FvH4_6g23371

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000147
Physical Location & Seq
Forward (+)
17398907 .. 17400019
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23371.t1

Sequence Viewer

Length: 933 bp
ATGACTAGCCAAGCTCTTACGGAGCTAATTTTCAAATTCCGCCCTATTTTTGTTTTTCTCTCGGAAACTAGGATGAAGGAAAAAAGTATCCAAAAAAAGAGAAAGGAGTGTAAGTTTGCTCATGGAATTTCTGTTGATCCTGTGAGAACTGGAGGAGGCTTAGCGTTGTGGTGGGATGATTGTGTGTCAGTCCAGATTCTGTCAAAATCTATTAACCTCATCGACACAATTGTTACTTTTAAAGCTGATGGCTCAAACATTAGAATGACCTGGTTTTATGGCCCTCCAAAAAATGAAAATAAGTTCAAAGGTCAACAATTCACCTGGAGCAACAATTGGCCAGATGGGGATTTGATCAAAATTCGACTAGATAGAAGTATTGTTAATAGTAATTGGCTCGAGAGATGGCGTGCTTCAAGTGTCTTTCACTTTCCCATCATTGGTTCAGACCACTGCCCACTAGTAATCAATACTGATCCATCAGTTGAGAAAGGCTCAAAGACTTTCAAATTTGAACCTAGTTGGATTGAAGACCCAAAATGCAATGAGTTAATCAATGAAGCGTGGTTAGACAACCTTGGGGGTAATTTTGCAAATCAATGGGCAACCAATCTTGATCATTGCAGCAAGGCTCTTGGGAGGTGGAGCAAAAAGTTCTCCAACCATAGAAGAAAAATCAATAGAAACATAGAAGAGTTGCAAAAGGCGCAAGCTAATTCCGACCCCGAAGCTCATGATCATGCAAGTAGCCTAACAAAAGAAATTGCCAGCCTTTGGGACAAGGAGGAGAAGTATTGGGCGCAGAGATCCCGCATAAAGTGGCTGAAAGCCGGTGATTCTAATTCAAGATTTTTTCACCTTACTACTATTCATAGAAGGCAGAGGAACAAAATGCTTAAATTGAAGAACAAGAATGACATTTGGCTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

311

Amino Acids

36.24

Weight (kDa)

9.57

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 774
AciI CCGC 2 cut(s) 40, 811
AclWI GGATC 3 cut(s) 131, 470, 801
AcoI YGGCCR 1 cut(s) 338
AcsI RAATTY 4 cut(s) 35, 126, 360, 509
AfiI CCNNNNNNNGG 2 cut(s) 440, 774
AgsI TTSAA 8 cut(s) 34, 307, 417, 508, 515, 530, 846, 904
AhlI ACTAGT 1 cut(s) 460
AjnI CCWGG 2 cut(s) 269, 323
AluBI AGCT 5 cut(s) 14, 25, 245, 713, 731
AluI AGCT 5 cut(s) 14, 25, 245, 713, 731
AlwI GGATC 3 cut(s) 131, 470, 801
AlwNI CAGNNNCTG 1 cut(s) 199
Ama87I CYCGRG 1 cut(s) 398
AoxI GGCC 2 cut(s) 280, 338
ApeKI GCWGC 1 cut(s) 624
ApoI RAATTY 4 cut(s) 35, 126, 360, 509
AspLEI GCGC 2 cut(s) 709, 802
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 3 cut(s) 313, 845, 848
AvaI CYCGRG 1 cut(s) 398
BalI TGGCCA 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 537
BbvI GCAGC 1 cut(s) 636
BccI CCATC 5 cut(s) 242, 338, 399, 443, 487
BciT130I CCWGG 2 cut(s) 271, 325
BciVI GTATCC 1 cut(s) 98
BclI TGATCA 3 cut(s) 354, 616, 736
BcuI ACTAGT 1 cut(s) 460
BfaI CTAG 6 cut(s) 6, 69, 368, 461, 519, 926
BfuI GTATCC 1 cut(s) 98
BisI GCNGC 1 cut(s) 625
BlpI GCTNAGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 626
Bme1390I CCNGG 2 cut(s) 271, 325
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 281
BmrFI CCNGG 2 cut(s) 271, 325
BpiI GAAGAC 1 cut(s) 537
BplI GAGNNNNNCTC 2 cut(s) 479, 511
BpmI CTGGAG 2 cut(s) 171, 346
Bpu1102I GCTNAGC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 577
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 776, 806
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 774
Bse118I RCCGGY 1 cut(s) 830
Bse1I ACTGG 1 cut(s) 154
Bse3DI GCAATG 2 cut(s) 550, 619
BseBI CCWGG 2 cut(s) 271, 325
BseDI CCNNGG 1 cut(s) 577
BseGI GGATG 2 cut(s) 78, 181
BseLI CCNNNNNNNGG 2 cut(s) 440, 774
BseMI GCAATG 2 cut(s) 550, 619
BseNI ACTGG 1 cut(s) 154
BseRI GAGGAG 2 cut(s) 168, 800
BseXI GCAGC 1 cut(s) 636
BshFI GGCC 2 cut(s) 282, 340
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 1 cut(s) 831
BslFI GGGAC 1 cut(s) 791
BslI CCNNNNNNNGG 2 cut(s) 440, 774
BsmFI GGGAC 1 cut(s) 791
BsnI GGCC 2 cut(s) 282, 340
BsoBI CYCGRG 1 cut(s) 398
Bsp143I GATC 6 cut(s) 136, 354, 475, 616, 736, 806
Bsp1720I GCTNAGC 1 cut(s) 160
BspACI CCGC 2 cut(s) 40, 811
BspANI GGCC 2 cut(s) 282, 340
BspHI TCATGA 1 cut(s) 733
BspPI GGATC 3 cut(s) 131, 470, 801
BsrDI GCAATG 2 cut(s) 550, 619
BsrFI RCCGGY 1 cut(s) 830
BsrI ACTGG 1 cut(s) 154
BssAI RCCGGY 1 cut(s) 830
BssECI CCNNGG 1 cut(s) 577
BssMI GATC 6 cut(s) 136, 354, 475, 616, 736, 806
BssT1I CCWWGG 1 cut(s) 577
Bst2UI CCWGG 2 cut(s) 271, 325
Bst6I CTCTTC 1 cut(s) 687
BstC8I GCNNGC 3 cut(s) 411, 711, 769
BstDEI CTNAG 1 cut(s) 160
BstF5I GGATG 2 cut(s) 78, 181
BstHHI GCGC 2 cut(s) 709, 802
BstKTI GATC 6 cut(s) 139, 357, 478, 619, 739, 809
BstMBI GATC 6 cut(s) 136, 354, 475, 616, 736, 806
BstMWI GCNNNNNNNGC 1 cut(s) 706
BstNI CCWGG 2 cut(s) 271, 325
BstSCI CCNGG 2 cut(s) 269, 323
BstV1I GCAGC 1 cut(s) 636
BstV2I GAAGAC 1 cut(s) 537
BstX2I RGATCY 1 cut(s) 806
BstYI RGATCY 1 cut(s) 806
BsuI GTATCC 1 cut(s) 98
BsuRI GGCC 2 cut(s) 282, 340
BtsCI GGATG 2 cut(s) 78, 181
BtsI GCAGTG 1 cut(s) 451
BtsIMutI CAGTG 1 cut(s) 451
Cac8I GCNNGC 3 cut(s) 411, 711, 769
CaiI CAGNNNCTG 1 cut(s) 199
CciI TCATGA 1 cut(s) 733
CfoI GCGC 2 cut(s) 709, 802
Cfr10I RCCGGY 1 cut(s) 830
Cfr13I GGNCC 1 cut(s) 281
CsiI ACCWGGT 1 cut(s) 269
CviAII CATG 3 cut(s) 122, 734, 740
DdeI CTNAG 1 cut(s) 160
DpnI GATC 6 cut(s) 138, 356, 477, 618, 738, 808
DpnII GATC 6 cut(s) 136, 354, 475, 616, 736, 806
DraI TTTAAA 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 338
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
EciI GGCGGA 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 577
Eco88I CYCGRG 1 cut(s) 398
EcoRII CCWGG 2 cut(s) 269, 323
EcoT14I CCWWGG 1 cut(s) 577
ErhI CCWWGG 1 cut(s) 577
FaeI CATG 3 cut(s) 125, 737, 743
FaiI YATR 8 cut(s) 123, 279, 666, 689, 735, 741, 815, 873
FaqI GGGAC 1 cut(s) 791
FatI CATG 3 cut(s) 121, 733, 739
FauI CCCGC 1 cut(s) 818
FbaI TGATCA 3 cut(s) 354, 616, 736
Fnu4HI GCNGC 1 cut(s) 625
FokI GGATG 2 cut(s) 85, 188
Fsp4HI GCNGC 1 cut(s) 625
FspBI CTAG 6 cut(s) 6, 69, 368, 461, 519, 926
GlaI GCGC 2 cut(s) 708, 801
GluI GCNGC 1 cut(s) 625
GsuI CTGGAG 2 cut(s) 171, 346
HaeIII GGCC 2 cut(s) 282, 340
HapII CCGG 1 cut(s) 831
HhaI GCGC 2 cut(s) 709, 802
Hin1II CATG 3 cut(s) 125, 737, 743
Hin6I GCGC 2 cut(s) 707, 800
HinP1I GCGC 2 cut(s) 707, 800
HincII GTYRAC 1 cut(s) 314
HindII GTYRAC 1 cut(s) 314
HinfI GANTC 2 cut(s) 196, 836
HpaII CCGG 1 cut(s) 831
HphI GGTGA 3 cut(s) 313, 845, 848
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 3 cut(s) 64, 448, 721
Hpy188III TCNNGA 5 cut(s) 193, 400, 614, 734, 846
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 2 cut(s) 70, 870
HpyCH4V TGCA 5 cut(s) 543, 593, 624, 700, 743
HpyF10VI GCNNNNNNNGC 1 cut(s) 706
HpyF3I CTNAG 1 cut(s) 160
Hsp92II CATG 3 cut(s) 125, 737, 743
HspAI GCGC 2 cut(s) 707, 800
Ksp22I TGATCA 3 cut(s) 354, 616, 736
Kzo9I GATC 6 cut(s) 136, 354, 475, 616, 736, 806
LmnI GCTCC 3 cut(s) 22, 327, 645
Lsp1109I GCAGC 1 cut(s) 636
MabI ACCWGGT 1 cut(s) 269
MaeI CTAG 6 cut(s) 6, 69, 368, 461, 519, 926
MaeIII GTNAC 1 cut(s) 232
MalI GATC 6 cut(s) 138, 356, 477, 618, 738, 808
MboI GATC 6 cut(s) 136, 354, 475, 616, 736, 806
MboII GAAGA 4 cut(s) 542, 681, 704, 916
MfeI CAATTG 2 cut(s) 228, 334
MflI RGATCY 1 cut(s) 806
MlsI TGGCCA 1 cut(s) 340
MluNI TGGCCA 1 cut(s) 340
MmeI TCCRAC 3 cut(s) 503, 684, 744
MnlI CCTC 7 cut(s) 146, 149, 227, 294, 633, 778, 876
Mox20I TGGCCA 1 cut(s) 340
MscI TGGCCA 1 cut(s) 340
MseI TTAA 5 cut(s) 213, 240, 384, 551, 897
MslI CAYNNNNRTG 2 cut(s) 263, 738
Msp20I TGGCCA 1 cut(s) 340
MspI CCGG 1 cut(s) 831
MspR9I CCNGG 2 cut(s) 271, 325
MunI CAATTG 2 cut(s) 228, 334
MvaI CCWGG 2 cut(s) 271, 325
MwoI GCNNNNNNNGC 1 cut(s) 706
NdeII GATC 6 cut(s) 136, 354, 475, 616, 736, 806
NlaIII CATG 3 cut(s) 125, 737, 743
PaeR7I CTCGAG 1 cut(s) 398
PagI TCATGA 1 cut(s) 733
PfeI GAWTC 2 cut(s) 196, 836
PflMI CCANNNNNTGG 1 cut(s) 774
PkrI GCNGC 1 cut(s) 626
Psp6I CCWGG 2 cut(s) 269, 323
PspGI CCWGG 2 cut(s) 269, 323
PspPI GGNCC 1 cut(s) 281
PstNI CAGNNNCTG 1 cut(s) 199
PsuI RGATCY 1 cut(s) 806
RseI CAYNNNNRTG 2 cut(s) 263, 738
SaqAI TTAA 5 cut(s) 213, 240, 384, 551, 897
SatI GCNGC 1 cut(s) 625
Sau3AI GATC 6 cut(s) 136, 354, 475, 616, 736, 806
Sau96I GGNCC 1 cut(s) 281
ScrFI CCNGG 2 cut(s) 271, 325
SexAI ACCWGGT 1 cut(s) 269
Sfr274I CTCGAG 1 cut(s) 398
SlaI CTCGAG 1 cut(s) 398
SmiMI CAYNNNNRTG 2 cut(s) 263, 738
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SpeI ACTAGT 1 cut(s) 460
SsiI CCGC 2 cut(s) 40, 811
SspMI CTAG 6 cut(s) 6, 69, 368, 461, 519, 926
StyD4I CCNGG 2 cut(s) 269, 323
StyI CCWWGG 1 cut(s) 577
TaqI TCGA 3 cut(s) 222, 364, 399
TfiI GAWTC 2 cut(s) 196, 836
Tru1I TTAA 5 cut(s) 213, 240, 384, 551, 897
Tru9I TTAA 5 cut(s) 213, 240, 384, 551, 897
TscAI CASTG 1 cut(s) 458
TseI GCWGC 1 cut(s) 624
TspDTI ATGAA 4 cut(s) 89, 309, 573, 860
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 1 cut(s) 458
Van91I CCANNNNNTGG 1 cut(s) 774
XapI RAATTY 4 cut(s) 35, 126, 360, 509
XhoI CTCGAG 1 cut(s) 398
XspI CTAG 6 cut(s) 6, 69, 368, 461, 519, 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.