566, 1687
TaaI ACNGT 3 cut(s) 121, 135, 633
TaqI TCGA 3 cut(s) 259, 548, 1217
TaqII GACCGA 1 cut(s) 1645
TatI WGTACW 1 cut(s) 799
Tru1I TTAA 3 cut(s) 39, 1397, 1418
Tru9I TTAA 3 cut(s) 39, 1397, 1418
TscAI CASTG 3 cut(s) 126, 206, 345
TseFI GTSAC 3 cut(s) 443, 833, 1657
TseI GCWGC 1 cut(s) 461
Tsp45I GTSAC 3 cut(s) 443, 833, 1657
TspDTI ATGAA 6 cut(s) 17, 627, 709, 1097, 1545, 1568
TspRI CASTG 3 cut(s) 126, 206, 345
Tth111I GACNNNGTC 1 cut(s) 699
VpaK11BI GGWCC 2 cut(s) 1025, 1163
XagI CCTNNNNNAGG 1 cut(s) 210
XapI RAATTY 7 cut(s) 369, 409, 415, 763, 1261, 1331, 1693
XceI RCATGY 1 cut(s) 461
XmiI GTMKAC 1 cut(s) 469
XmnI GAANNNNTTC 1 cut(s) 1697
XspI CTAG 5 cut(s) 152, 290, 473, 1017, 1707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.