ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 402 |
| AccB1I | GGYRCC | 2 cut(s) | 407, 443 |
| AciI | CCGC | 2 cut(s) | 381, 422 |
| AclWI | GGATC | 3 cut(s) | 204, 458, 471 |
| AcoI | YGGCCR | 1 cut(s) | 91 |
| AcyI | GRCGYC | 2 cut(s) | 399, 444 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 188, 193 |
| AgsI | TTSAA | 1 cut(s) | 14 |
| AhlI | ACTAGT | 1 cut(s) | 287 |
| AjnI | CCWGG | 2 cut(s) | 71, 93 |
| AluBI | AGCT | 2 cut(s) | 7, 169 |
| AluI | AGCT | 2 cut(s) | 7, 169 |
| AlwI | GGATC | 3 cut(s) | 204, 458, 471 |
| AoxI | GGCC | 1 cut(s) | 91 |
| ApeKI | GCWGC | 2 cut(s) | 4, 378 |
| AspLEI | GCGC | 1 cut(s) | 446 |
| AspS9I | GGNCC | 3 cut(s) | 59, 162, 273 |
| AsuHPI | GGTGA | 2 cut(s) | 428, 463 |
| AsuII | TTCGAA | 1 cut(s) | 261 |
| AvaII | GGWCC | 3 cut(s) | 59, 162, 273 |
| BalI | TGGCCA | 1 cut(s) | 93 |
| BamHI | GGATCC | 1 cut(s) | 463 |
| BanI | GGYRCC | 2 cut(s) | 407, 443 |
| BauI | CACGAG | 1 cut(s) | 139 |
| BbvI | GCAGC | 2 cut(s) | 16, 390 |
| BccI | CCATC | 3 cut(s) | 183, 215, 380 |
| BciT130I | CCWGG | 2 cut(s) | 73, 95 |
| BcuI | ACTAGT | 1 cut(s) | 287 |
| BfaI | CTAG | 2 cut(s) | 288, 449 |
| BfoI | RGCGCY | 1 cut(s) | 447 |
| BisI | GCNGC | 3 cut(s) | 5, 379, 382 |
| BlsI | GCNGC | 3 cut(s) | 6, 380, 383 |
| Bme1390I | CCNGG | 2 cut(s) | 73, 95 |
| Bme18I | GGWCC | 3 cut(s) | 59, 162, 273 |
| BmgT120I | GGNCC | 3 cut(s) | 59, 162, 273 |
| BmiI | GGNNCC | 5 cut(s) | 164, 243, 409, 445, 465 |
| BmrFI | CCNGG | 2 cut(s) | 73, 95 |
| BmsI | GCATC | 1 cut(s) | 319 |
| Bpu14I | TTCGAA | 1 cut(s) | 261 |
| BsaHI | GRCGYC | 2 cut(s) | 399, 444 |
| BsaJI | CCNNGG | 1 cut(s) | 187 |
| BsaWI | WCCGGW | 2 cut(s) | 61, 255 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 188, 193 |
| BseBI | CCWGG | 2 cut(s) | 73, 95 |
| BseDI | CCNNGG | 1 cut(s) | 187 |
| BseGI | GGATG | 2 cut(s) | 280, 354 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 188, 193 |
| BseMII | CTCAG | 2 cut(s) | 381, 442 |
| BseXI | GCAGC | 2 cut(s) | 16, 390 |
| BseYI | CCCAGC | 1 cut(s) | 165 |
| BshFI | GGCC | 1 cut(s) | 93 |
| BshNI | GGYRCC | 2 cut(s) | 407, 443 |
| BsiSI | CCGG | 4 cut(s) | 62, 256, 375, 411 |
| BslFI | GGGAC | 2 cut(s) | 148, 189 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 188, 193 |
| BsmFI | GGGAC | 2 cut(s) | 148, 189 |
| BsnI | GGCC | 1 cut(s) | 93 |
| Bsp119I | TTCGAA | 1 cut(s) | 261 |
| Bsp143I | GATC | 4 cut(s) | 43, 196, 305, 463 |
| BspACI | CCGC | 2 cut(s) | 381, 422 |
| BspANI | GGCC | 1 cut(s) | 93 |
| BspCNI | CTCAG | 2 cut(s) | 380, 441 |
| BspLI | GGNNCC | 5 cut(s) | 164, 243, 409, 445, 465 |
| BspPI | GGATC | 3 cut(s) | 204, 458, 471 |
| BspQI | GCTCTTC | 1 cut(s) | 176 |
| BspT104I | TTCGAA | 1 cut(s) | 261 |
| BspT107I | GGYRCC | 2 cut(s) | 407, 443 |
| BssECI | CCNNGG | 1 cut(s) | 187 |
| BssMI | GATC | 4 cut(s) | 43, 196, 305, 463 |
| BssNI | GRCGYC | 2 cut(s) | 399, 444 |
| BssSI | CACGAG | 1 cut(s) | 139 |
| BssT1I | CCWWGG | 1 cut(s) | 187 |
| Bst2BI | CACGAG | 1 cut(s) | 139 |
| Bst2UI | CCWGG | 2 cut(s) | 73, 95 |
| Bst6I | CTCTTC | 1 cut(s) | 176 |
| BstACI | GRCGYC | 2 cut(s) | 399, 444 |
| BstBI | TTCGAA | 1 cut(s) | 261 |
| BstDEI | CTNAG | 2 cut(s) | 367, 428 |
| BstF5I | GGATG | 2 cut(s) | 280, 354 |
| BstH2I | RGCGCY | 1 cut(s) | 447 |
| BstHHI | GCGC | 1 cut(s) | 446 |
| BstKTI | GATC | 4 cut(s) | 46, 199, 308, 466 |
| BstMBI | GATC | 4 cut(s) | 43, 196, 305, 463 |
| BstNI | CCWGG | 2 cut(s) | 73, 95 |
| BstSCI | CCNGG | 2 cut(s) | 71, 93 |
| BstV1I | GCAGC | 2 cut(s) | 16, 390 |
| BstX2I | RGATCY | 1 cut(s) | 463 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 214, 460 |
| BstYI | RGATCY | 1 cut(s) | 463 |
| BsuRI | GGCC | 1 cut(s) | 93 |
| BtgZI | GCGATG | 1 cut(s) | 399 |
| BtsCI | GGATG | 2 cut(s) | 280, 354 |
| BtsI | GCAGTG | 1 cut(s) | 28 |
| BtsIMutI | CAGTG | 3 cut(s) | 28, 436, 475 |
| CfoI | GCGC | 1 cut(s) | 446 |
| Cfr13I | GGNCC | 3 cut(s) | 59, 162, 273 |
| CpoI | CGGWCCG | 1 cut(s) | 59 |
| CsiI | ACCWGGT | 1 cut(s) | 71 |
| CspI | CGGWCCG | 1 cut(s) | 59 |
| CviJI | RGCY | 8 cut(s) | 7, 93, 125, 169, 192, 225, 242, 452 |
| CviKI_1 | RGCY | 8 cut(s) | 7, 93, 125, 169, 192, 225, 242, 452 |
| DdeI | CTNAG | 2 cut(s) | 367, 428 |
| DinI | GGCGCC | 1 cut(s) | 445 |
| DpnI | GATC | 4 cut(s) | 45, 198, 307, 465 |
| DpnII | GATC | 4 cut(s) | 43, 196, 305, 463 |
| EaeI | YGGCCR | 1 cut(s) | 91 |
| Eam1104I | CTCTTC | 1 cut(s) | 176 |
| EarI | CTCTTC | 1 cut(s) | 176 |
| Eco130I | CCWWGG | 1 cut(s) | 187 |
| Eco47I | GGWCC | 3 cut(s) | 59, 162, 273 |
| EcoRII | CCWGG | 2 cut(s) | 71, 93 |
| EcoT14I | CCWWGG | 1 cut(s) | 187 |
| EgeI | GGCGCC | 1 cut(s) | 445 |
| EheI | GGCGCC | 1 cut(s) | 445 |
| ErhI | CCWWGG | 1 cut(s) | 187 |
| FaiI | YATR | 2 cut(s) | 90, 271 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 38 |
| FaqI | GGGAC | 2 cut(s) | 148, 189 |
| Fnu4HI | GCNGC | 3 cut(s) | 5, 379, 382 |
| FokI | GGATG | 2 cut(s) | 267, 361 |
| Fsp4HI | GCNGC | 3 cut(s) | 5, 379, 382 |
| FspBI | CTAG | 2 cut(s) | 288, 449 |
| GlaI | GCGC | 1 cut(s) | 445 |
| GluI | GCNGC | 3 cut(s) | 5, 379, 382 |
| GsaI | CCCAGC | 1 cut(s) | 169 |
| HaeII | RGCGCY | 1 cut(s) | 447 |
| HaeIII | GGCC | 1 cut(s) | 93 |
| HapII | CCGG | 4 cut(s) | 62, 256, 375, 411 |
| HhaI | GCGC | 1 cut(s) | 446 |
| Hin1I | GRCGYC | 2 cut(s) | 399, 444 |
| Hin6I | GCGC | 1 cut(s) | 444 |
| HinP1I | GCGC | 1 cut(s) | 444 |
| HinfI | GANTC | 3 cut(s) | 323, 371, 392 |
| HpaII | CCGG | 4 cut(s) | 62, 256, 375, 411 |
| HphI | GGTGA | 2 cut(s) | 428, 463 |
| Hpy166II | GTNNAC | 1 cut(s) | 69 |
| Hpy188I | TCNGA | 7 cut(s) | 43, 196, 305, 328, 370, 397, 404 |
| Hpy188III | TCNNGA | 1 cut(s) | 14 |
| Hpy8I | GTNNAC | 1 cut(s) | 69 |
| Hpy99I | CGWCG | 1 cut(s) | 404 |
| HpyAV | CCTTC | 1 cut(s) | 368 |
| HpyCH4IV | ACGT | 1 cut(s) | 399 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 81, 149 |
| HpyF3I | CTNAG | 2 cut(s) | 367, 428 |
| HpySE526I | ACGT | 1 cut(s) | 399 |
| Hsp92I | GRCGYC | 2 cut(s) | 399, 444 |
| HspAI | GCGC | 1 cut(s) | 444 |
| KasI | GGCGCC | 1 cut(s) | 443 |
| Kzo9I | GATC | 4 cut(s) | 43, 196, 305, 463 |
| LguI | GCTCTTC | 1 cut(s) | 176 |
| LmnI | GCTCC | 2 cut(s) | 247, 337 |
| Lsp1109I | GCAGC | 2 cut(s) | 16, 390 |
| LweI | GCATC | 1 cut(s) | 319 |
| MabI | ACCWGGT | 1 cut(s) | 71 |
| MaeI | CTAG | 2 cut(s) | 288, 449 |
| MaeII | ACGT | 1 cut(s) | 399 |
| MalI | GATC | 4 cut(s) | 45, 198, 307, 465 |
| MboI | GATC | 4 cut(s) | 43, 196, 305, 463 |
| MboII | GAAGA | 1 cut(s) | 163 |
| MflI | RGATCY | 1 cut(s) | 463 |
| MlsI | TGGCCA | 1 cut(s) | 93 |
| MluCI | AATT | 3 cut(s) | 234, 266, 310 |
| MluNI | TGGCCA | 1 cut(s) | 93 |
| Mly113I | GGCGCC | 1 cut(s) | 444 |
| MlyI | GAGTC | 1 cut(s) | 317 |
| MmeI | TCCRAC | 1 cut(s) | 382 |
| MnlI | CCTC | 5 cut(s) | 192, 258, 398, 407, 477 |
| Mox20I | TGGCCA | 1 cut(s) | 93 |
| MscI | TGGCCA | 1 cut(s) | 93 |
| MseI | TTAA | 2 cut(s) | 132, 237 |
| Msp20I | TGGCCA | 1 cut(s) | 93 |
| MspA1I | CMGCKG | 1 cut(s) | 381 |
| MspI | CCGG | 4 cut(s) | 62, 256, 375, 411 |
| MspR9I | CCNGG | 2 cut(s) | 73, 95 |
| MvaI | CCWGG | 2 cut(s) | 73, 95 |
| NarI | GGCGCC | 1 cut(s) | 444 |
| NdeII | GATC | 4 cut(s) | 43, 196, 305, 463 |
| NlaIV | GGNNCC | 5 cut(s) | 164, 243, 409, 445, 465 |
| NspV | TTCGAA | 1 cut(s) | 261 |
| PciSI | GCTCTTC | 1 cut(s) | 176 |
| PfeI | GAWTC | 2 cut(s) | 371, 392 |
| PflFI | GACNNNGTC | 1 cut(s) | 299 |
| PkrI | GCNGC | 3 cut(s) | 6, 380, 383 |
| PleI | GAGTC | 1 cut(s) | 317 |
| PluTI | GGCGCC | 1 cut(s) | 447 |
| PpsI | GAGTC | 1 cut(s) | 317 |
| Psp6I | CCWGG | 2 cut(s) | 71, 93 |
| PspFI | CCCAGC | 1 cut(s) | 165 |
| PspGI | CCWGG | 2 cut(s) | 71, 93 |
| PspN4I | GGNNCC | 5 cut(s) | 164, 243, 409, 445, 465 |
| PspPI | GGNCC | 3 cut(s) | 59, 162, 273 |
| PsuI | RGATCY | 1 cut(s) | 463 |
| PsyI | GACNNNGTC | 1 cut(s) | 299 |
| Rsr2I | CGGWCCG | 1 cut(s) | 59 |
| RsrII | CGGWCCG | 1 cut(s) | 59 |
| SapI | GCTCTTC | 1 cut(s) | 176 |
| SaqAI | TTAA | 2 cut(s) | 132, 237 |
| SatI | GCNGC | 3 cut(s) | 5, 379, 382 |
| Sau3AI | GATC | 4 cut(s) | 43, 196, 305, 463 |
| Sau96I | GGNCC | 3 cut(s) | 59, 162, 273 |
| SchI | GAGTC | 1 cut(s) | 317 |
| ScrFI | CCNGG | 2 cut(s) | 73, 95 |
| SetI | ASST | 9 cut(s) | 9, 74, 99, 171, 250, 360, 402, 409, 418 |
| SexAI | ACCWGGT | 1 cut(s) | 71 |
| SfaNI | GCATC | 1 cut(s) | 319 |
| SfoI | GGCGCC | 1 cut(s) | 445 |
| SfuI | TTCGAA | 1 cut(s) | 261 |
| SinI | GGWCC | 3 cut(s) | 59, 162, 273 |
| SpeI | ACTAGT | 1 cut(s) | 287 |
| Sse9I | AATT | 3 cut(s) | 234, 266, 310 |
| SsiI | CCGC | 2 cut(s) | 381, 422 |
| SspDI | GGCGCC | 1 cut(s) | 443 |
| SspMI | CTAG | 2 cut(s) | 288, 449 |
| StyD4I | CCNGG | 2 cut(s) | 71, 93 |
| StyI | CCWWGG | 1 cut(s) | 187 |
| TaiI | ACGT | 1 cut(s) | 402 |
| TaqI | TCGA | 1 cut(s) | 261 |
| TaqII | GACCGA | 1 cut(s) | 150 |
| TasI | AATT | 3 cut(s) | 234, 266, 310 |
| TauI | GCSGC | 1 cut(s) | 384 |
| TfiI | GAWTC | 2 cut(s) | 371, 392 |
| Tru1I | TTAA | 2 cut(s) | 132, 237 |
| Tru9I | TTAA | 2 cut(s) | 132, 237 |
| TscAI | CASTG | 2 cut(s) | 35, 436 |
| TseI | GCWGC | 2 cut(s) | 4, 378 |
| TspDTI | ATGAA | 1 cut(s) | 350 |
| TspGWI | ACGGA | 1 cut(s) | 72 |
| TspRI | CASTG | 2 cut(s) | 35, 436 |
| Tth111I | GACNNNGTC | 1 cut(s) | 299 |
| VpaK11BI | GGWCC | 3 cut(s) | 59, 162, 273 |
| XspI | CTAG | 2 cut(s) | 288, 449 |
| ZraI | GACGTC | 1 cut(s) | 400 |