ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 4 - 214 | 2.2e-15 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 165 |
| AclWI | GGATC | 1 cut(s) | 85 |
| AcoI | YGGCCR | 1 cut(s) | 532 |
| AcsI | RAATTY | 2 cut(s) | 390, 506 |
| AcuI | CTGAAG | 2 cut(s) | 140, 276 |
| AfaI | GTAC | 2 cut(s) | 195, 335 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 257, 629 |
| AflIII | ACRYGT | 1 cut(s) | 110 |
| AgsI | TTSAA | 2 cut(s) | 61, 496 |
| AjiI | CACGTC | 1 cut(s) | 113 |
| AjnI | CCWGG | 3 cut(s) | 93, 362, 581 |
| AluBI | AGCT | 3 cut(s) | 56, 67, 317 |
| AluI | AGCT | 3 cut(s) | 56, 67, 317 |
| Alw21I | GWGCWC | 1 cut(s) | 590 |
| Alw26I | GTCTC | 2 cut(s) | 101, 414 |
| AlwI | GGATC | 1 cut(s) | 85 |
| AoxI | GGCC | 2 cut(s) | 532, 579 |
| ApoI | RAATTY | 2 cut(s) | 390, 506 |
| AspS9I | GGNCC | 1 cut(s) | 36 |
| AvaII | GGWCC | 1 cut(s) | 36 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 225, 258 |
| BauI | CACGAG | 1 cut(s) | 455 |
| BbsI | GAAGAC | 1 cut(s) | 478 |
| Bbv12I | GWGCWC | 1 cut(s) | 590 |
| BceAI | ACGGC | 1 cut(s) | 519 |
| BciT130I | CCWGG | 3 cut(s) | 95, 364, 583 |
| BclI | TGATCA | 1 cut(s) | 592 |
| BcoDI | GTCTC | 2 cut(s) | 101, 414 |
| BfmI | CTRYAG | 1 cut(s) | 70 |
| Bme1390I | CCNGG | 3 cut(s) | 95, 364, 583 |
| Bme18I | GGWCC | 1 cut(s) | 36 |
| BmgBI | CACGTC | 1 cut(s) | 113 |
| BmgT120I | GGNCC | 1 cut(s) | 36 |
| BmiI | GGNNCC | 1 cut(s) | 37 |
| BmrFI | CCNGG | 3 cut(s) | 95, 364, 583 |
| BmrI | ACTGGG | 1 cut(s) | 664 |
| BmuI | ACTGGG | 1 cut(s) | 664 |
| BoxI | GACNNNNGTC | 1 cut(s) | 34 |
| BpiI | GAAGAC | 1 cut(s) | 478 |
| BpmI | CTGGAG | 1 cut(s) | 180 |
| BsaJI | CCNNGG | 1 cut(s) | 362 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 257, 629 |
| Bse1I | ACTGG | 2 cut(s) | 163, 670 |
| BseBI | CCWGG | 3 cut(s) | 95, 364, 583 |
| BseDI | CCNNGG | 1 cut(s) | 362 |
| BseGI | GGATG | 2 cut(s) | 288, 665 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 257, 629 |
| BseMII | CTCAG | 1 cut(s) | 78 |
| BseNI | ACTGG | 2 cut(s) | 163, 670 |
| BseRI | GAGGAG | 1 cut(s) | 432 |
| BshFI | GGCC | 2 cut(s) | 534, 581 |
| BsiHKAI | GWGCWC | 1 cut(s) | 590 |
| BslFI | GGGAC | 1 cut(s) | 42 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 257, 629 |
| BsmAI | GTCTC | 2 cut(s) | 101, 414 |
| BsmFI | GGGAC | 1 cut(s) | 42 |
| BsnI | GGCC | 2 cut(s) | 534, 581 |
| Bsp1286I | GDGCHC | 1 cut(s) | 590 |
| Bsp1407I | TGTACA | 1 cut(s) | 193 |
| Bsp143I | GATC | 4 cut(s) | 90, 484, 559, 592 |
| BspACI | CCGC | 1 cut(s) | 165 |
| BspANI | GGCC | 2 cut(s) | 534, 581 |
| BspCNI | CTCAG | 1 cut(s) | 79 |
| BspLI | GGNNCC | 1 cut(s) | 37 |
| BspMAI | CTGCAG | 1 cut(s) | 74 |
| BspPI | GGATC | 1 cut(s) | 85 |
| BsrGI | TGTACA | 1 cut(s) | 193 |
| BsrI | ACTGG | 2 cut(s) | 163, 670 |
| BssECI | CCNNGG | 1 cut(s) | 362 |
| BssMI | GATC | 4 cut(s) | 90, 484, 559, 592 |
| BssSI | CACGAG | 1 cut(s) | 455 |
| Bst2BI | CACGAG | 1 cut(s) | 455 |
| Bst2UI | CCWGG | 3 cut(s) | 95, 364, 583 |
| Bst4CI | ACNGT | 4 cut(s) | 23, 205, 241, 425 |
| BstAUI | TGTACA | 1 cut(s) | 193 |
| BstDEI | CTNAG | 2 cut(s) | 87, 624 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 255 |
| BstF5I | GGATG | 2 cut(s) | 288, 665 |
| BstKTI | GATC | 4 cut(s) | 93, 487, 562, 595 |
| BstMAI | GTCTC | 2 cut(s) | 101, 414 |
| BstMBI | GATC | 4 cut(s) | 90, 484, 559, 592 |
| BstNI | CCWGG | 3 cut(s) | 95, 364, 583 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 34 |
| BstSCI | CCNGG | 3 cut(s) | 93, 362, 581 |
| BstSFI | CTRYAG | 1 cut(s) | 70 |
| BstV2I | GAAGAC | 1 cut(s) | 478 |
| BstX2I | RGATCY | 1 cut(s) | 90 |
| BstYI | RGATCY | 1 cut(s) | 90 |
| BsuRI | GGCC | 2 cut(s) | 534, 581 |
| BtrI | CACGTC | 1 cut(s) | 113 |
| BtsCI | GGATG | 2 cut(s) | 288, 665 |
| Cfr13I | GGNCC | 1 cut(s) | 36 |
| Csp6I | GTAC | 2 cut(s) | 194, 334 |
| CviAII | CATG | 3 cut(s) | 279, 299, 530 |
| CviJI | RGCY | 6 cut(s) | 56, 67, 173, 317, 534, 581 |
| CviKI_1 | RGCY | 6 cut(s) | 56, 67, 173, 317, 534, 581 |
| CviQI | GTAC | 2 cut(s) | 194, 334 |
| DdeI | CTNAG | 2 cut(s) | 87, 624 |
| DpnI | GATC | 4 cut(s) | 92, 486, 561, 594 |
| DpnII | GATC | 4 cut(s) | 90, 484, 559, 592 |
| EaeI | YGGCCR | 1 cut(s) | 532 |
| Eco47I | GGWCC | 1 cut(s) | 36 |
| Eco57I | CTGAAG | 2 cut(s) | 140, 276 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 255 |
| EcoO109I | RGGNCCY | 1 cut(s) | 36 |
| EcoRII | CCWGG | 3 cut(s) | 93, 362, 581 |
| FaeI | CATG | 3 cut(s) | 282, 302, 533 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 540, 572 |
| FaqI | GGGAC | 1 cut(s) | 42 |
| FatI | CATG | 3 cut(s) | 278, 298, 529 |
| FauI | CCCGC | 1 cut(s) | 158 |
| FbaI | TGATCA | 1 cut(s) | 592 |
| FokI | GGATG | 2 cut(s) | 295, 652 |
| GsuI | CTGGAG | 1 cut(s) | 180 |
| HaeIII | GGCC | 2 cut(s) | 534, 581 |
| Hin1II | CATG | 3 cut(s) | 282, 302, 533 |
| HincII | GTYRAC | 2 cut(s) | 116, 145 |
| HindII | GTYRAC | 2 cut(s) | 116, 145 |
| HindIII | AAGCTT | 1 cut(s) | 54 |
| HinfI | GANTC | 5 cut(s) | 151, 188, 212, 217, 349 |
| Hpy166II | GTNNAC | 2 cut(s) | 116, 145 |
| Hpy188I | TCNGA | 5 cut(s) | 130, 256, 406, 592, 637 |
| Hpy188III | TCNNGA | 1 cut(s) | 86 |
| Hpy8I | GTNNAC | 2 cut(s) | 116, 145 |
| HpyAV | CCTTC | 3 cut(s) | 251, 261, 438 |
| HpyCH4III | ACNGT | 4 cut(s) | 23, 205, 241, 425 |
| HpyCH4IV | ACGT | 1 cut(s) | 112 |
| HpyCH4V | TGCA | 2 cut(s) | 72, 270 |
| HpyF3I | CTNAG | 2 cut(s) | 87, 624 |
| HpySE526I | ACGT | 1 cut(s) | 112 |
| Hsp92II | CATG | 3 cut(s) | 282, 302, 533 |
| Ksp22I | TGATCA | 1 cut(s) | 592 |
| Kzo9I | GATC | 4 cut(s) | 90, 484, 559, 592 |
| MaeII | ACGT | 1 cut(s) | 112 |
| MaeIII | GTNAC | 1 cut(s) | 199 |
| MalI | GATC | 4 cut(s) | 92, 486, 561, 594 |
| MboI | GATC | 4 cut(s) | 90, 484, 559, 592 |
| MboII | GAAGA | 3 cut(s) | 73, 479, 483 |
| MflI | RGATCY | 1 cut(s) | 90 |
| MhlI | GDGCHC | 1 cut(s) | 590 |
| MluCI | AATT | 3 cut(s) | 390, 446, 506 |
| MlyI | GAGTC | 2 cut(s) | 206, 211 |
| MnlI | CCTC | 3 cut(s) | 49, 155, 410 |
| MseI | TTAA | 2 cut(s) | 384, 443 |
| MslI | CAYNNNNRTG | 4 cut(s) | 303, 495, 534, 670 |
| MspR9I | CCNGG | 3 cut(s) | 95, 364, 583 |
| MvaI | CCWGG | 3 cut(s) | 95, 364, 583 |
| NdeII | GATC | 4 cut(s) | 90, 484, 559, 592 |
| NlaIII | CATG | 3 cut(s) | 282, 302, 533 |
| NlaIV | GGNNCC | 1 cut(s) | 37 |
| NmuCI | GTSAC | 1 cut(s) | 199 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 532 |
| PfeI | GAWTC | 3 cut(s) | 151, 188, 349 |
| PleI | GAGTC | 2 cut(s) | 206, 211 |
| PpsI | GAGTC | 2 cut(s) | 206, 211 |
| PpuMI | RGGWCCY | 1 cut(s) | 36 |
| PshAI | GACNNNNGTC | 1 cut(s) | 34 |
| Psp5II | RGGWCCY | 1 cut(s) | 36 |
| Psp6I | CCWGG | 3 cut(s) | 93, 362, 581 |
| PspGI | CCWGG | 3 cut(s) | 93, 362, 581 |
| PspN4I | GGNNCC | 1 cut(s) | 37 |
| PspPI | GGNCC | 1 cut(s) | 36 |
| PspPPI | RGGWCCY | 1 cut(s) | 36 |
| PstI | CTGCAG | 1 cut(s) | 74 |
| PsuI | RGATCY | 1 cut(s) | 90 |
| RsaI | GTAC | 2 cut(s) | 195, 335 |
| RsaNI | GTAC | 2 cut(s) | 194, 334 |
| RseI | CAYNNNNRTG | 4 cut(s) | 303, 495, 534, 670 |
| SaqAI | TTAA | 2 cut(s) | 384, 443 |
| Sau3AI | GATC | 4 cut(s) | 90, 484, 559, 592 |
| Sau96I | GGNCC | 1 cut(s) | 36 |
| SchI | GAGTC | 2 cut(s) | 206, 211 |
| ScrFI | CCNGG | 3 cut(s) | 95, 364, 583 |
| SduI | GDGCHC | 1 cut(s) | 590 |
| SetI | ASST | 9 cut(s) | 52, 58, 69, 115, 201, 262, 315, 319, 625 |
| SfcI | CTRYAG | 1 cut(s) | 70 |
| SinI | GGWCC | 1 cut(s) | 36 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 303, 495, 534, 670 |
| Sse9I | AATT | 3 cut(s) | 390, 446, 506 |
| SsiI | CCGC | 1 cut(s) | 165 |
| StyD4I | CCNGG | 3 cut(s) | 93, 362, 581 |
| TaaI | ACNGT | 4 cut(s) | 23, 205, 241, 425 |
| TaiI | ACGT | 1 cut(s) | 115 |
| TaqI | TCGA | 2 cut(s) | 215, 562 |
| TasI | AATT | 3 cut(s) | 390, 446, 506 |
| TatI | WGTACW | 1 cut(s) | 193 |
| TfiI | GAWTC | 3 cut(s) | 151, 188, 349 |
| Tru1I | TTAA | 2 cut(s) | 384, 443 |
| Tru9I | TTAA | 2 cut(s) | 384, 443 |
| TseFI | GTSAC | 1 cut(s) | 199 |
| Tsp45I | GTSAC | 1 cut(s) | 199 |
| TspDTI | ATGAA | 7 cut(s) | 143, 315, 321, 341, 402, 560, 605 |
| TspGWI | ACGGA | 1 cut(s) | 470 |
| VpaK11BI | GGWCC | 1 cut(s) | 36 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 255 |
| XapI | RAATTY | 2 cut(s) | 390, 506 |