ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 19 - 192 | 1.1e-07 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 125 |
| AccIII | TCCGGA | 1 cut(s) | 658 |
| AcsI | RAATTY | 2 cut(s) | 53, 508 |
| AfaI | GTAC | 1 cut(s) | 226 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 562, 563 |
| AflIII | ACRYGT | 1 cut(s) | 63 |
| AgsI | TTSAA | 3 cut(s) | 32, 319, 431 |
| AjnI | CCWGG | 3 cut(s) | 296, 387, 446 |
| AluBI | AGCT | 5 cut(s) | 123, 150, 599, 617, 673 |
| AluI | AGCT | 5 cut(s) | 123, 150, 599, 617, 673 |
| Alw26I | GTCTC | 2 cut(s) | 139, 367 |
| Aor13HI | TCCGGA | 1 cut(s) | 658 |
| AoxI | GGCC | 3 cut(s) | 85, 352, 433 |
| ApoI | RAATTY | 2 cut(s) | 53, 508 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 50, 82 |
| AseI | ATTAAT | 1 cut(s) | 165 |
| AspS9I | GGNCC | 2 cut(s) | 434, 648 |
| AsuHPI | GGTGA | 1 cut(s) | 466 |
| AsuII | TTCGAA | 1 cut(s) | 636 |
| AvaII | GGWCC | 1 cut(s) | 648 |
| BbsI | GAAGAC | 1 cut(s) | 50 |
| BccI | CCATC | 2 cut(s) | 537, 558 |
| BciT130I | CCWGG | 3 cut(s) | 298, 389, 448 |
| BciVI | GTATCC | 1 cut(s) | 279 |
| BcoDI | GTCTC | 2 cut(s) | 139, 367 |
| BfaI | CTAG | 3 cut(s) | 147, 285, 688 |
| BfmI | CTRYAG | 1 cut(s) | 81 |
| BfuI | GTATCC | 1 cut(s) | 279 |
| Bme1390I | CCNGG | 3 cut(s) | 298, 389, 448 |
| Bme18I | GGWCC | 1 cut(s) | 648 |
| BmgT120I | GGNCC | 2 cut(s) | 434, 648 |
| BmrFI | CCNGG | 3 cut(s) | 298, 389, 448 |
| BoxI | GACNNNNGTC | 1 cut(s) | 498 |
| BpiI | GAAGAC | 1 cut(s) | 50 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 364, 396 |
| BpmI | CTGGAG | 1 cut(s) | 121 |
| Bpu14I | TTCGAA | 1 cut(s) | 636 |
| BpuEI | CTTGAG | 1 cut(s) | 525 |
| BsaJI | CCNNGG | 1 cut(s) | 296 |
| BsaWI | WCCGGW | 1 cut(s) | 658 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 562, 563 |
| Bse1I | ACTGG | 1 cut(s) | 138 |
| BseAI | TCCGGA | 1 cut(s) | 658 |
| BseBI | CCWGG | 3 cut(s) | 298, 389, 448 |
| BseDI | CCNNGG | 1 cut(s) | 296 |
| BseGI | GGATG | 2 cut(s) | 222, 655 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 562, 563 |
| BseMII | CTCAG | 2 cut(s) | 609, 683 |
| BseNI | ACTGG | 1 cut(s) | 138 |
| BshFI | GGCC | 3 cut(s) | 87, 354, 435 |
| BsiSI | CCGG | 2 cut(s) | 272, 659 |
| BslFI | GGGAC | 2 cut(s) | 131, 326 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 562, 563 |
| BsmAI | GTCTC | 2 cut(s) | 139, 367 |
| BsmFI | GGGAC | 2 cut(s) | 131, 326 |
| BsnI | GGCC | 3 cut(s) | 87, 354, 435 |
| Bsp119I | TTCGAA | 1 cut(s) | 636 |
| Bsp13I | TCCGGA | 1 cut(s) | 658 |
| Bsp143I | GATC | 1 cut(s) | 418 |
| BspANI | GGCC | 3 cut(s) | 87, 354, 435 |
| BspCNI | CTCAG | 2 cut(s) | 608, 682 |
| BspEI | TCCGGA | 1 cut(s) | 658 |
| BspT104I | TTCGAA | 1 cut(s) | 636 |
| BsrI | ACTGG | 1 cut(s) | 138 |
| BssECI | CCNNGG | 1 cut(s) | 296 |
| BssMI | GATC | 1 cut(s) | 418 |
| Bst2UI | CCWGG | 3 cut(s) | 298, 389, 448 |
| Bst4CI | ACNGT | 2 cut(s) | 175, 203 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 512 |
| BstBI | TTCGAA | 1 cut(s) | 636 |
| BstDEI | CTNAG | 3 cut(s) | 595, 621, 669 |
| BstF5I | GGATG | 2 cut(s) | 222, 655 |
| BstKTI | GATC | 1 cut(s) | 421 |
| BstMAI | GTCTC | 2 cut(s) | 139, 367 |
| BstMBI | GATC | 1 cut(s) | 418 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 512 |
| BstNI | CCWGG | 3 cut(s) | 298, 389, 448 |
| BstNSI | RCATGY | 1 cut(s) | 67 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 498 |
| BstSCI | CCNGG | 3 cut(s) | 296, 387, 446 |
| BstSFI | CTRYAG | 1 cut(s) | 81 |
| BstV2I | GAAGAC | 1 cut(s) | 50 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 95, 589 |
| BsuI | GTATCC | 1 cut(s) | 279 |
| BsuRI | GGCC | 3 cut(s) | 87, 354, 435 |
| BtsCI | GGATG | 2 cut(s) | 222, 655 |
| BtsIMutI | CAGTG | 2 cut(s) | 47, 199 |
| Cfr13I | GGNCC | 2 cut(s) | 434, 648 |
| CsiI | ACCWGGT | 1 cut(s) | 446 |
| Csp6I | GTAC | 1 cut(s) | 225 |
| CviAII | CATG | 4 cut(s) | 64, 213, 233, 338 |
| CviQI | GTAC | 1 cut(s) | 225 |
| DdeI | CTNAG | 3 cut(s) | 595, 621, 669 |
| DpnI | GATC | 1 cut(s) | 420 |
| DpnII | GATC | 1 cut(s) | 418 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 125 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 125 |
| Eco47I | GGWCC | 1 cut(s) | 648 |
| EcoO109I | RGGNCCY | 1 cut(s) | 434 |
| EcoRII | CCWGG | 3 cut(s) | 296, 387, 446 |
| FaeI | CATG | 4 cut(s) | 67, 216, 236, 341 |
| FaiI | YATR | 9 cut(s) | 65, 90, 143, 162, 214, 222, 234, 339, 584 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 474, 506 |
| FaqI | GGGAC | 2 cut(s) | 131, 326 |
| FatI | CATG | 4 cut(s) | 63, 212, 232, 337 |
| FokI | GGATG | 2 cut(s) | 229, 642 |
| FspBI | CTAG | 3 cut(s) | 147, 285, 688 |
| GsuI | CTGGAG | 1 cut(s) | 121 |
| HaeIII | GGCC | 3 cut(s) | 87, 354, 435 |
| HapII | CCGG | 2 cut(s) | 272, 659 |
| Hin1II | CATG | 4 cut(s) | 67, 216, 236, 341 |
| HinfI | GANTC | 6 cut(s) | 7, 325, 375, 471, 538, 593 |
| HpaII | CCGG | 2 cut(s) | 272, 659 |
| HphI | GGTGA | 1 cut(s) | 466 |
| Hpy166II | GTNNAC | 2 cut(s) | 648, 679 |
| Hpy188I | TCNGA | 4 cut(s) | 154, 190, 418, 571 |
| Hpy188III | TCNNGA | 4 cut(s) | 408, 460, 590, 659 |
| Hpy8I | GTNNAC | 2 cut(s) | 648, 679 |
| HpyAV | CCTTC | 1 cut(s) | 365 |
| HpyCH4III | ACNGT | 2 cut(s) | 175, 203 |
| HpyCH4V | TGCA | 1 cut(s) | 306 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 512 |
| HpyF3I | CTNAG | 3 cut(s) | 595, 621, 669 |
| Hsp92II | CATG | 4 cut(s) | 67, 216, 236, 341 |
| Kpn2I | TCCGGA | 1 cut(s) | 658 |
| Kzo9I | GATC | 1 cut(s) | 418 |
| LmnI | GCTCC | 1 cut(s) | 604 |
| MabI | ACCWGGT | 1 cut(s) | 446 |
| MaeI | CTAG | 3 cut(s) | 147, 285, 688 |
| MalI | GATC | 1 cut(s) | 420 |
| MboI | GATC | 1 cut(s) | 418 |
| MboII | GAAGA | 3 cut(s) | 52, 55, 413 |
| MluCI | AATT | 4 cut(s) | 53, 157, 508, 560 |
| MlyI | GAGTC | 3 cut(s) | 369, 532, 587 |
| MnlI | CCTC | 4 cut(s) | 184, 369, 407, 661 |
| MroI | TCCGGA | 1 cut(s) | 658 |
| MseI | TTAA | 4 cut(s) | 75, 165, 237, 480 |
| MslI | CAYNNNNRTG | 1 cut(s) | 93 |
| MspI | CCGG | 2 cut(s) | 272, 659 |
| MspR9I | CCNGG | 3 cut(s) | 298, 389, 448 |
| MvaI | CCWGG | 3 cut(s) | 298, 389, 448 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 512 |
| NdeII | GATC | 1 cut(s) | 418 |
| NlaIII | CATG | 4 cut(s) | 67, 216, 236, 341 |
| NspI | RCATGY | 1 cut(s) | 67 |
| NspV | TTCGAA | 1 cut(s) | 636 |
| PciI | ACATGT | 1 cut(s) | 63 |
| PfeI | GAWTC | 2 cut(s) | 325, 471 |
| PfoI | TCCNGGA | 1 cut(s) | 387 |
| PleI | GAGTC | 3 cut(s) | 369, 532, 587 |
| PpsI | GAGTC | 3 cut(s) | 369, 532, 587 |
| PscI | ACATGT | 1 cut(s) | 63 |
| PshAI | GACNNNNGTC | 1 cut(s) | 498 |
| PshBI | ATTAAT | 1 cut(s) | 165 |
| Psp6I | CCWGG | 3 cut(s) | 296, 387, 446 |
| PspGI | CCWGG | 3 cut(s) | 296, 387, 446 |
| PspPI | GGNCC | 2 cut(s) | 434, 648 |
| RsaI | GTAC | 1 cut(s) | 226 |
| RsaNI | GTAC | 1 cut(s) | 225 |
| RseI | CAYNNNNRTG | 1 cut(s) | 93 |
| SaqAI | TTAA | 4 cut(s) | 75, 165, 237, 480 |
| Sau3AI | GATC | 1 cut(s) | 418 |
| Sau96I | GGNCC | 2 cut(s) | 434, 648 |
| SchI | GAGTC | 3 cut(s) | 369, 532, 587 |
| ScrFI | CCNGG | 3 cut(s) | 298, 389, 448 |
| SetI | ASST | 8 cut(s) | 125, 152, 449, 601, 619, 645, 653, 675 |
| SexAI | ACCWGGT | 1 cut(s) | 446 |
| SfcI | CTRYAG | 1 cut(s) | 81 |
| SfuI | TTCGAA | 1 cut(s) | 636 |
| SinI | GGWCC | 1 cut(s) | 648 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 93 |
| SmlI | CTYRAG | 1 cut(s) | 540 |
| SmoI | CTYRAG | 1 cut(s) | 540 |
| Sse9I | AATT | 4 cut(s) | 53, 157, 508, 560 |
| SspI | AATATT | 1 cut(s) | 208 |
| SspMI | CTAG | 3 cut(s) | 147, 285, 688 |
| StyD4I | CCNGG | 3 cut(s) | 296, 387, 446 |
| TaaI | ACNGT | 2 cut(s) | 175, 203 |
| TaqI | TCGA | 2 cut(s) | 361, 636 |
| TasI | AATT | 4 cut(s) | 53, 157, 508, 560 |
| TfiI | GAWTC | 2 cut(s) | 325, 471 |
| Tru1I | TTAA | 4 cut(s) | 75, 165, 237, 480 |
| Tru9I | TTAA | 4 cut(s) | 75, 165, 237, 480 |
| TscAI | CASTG | 2 cut(s) | 54, 206 |
| TspDTI | ATGAA | 4 cut(s) | 172, 201, 354, 413 |
| TspGWI | ACGGA | 1 cut(s) | 620 |
| TspRI | CASTG | 2 cut(s) | 54, 206 |
| VpaK11BI | GGWCC | 1 cut(s) | 648 |
| VspI | ATTAAT | 1 cut(s) | 165 |
| XapI | RAATTY | 2 cut(s) | 53, 508 |
| XceI | RCATGY | 1 cut(s) | 67 |
| XspI | CTAG | 3 cut(s) | 147, 285, 688 |