Rmu_sc0000041.1_g000012

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000041.1
OG0000147
Physical Location & Seq
Forward (+)
41022 .. 41453
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000041.1_g000012.1.cds

Sequence Viewer

Length: 432 bp
atgggatactatttgggttttaatgttgacccaataaacacggctagtggtttgagcctttggtggaaaaatgattacaaggttgatataattgacttttcaaagcactttattgatactgagatcactttattagatgacatctttaaagtgagaatcacttggatgtacggtcccccttacaacattgagaaatctgagttttggaatgcatggaataattggtgtcgtggtgacgatactccatggttggttatcggtgacctaaatgagctcctctgccaaaatgaaatggaaggtggtgtccctttgaatccaaatcgaagacagtttctatgtacttttctaaatacaaatcggttactggacattagctataaaggccaaaggttcacttgggtgagtgaggaaggtgatgagattgttctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

143

Amino Acids

16.88

Weight (kDa)

4.45

Isoelectric Point (pI)

27.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 170, 340
AgsI TTSAA 2 cut(s) 102, 313
AleI CACNNNNGTG 1 cut(s) 398
AluBI AGCT 2 cut(s) 274, 375
AluI AGCT 2 cut(s) 274, 375
Alw21I GWGCWC 1 cut(s) 276
AoxI GGCC 1 cut(s) 382
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 4 cut(s) 245, 272, 412, 425
AvaII GGWCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 276
BbsI GAAGAC 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 276
BceAI ACGGC 1 cut(s) 57
BfaI CTAG 1 cut(s) 45
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 175
BpiI GAAGAC 1 cut(s) 331
BsaJI CCNNGG 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 1 cut(s) 171
BseMII CTCAG 2 cut(s) 111, 189
BseNI ACTGG 1 cut(s) 369
BseRI GAGGAG 1 cut(s) 266
BshFI GGCC 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 276
BslFI GGGAC 2 cut(s) 159, 290
BsmFI GGGAC 2 cut(s) 159, 290
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 1 cut(s) 384
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 1 cut(s) 123
Bsp19I CCATGG 1 cut(s) 245
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 2 cut(s) 112, 190
BspLI GGNNCC 1 cut(s) 175
BsrI ACTGG 1 cut(s) 369
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 173, 330
BstDEI CTNAG 2 cut(s) 120, 198
BstDSI CCRYGG 1 cut(s) 245
BstEII GGTNACC 1 cut(s) 260
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 381
BstPI GGTNACC 1 cut(s) 260
BstV2I GAAGAC 1 cut(s) 331
BsuRI GGCC 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 245
BtsCI GGATG 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 169, 339
CviAII CATG 2 cut(s) 213, 246
CviJI RGCY 5 cut(s) 44, 57, 274, 375, 384
CviKI_1 RGCY 5 cut(s) 44, 57, 274, 375, 384
CviQI GTAC 2 cut(s) 169, 339
DdeI CTNAG 2 cut(s) 120, 198
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
DraI TTTAAA 1 cut(s) 148
Ecl136II GAGCTC 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 274
Eco91I GGTNACC 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 274
EcoO65I GGTNACC 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 245
EcoT22I ATGCAT 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 2 cut(s) 216, 249
FaiI YATR 5 cut(s) 89, 214, 247, 337, 378
FalI AAGNNNNNCTT 2 cut(s) 379, 411
FaqI GGGAC 2 cut(s) 159, 290
FatI CATG 2 cut(s) 212, 245
FokI GGATG 1 cut(s) 178
FriOI GRGCYC 1 cut(s) 276
FspBI CTAG 1 cut(s) 45
HaeIII GGCC 1 cut(s) 384
Hin1II CATG 2 cut(s) 216, 249
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 2 cut(s) 156, 313
HphI GGTGA 4 cut(s) 245, 272, 412, 425
Hpy166II GTNNAC 2 cut(s) 28, 393
Hpy188I TCNGA 1 cut(s) 199
Hpy8I GTNNAC 2 cut(s) 28, 393
HpyAV CCTTC 2 cut(s) 290, 404
HpyCH4III ACNGT 2 cut(s) 173, 330
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 381
HpyF3I CTNAG 2 cut(s) 120, 198
Hsp92II CATG 2 cut(s) 216, 249
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 279
LpnPI CCDG 1 cut(s) 350
MaeI CTAG 1 cut(s) 45
MaeIII GTNAC 3 cut(s) 233, 260, 360
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 1 cut(s) 336
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 2 cut(s) 90, 220
MnlI CCTC 2 cut(s) 287, 400
Mph1103I ATGCAT 1 cut(s) 214
MseI TTAA 3 cut(s) 21, 147, 430
MslI CAYNNNNRTG 2 cut(s) 164, 398
Mva1269I GAATGC 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 381
NcoI CCATGG 1 cut(s) 245
NdeII GATC 1 cut(s) 123
NlaIII CATG 2 cut(s) 216, 249
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 2 cut(s) 233, 260
NsiI ATGCAT 1 cut(s) 214
OliI CACNNNNGTG 1 cut(s) 398
PctI GAATGC 1 cut(s) 214
PfeI GAWTC 2 cut(s) 156, 313
Psp124BI GAGCTC 1 cut(s) 276
PspEI GGTNACC 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 1 cut(s) 173
RsaI GTAC 2 cut(s) 170, 340
RsaNI GTAC 2 cut(s) 169, 339
RseI CAYNNNNRTG 2 cut(s) 164, 398
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 3 cut(s) 21, 147, 430
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 1 cut(s) 173
SduI GDGCHC 1 cut(s) 276
SetI ASST 7 cut(s) 84, 267, 276, 301, 377, 392, 415
SgeI CNNG 9 cut(s) 52, 57, 91, 174, 225, 242, 258, 377, 408
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 2 cut(s) 164, 398
Sse9I AATT 2 cut(s) 90, 220
SspMI CTAG 1 cut(s) 45
SstI GAGCTC 1 cut(s) 276
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 2 cut(s) 173, 330
TaqI TCGA 1 cut(s) 322
TasI AATT 2 cut(s) 90, 220
TatI WGTACW 1 cut(s) 338
TfiI GAWTC 2 cut(s) 156, 313
Tru1I TTAA 3 cut(s) 21, 147, 430
Tru9I TTAA 3 cut(s) 21, 147, 430
TseFI GTSAC 2 cut(s) 233, 260
Tsp45I GTSAC 2 cut(s) 233, 260
TspDTI ATGAA 1 cut(s) 303
VpaK11BI GGWCC 1 cut(s) 173
XspI CTAG 1 cut(s) 45
Zsp2I ATGCAT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.