Rh7CG425700

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000147
Physical Location & Seq
Reverse (-)
55356358 .. 55357269
912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG425700.1

Sequence Viewer

Length: 912 bp
ATGGGGAAGCCCATGTTAATCAGAAAAATGTATTATGGCGTTCTCTATACACTGCTTTCTCTCCACATATTGGCCCTTGGTTATGTTTGGGTGACTTTAATGAGATCCTTTGGCTCTCTGAAAAGTGGGGGGGGTCTCCCTCAACCTCAGTGGAGAATCAATCTCTTCCAAGGCTTTTTGAATCACTCTCAATTAACTAATCTTCATTTTCAGGGACCTGAATTCACATGCCACTGTTTTCAACATGGGAAGGTGGTCATCAAGGAAAGGTTGGACTGTGCTTTGGCCAATAATTCTTGGATTGTTAATCAATCCCGATCTCAAATTTTCCATCTTCCTTTACTGGGATCTAATCATCGACCAATATTGGTTGACACAGCTCCTGCTCAAAAAATTAACCCTCTTCTCTTCCGTTTTGAGCATCTTTGGACTCTCCACCCTGCGAGCGATCAGATCGTGCAAGAAAATTGGAACCCTTGTCTTCCTCCTTCTGCTAGCGTTTCTTGGGCTAGAAATTTGCAAAGCTGCAAATCCTCCCTTGGTTCTTGGGCCAAAAATACTTTCCCAAACTTTGGAAAACAGGTCAGCTCTAATATCAATCTAATCCAAACCCTTTTGGATTCTGATCAGGATGAAATTCAGGGGGATATCTCTACTGCTACTAATCAAATTGCTTCTCTTTGGTCTCTTGAAGAAGTTTATTGGAAGCAGAGATCCCGCATTTCATGGCTGGCCCATAGGGATCTTAATACTCATTTTTCCACCAAAGCACTTTACTCCGCAGAAGCCAGAACAAAATTCTTCGGCTTAACAACGGTTTTGGTCAGTGGTTATCCACGGAGGATTCTATTGTCTCTCATCTCAACAGCTATTTCAAGGATATGTACACATGTACACAGCCACACCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

303

Amino Acids

34.42

Weight (kDa)

9.58

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 70, 572
AciI CCGC 2 cut(s) 718, 780
AclWI GGATC 4 cut(s) 99, 355, 708, 750
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 5 cut(s) 221, 324, 514, 636, 797
AfaI GTAC 2 cut(s) 886, 894
AfiI CCNNNNNNNGG 3 cut(s) 70, 344, 572
AflIII ACRYGT 1 cut(s) 889
AgsI TTSAA 4 cut(s) 181, 242, 692, 876
AjuI GAANNNNNNNTTGG 2 cut(s) 545, 577
AluBI AGCT 4 cut(s) 380, 525, 588, 869
AluI AGCT 4 cut(s) 380, 525, 588, 869
Alw26I GTCTC 3 cut(s) 140, 690, 858
AlwI GGATC 4 cut(s) 99, 355, 708, 750
AlwNI CAGNNNCTG 1 cut(s) 383
AoxI GGCC 4 cut(s) 72, 285, 549, 732
ApeKI GCWGC 1 cut(s) 525
ApoI RAATTY 5 cut(s) 221, 324, 514, 636, 797
AspS9I GGNCC 4 cut(s) 73, 215, 549, 733
AsuHPI GGTGA 1 cut(s) 103
AsuNHI GCTAGC 1 cut(s) 494
AvaII GGWCC 1 cut(s) 215
BalI TGGCCA 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 473
BbvI GCAGC 1 cut(s) 512
BccI CCATC 1 cut(s) 339
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 3 cut(s) 140, 690, 858
BfaI CTAG 2 cut(s) 495, 510
BisI GCNGC 1 cut(s) 526
BlsI GCNGC 1 cut(s) 527
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 4 cut(s) 73, 215, 549, 733
BmiI GGNNCC 2 cut(s) 216, 473
BmrI ACTGGG 1 cut(s) 353
BmsI GCATC 1 cut(s) 430
BmtI GCTAGC 1 cut(s) 498
BmuI ACTGGG 1 cut(s) 353
BpiI GAAGAC 1 cut(s) 473
BsaBI GATNNNNATC 1 cut(s) 624
BsaI GGTCTC 2 cut(s) 140, 690
BsaJI CCNNGG 4 cut(s) 76, 169, 538, 836
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 344, 572
Bse1I ACTGG 1 cut(s) 348
Bse8I GATNNNNATC 1 cut(s) 624
BseDI CCNNGG 4 cut(s) 76, 169, 538, 836
BseGI GGATG 1 cut(s) 637
BseJI GATNNNNATC 1 cut(s) 624
BseLI CCNNNNNNNGG 3 cut(s) 70, 344, 572
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 512
BshFI GGCC 4 cut(s) 74, 287, 551, 734
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 3 cut(s) 70, 344, 572
BsmAI GTCTC 3 cut(s) 140, 690, 858
BsmFI GGGAC 1 cut(s) 228
BsnI GGCC 4 cut(s) 74, 287, 551, 734
Bso31I GGTCTC 2 cut(s) 140, 690
Bsp1407I TGTACA 2 cut(s) 884, 892
Bsp143I GATC 8 cut(s) 104, 317, 347, 448, 453, 625, 713, 742
BspACI CCGC 2 cut(s) 718, 780
BspANI GGCC 4 cut(s) 74, 287, 551, 734
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 216, 473
BspOI GCTAGC 1 cut(s) 498
BspPI GGATC 4 cut(s) 99, 355, 708, 750
BspTNI GGTCTC 2 cut(s) 140, 690
BsrGI TGTACA 2 cut(s) 884, 892
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 4 cut(s) 76, 169, 538, 836
BssMI GATC 8 cut(s) 104, 317, 347, 448, 453, 625, 713, 742
BssT1I CCWWGG 3 cut(s) 76, 169, 538
Bst4CI ACNGT 3 cut(s) 236, 278, 817
Bst6I CTCTTC 3 cut(s) 170, 408, 413
BstAUI TGTACA 2 cut(s) 884, 892
BstC8I GCNNGC 3 cut(s) 445, 496, 732
BstDEI CTNAG 1 cut(s) 147
BstDSI CCRYGG 1 cut(s) 836
BstF5I GGATG 1 cut(s) 637
BstKTI GATC 8 cut(s) 107, 320, 350, 451, 456, 628, 716, 745
BstMAI GTCTC 3 cut(s) 140, 690, 858
BstMBI GATC 8 cut(s) 104, 317, 347, 448, 453, 625, 713, 742
BstNSI RCATGY 2 cut(s) 231, 893
BstV1I GCAGC 1 cut(s) 512
BstV2I GAAGAC 1 cut(s) 473
BstX2I RGATCY 4 cut(s) 104, 347, 713, 742
BstYI RGATCY 4 cut(s) 104, 347, 713, 742
BsuRI GGCC 4 cut(s) 74, 287, 551, 734
BtgI CCRYGG 1 cut(s) 836
BtsCI GGATG 1 cut(s) 637
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 4 cut(s) 50, 155, 232, 832
Cac8I GCNNGC 3 cut(s) 445, 496, 732
CaiI CAGNNNCTG 1 cut(s) 383
Cfr13I GGNCC 4 cut(s) 73, 215, 549, 733
Csp6I GTAC 2 cut(s) 885, 893
CspCI CAANNNNNGTGG 2 cut(s) 131, 166
CviAII CATG 5 cut(s) 13, 228, 245, 726, 890
CviQI GTAC 2 cut(s) 885, 893
DdeI CTNAG 1 cut(s) 147
DpnI GATC 8 cut(s) 106, 319, 349, 450, 455, 627, 715, 744
DpnII GATC 8 cut(s) 104, 317, 347, 448, 453, 625, 713, 742
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 3 cut(s) 170, 408, 413
EarI CTCTTC 3 cut(s) 170, 408, 413
Eco130I CCWWGG 3 cut(s) 76, 169, 538
Eco31I GGTCTC 2 cut(s) 140, 690
Eco32I GATATC 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 221
EcoRV GATATC 1 cut(s) 649
EcoT14I CCWWGG 3 cut(s) 76, 169, 538
ErhI CCWWGG 3 cut(s) 76, 169, 538
FaeI CATG 5 cut(s) 16, 231, 248, 729, 893
FaqI GGGAC 1 cut(s) 228
FatI CATG 5 cut(s) 12, 227, 244, 725, 889
FauI CCCGC 1 cut(s) 725
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 1 cut(s) 526
FokI GGATG 1 cut(s) 644
Fsp4HI GCNGC 1 cut(s) 526
FspBI CTAG 2 cut(s) 495, 510
GluI GCNGC 1 cut(s) 526
HaeIII GGCC 4 cut(s) 74, 287, 551, 734
Hin1II CATG 5 cut(s) 16, 231, 248, 729, 893
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 5 cut(s) 156, 181, 430, 620, 844
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 3 cut(s) 373, 887, 895
Hpy188I TCNGA 4 cut(s) 23, 120, 453, 625
Hpy188III TCNNGA 3 cut(s) 315, 629, 689
Hpy8I GTNNAC 3 cut(s) 373, 887, 895
HpyAV CCTTC 2 cut(s) 244, 498
HpyCH4III ACNGT 3 cut(s) 236, 278, 817
HpyCH4V TGCA 3 cut(s) 460, 520, 528
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 5 cut(s) 16, 231, 248, 729, 893
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 8 cut(s) 104, 317, 347, 448, 453, 625, 713, 742
LmnI GCTCC 1 cut(s) 385
Lsp1109I GCAGC 1 cut(s) 512
LweI GCATC 1 cut(s) 430
MaeI CTAG 2 cut(s) 495, 510
MaeIII GTNAC 1 cut(s) 91
MalI GATC 8 cut(s) 106, 319, 349, 450, 455, 627, 715, 744
MboI GATC 8 cut(s) 104, 317, 347, 448, 453, 625, 713, 742
MboII GAAGA 8 cut(s) 157, 194, 326, 395, 400, 473, 704, 793
MflI RGATCY 4 cut(s) 104, 347, 713, 742
MlsI TGGCCA 1 cut(s) 287
MluNI TGGCCA 1 cut(s) 287
MlyI GAGTC 1 cut(s) 424
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 6 cut(s) 150, 156, 411, 495, 544, 834
Mox20I TGGCCA 1 cut(s) 287
MscI TGGCCA 1 cut(s) 287
MseI TTAA 7 cut(s) 17, 98, 194, 306, 396, 747, 809
Msp20I TGGCCA 1 cut(s) 287
NdeII GATC 8 cut(s) 104, 317, 347, 448, 453, 625, 713, 742
NheI GCTAGC 1 cut(s) 494
NlaIII CATG 5 cut(s) 16, 231, 248, 729, 893
NlaIV GGNNCC 2 cut(s) 216, 473
NmuCI GTSAC 1 cut(s) 91
NspI RCATGY 2 cut(s) 231, 893
PciI ACATGT 1 cut(s) 889
PfeI GAWTC 4 cut(s) 156, 181, 620, 844
PflMI CCANNNNNTGG 2 cut(s) 70, 572
PkrI GCNGC 1 cut(s) 527
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
PpuMI RGGWCCY 1 cut(s) 215
PscI ACATGT 1 cut(s) 889
Psp5II RGGWCCY 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 216, 473
PspPI GGNCC 4 cut(s) 73, 215, 549, 733
PspPPI RGGWCCY 1 cut(s) 215
PstNI CAGNNNCTG 1 cut(s) 383
PsuI RGATCY 4 cut(s) 104, 347, 713, 742
RsaI GTAC 2 cut(s) 886, 894
RsaNI GTAC 2 cut(s) 885, 893
SaqAI TTAA 7 cut(s) 17, 98, 194, 306, 396, 747, 809
SatI GCNGC 1 cut(s) 526
Sau3AI GATC 8 cut(s) 104, 317, 347, 448, 453, 625, 713, 742
Sau96I GGNCC 4 cut(s) 73, 215, 549, 733
SchI GAGTC 1 cut(s) 424
SetI ASST 9 cut(s) 148, 220, 255, 272, 382, 527, 585, 590, 871
SfaNI GCATC 1 cut(s) 430
SinI GGWCC 1 cut(s) 215
SsiI CCGC 2 cut(s) 718, 780
SspI AATATT 1 cut(s) 366
SspMI CTAG 2 cut(s) 495, 510
StyI CCWWGG 3 cut(s) 76, 169, 538
TaaI ACNGT 3 cut(s) 236, 278, 817
TaqI TCGA 1 cut(s) 358
TatI WGTACW 2 cut(s) 884, 892
TfiI GAWTC 4 cut(s) 156, 181, 620, 844
Tru1I TTAA 7 cut(s) 17, 98, 194, 306, 396, 747, 809
Tru9I TTAA 7 cut(s) 17, 98, 194, 306, 396, 747, 809
TscAI CASTG 4 cut(s) 57, 155, 239, 832
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 525
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 3 cut(s) 194, 648, 714
TspGWI ACGGA 2 cut(s) 401, 853
TspRI CASTG 4 cut(s) 57, 155, 239, 832
Van91I CCANNNNNTGG 2 cut(s) 70, 572
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 5 cut(s) 221, 324, 514, 636, 797
XceI RCATGY 2 cut(s) 231, 893
XspI CTAG 2 cut(s) 495, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.