Rroxscaffold_7G00194940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000147
Physical Location & Seq
Forward (+)
37032460 .. 37040257
7798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00194940.1

Sequence Viewer

Length: 675 bp
ATGACTCGGACTAGCCTGGTTCTTTGCTCTGTGGTGTTGGTTTGCACGGTGGTTCACCGAAAAGTAGAGATCGGAGCAGCTACGGTCGACGCAATCGGGACCCGGTCGGAAGTTCACTTTTCCGGCAACGTCTCGCCCGATCCTTCGTGGTTTTGGAATCTCCTCCTCCTCTTGATCACCCCTATATCCGCCTTGAGGGACGATTTTGTGTGTGGAGTGAAAGATCAAGGTTTGAAAATCAGCGCTGCACAACGAATGCGGGGTTCTATCAAATGGCGGCGATTGGCTGATCTTCAATTCGGATATGTATATCCGGAACCCATCAACGGCTTCTTCAAAAAAAAATTACCTGACCCGGGTGCTCTTCCCTCCGCAATTCTATGGTTTCATGGTTTTGGCTATGTGTCCACCATTGACGACTACAAAGTTATTATCGAGTTTGATGTCTCCGGGAAGAAGATAGTGAAGGCTATGGTCTTCTCATCCGAGCTAAGAGTTGGAAAACTATTGCACAGCACTGTGCTCCGGTGGTTGGGGGCGGGGTTTTCGTGCAGCAGGTCAAGATTTGGTAGTGATAATCTTGAAGAGGCTGCCGATCAAATCCCAATTCCGGATAGCTTTCGAGATGCAAACCCCGAGTCGCGAGCCCTCCATGATTCGACCGTGAATCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

24.81

Weight (kDa)

8.68

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 546
AccI GTMKAC 1 cut(s) 87
AccII CGCG 1 cut(s) 643
AccIII TCCGGA 2 cut(s) 313, 610
AciI CCGC 5 cut(s) 189, 259, 277, 372, 539
AclWI GGATC 1 cut(s) 134
AfeI AGCGCT 1 cut(s) 244
AfiI CCNNNNNNNGG 5 cut(s) 195, 326, 356, 532, 610
AgsI TTSAA 4 cut(s) 235, 296, 337, 584
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 3 cut(s) 80, 490, 618
AluI AGCT 3 cut(s) 80, 490, 618
Alw21I GWGCWC 2 cut(s) 364, 525
Alw26I GTCTC 2 cut(s) 136, 451
AlwI GGATC 1 cut(s) 134
Ama87I CYCGRG 2 cut(s) 355, 635
Aor13HI TCCGGA 2 cut(s) 313, 610
Aor51HI AGCGCT 1 cut(s) 244
ApeKI GCWGC 4 cut(s) 77, 245, 552, 590
ArsI GACNNNNNNTTYG 2 cut(s) 623, 655
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 99
AsuC2I CCSGG 4 cut(s) 103, 356, 357, 451
AsuHPI GGTGA 2 cut(s) 47, 169
AvaI CYCGRG 2 cut(s) 355, 635
AvaII GGWCC 1 cut(s) 99
BanII GRGCYC 1 cut(s) 649
BbsI GAAGAC 1 cut(s) 469
Bbv12I GWGCWC 2 cut(s) 364, 525
BbvI GCAGC 4 cut(s) 89, 232, 564, 577
BccI CCATC 1 cut(s) 329
BceAI ACGGC 1 cut(s) 343
BciT130I CCWGG 1 cut(s) 17
BclI TGATCA 1 cut(s) 174
BcnI CCSGG 4 cut(s) 103, 356, 357, 451
BcoDI GTCTC 2 cut(s) 136, 451
BfaI CTAG 2 cut(s) 12, 673
BfoI RGCGCY 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 546
BisI GCNGC 5 cut(s) 78, 246, 278, 553, 591
BlsI GCNGC 5 cut(s) 79, 247, 279, 554, 592
Bme1390I CCNGG 5 cut(s) 17, 103, 356, 357, 451
Bme18I GGWCC 1 cut(s) 99
BmeT110I CYCGRG 2 cut(s) 355, 635
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 3 cut(s) 100, 101, 318
BmrFI CCNGG 5 cut(s) 17, 103, 356, 357, 451
BmsI GCATC 1 cut(s) 616
BpiI GAAGAC 1 cut(s) 469
BpuEI CTTGAG 1 cut(s) 214
BpuMI CCSGG 4 cut(s) 103, 356, 357, 451
BsaJI CCNNGG 1 cut(s) 355
BsaWI WCCGGW 3 cut(s) 313, 525, 610
Bsc4I CCNNNNNNNGG 5 cut(s) 195, 326, 356, 532, 610
BseAI TCCGGA 2 cut(s) 313, 610
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 482
BseLI CCNNNNNNNGG 5 cut(s) 195, 326, 356, 532, 610
BseRI GAGGAG 3 cut(s) 152, 155, 158
BseXI GCAGC 4 cut(s) 89, 232, 564, 577
BsgI GTGCAG 2 cut(s) 231, 571
Bsh1236I CGCG 1 cut(s) 643
Bsh1285I CGRYCG 3 cut(s) 87, 107, 663
BsiEI CGRYCG 3 cut(s) 87, 107, 663
BsiHKAI GWGCWC 2 cut(s) 364, 525
BsiHKCI CYCGRG 2 cut(s) 355, 635
BsiSI CCGG 7 cut(s) 103, 123, 314, 356, 450, 526, 611
BslFI GGGAC 2 cut(s) 112, 212
BslI CCNNNNNNNGG 5 cut(s) 195, 326, 356, 532, 610
BsmAI GTCTC 2 cut(s) 136, 451
BsmBI CGTCTC 1 cut(s) 136
BsmFI GGGAC 2 cut(s) 112, 212
BsmI GAATGC 1 cut(s) 261
BsoBI CYCGRG 2 cut(s) 355, 635
Bsp1286I GDGCHC 3 cut(s) 364, 525, 649
Bsp13I TCCGGA 2 cut(s) 313, 610
Bsp143I GATC 6 cut(s) 69, 139, 174, 223, 289, 595
Bsp68I TCGCGA 1 cut(s) 643
BspACI CCGC 5 cut(s) 189, 259, 277, 372, 539
BspEI TCCGGA 2 cut(s) 313, 610
BspFNI CGCG 1 cut(s) 643
BspLI GGNNCC 3 cut(s) 100, 101, 318
BspMI ACCTGC 1 cut(s) 546
BspPI GGATC 1 cut(s) 134
BspQI GCTCTTC 1 cut(s) 369
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 6 cut(s) 69, 139, 174, 223, 289, 595
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 4 cut(s) 49, 85, 520, 664
Bst6I CTCTTC 2 cut(s) 369, 579
BstC8I GCNNGC 1 cut(s) 645
BstDEI CTNAG 1 cut(s) 491
BstF5I GGATG 1 cut(s) 482
BstFNI CGCG 1 cut(s) 643
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 6 cut(s) 72, 142, 177, 226, 292, 598
BstMAI GTCTC 2 cut(s) 136, 451
BstMBI GATC 6 cut(s) 69, 139, 174, 223, 289, 595
BstMCI CGRYCG 3 cut(s) 87, 107, 663
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 5 cut(s) 15, 101, 354, 355, 449
BstUI CGCG 1 cut(s) 643
BstV1I GCAGC 4 cut(s) 89, 232, 564, 577
BstV2I GAAGAC 1 cut(s) 469
BtsCI GGATG 1 cut(s) 482
BtsIMutI CAGTG 1 cut(s) 516
BtuMI TCGCGA 1 cut(s) 643
BveI ACCTGC 1 cut(s) 546
Cac8I GCNNGC 1 cut(s) 645
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 99
Cfr9I CCCGGG 1 cut(s) 355
CseI GACGC 1 cut(s) 98
CviAII CATG 2 cut(s) 389, 653
DdeI CTNAG 1 cut(s) 491
DpnI GATC 6 cut(s) 71, 141, 176, 225, 291, 597
DpnII GATC 6 cut(s) 69, 139, 174, 223, 289, 595
Eam1104I CTCTTC 2 cut(s) 369, 579
EarI CTCTTC 2 cut(s) 369, 579
EciI GGCGGA 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 99
Eco47III AGCGCT 1 cut(s) 244
Eco88I CYCGRG 2 cut(s) 355, 635
EcoO109I RGGNCCY 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 649
Esp3I CGTCTC 1 cut(s) 136
FaeI CATG 2 cut(s) 392, 656
FaiI YATR 8 cut(s) 185, 306, 310, 382, 390, 402, 473, 654
FaqI GGGAC 2 cut(s) 112, 212
FatI CATG 2 cut(s) 388, 652
FauI CCCGC 2 cut(s) 252, 532
FbaI TGATCA 1 cut(s) 174
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 5 cut(s) 78, 246, 278, 553, 591
FokI GGATG 1 cut(s) 469
FriOI GRGCYC 1 cut(s) 649
Fsp4HI GCNGC 5 cut(s) 78, 246, 278, 553, 591
FspBI CTAG 2 cut(s) 12, 673
GlaI GCGC 1 cut(s) 244
GluI GCNGC 5 cut(s) 78, 246, 278, 553, 591
HaeII RGCGCY 1 cut(s) 246
HapII CCGG 7 cut(s) 103, 123, 314, 356, 450, 526, 611
HgaI GACGC 1 cut(s) 98
HhaI GCGC 1 cut(s) 245
Hin1II CATG 2 cut(s) 392, 656
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 5 cut(s) 4, 157, 638, 656, 667
HpaII CCGG 7 cut(s) 103, 123, 314, 356, 450, 526, 611
HphI GGTGA 2 cut(s) 47, 169
Hpy166II GTNNAC 4 cut(s) 55, 88, 115, 408
Hpy188I TCNGA 5 cut(s) 9, 74, 109, 302, 487
Hpy188III TCNNGA 8 cut(s) 97, 172, 314, 561, 581, 611, 623, 642
Hpy8I GTNNAC 4 cut(s) 55, 88, 115, 408
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 153, 460
HpyCH4III ACNGT 4 cut(s) 49, 85, 520, 664
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 5 cut(s) 45, 248, 511, 552, 629
HpyF3I CTNAG 1 cut(s) 491
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 2 cut(s) 392, 656
HspAI GCGC 1 cut(s) 243
KflI GGGWCCC 1 cut(s) 99
Kpn2I TCCGGA 2 cut(s) 313, 610
Ksp22I TGATCA 1 cut(s) 174
Kzo9I GATC 6 cut(s) 69, 139, 174, 223, 289, 595
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 2 cut(s) 74, 528
Lsp1109I GCAGC 4 cut(s) 89, 232, 564, 577
LweI GCATC 1 cut(s) 616
MaeI CTAG 2 cut(s) 12, 673
MaeII ACGT 1 cut(s) 129
MalI GATC 6 cut(s) 71, 141, 176, 225, 291, 597
MboI GATC 6 cut(s) 69, 139, 174, 223, 289, 595
MboII GAAGA 7 cut(s) 284, 325, 356, 466, 469, 469, 596
MhlI GDGCHC 3 cut(s) 364, 525, 649
MluCI AATT 4 cut(s) 296, 344, 375, 606
MlyI GAGTC 1 cut(s) 647
MmeI TCCRAC 2 cut(s) 87, 478
MnlI CCTC 7 cut(s) 173, 176, 179, 189, 379, 580, 659
MroI TCCGGA 2 cut(s) 313, 610
MspI CCGG 7 cut(s) 103, 123, 314, 356, 450, 526, 611
MspR9I CCNGG 5 cut(s) 17, 103, 356, 357, 451
Mva1269I GAATGC 1 cut(s) 261
MvaI CCWGG 1 cut(s) 17
MvnI CGCG 1 cut(s) 643
NciI CCSGG 4 cut(s) 103, 356, 357, 451
NdeII GATC 6 cut(s) 69, 139, 174, 223, 289, 595
NlaIII CATG 2 cut(s) 392, 656
NlaIV GGNNCC 3 cut(s) 100, 101, 318
NruI TCGCGA 1 cut(s) 643
PciSI GCTCTTC 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PctI GAATGC 1 cut(s) 261
PfeI GAWTC 3 cut(s) 157, 656, 667
PflFI GACNNNGTC 1 cut(s) 103
PfoI TCCNGGA 1 cut(s) 449
PkrI GCNGC 5 cut(s) 79, 247, 279, 554, 592
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
PpuMI RGGWCCY 1 cut(s) 99
Psp5II RGGWCCY 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 3 cut(s) 100, 101, 318
PspPI GGNCC 1 cut(s) 99
PspPPI RGGWCCY 1 cut(s) 99
PsyI GACNNNGTC 1 cut(s) 103
RruI TCGCGA 1 cut(s) 643
SalI GTCGAC 1 cut(s) 86
SapI GCTCTTC 1 cut(s) 369
SatI GCNGC 5 cut(s) 78, 246, 278, 553, 591
Sau3AI GATC 6 cut(s) 69, 139, 174, 223, 289, 595
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 5 cut(s) 17, 103, 356, 357, 451
SduI GDGCHC 3 cut(s) 364, 525, 649
SetI ASST 7 cut(s) 82, 132, 232, 352, 492, 560, 620
SfaNI GCATC 1 cut(s) 616
SinI GGWCC 1 cut(s) 99
SmaI CCCGGG 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 4 cut(s) 296, 344, 375, 606
SsiI CCGC 5 cut(s) 189, 259, 277, 372, 539
SspMI CTAG 2 cut(s) 12, 673
StyD4I CCNGG 5 cut(s) 15, 101, 354, 355, 449
TaaI ACNGT 4 cut(s) 49, 85, 520, 664
TaiI ACGT 1 cut(s) 132
TaqI TCGA 4 cut(s) 87, 435, 622, 659
TasI AATT 4 cut(s) 296, 344, 375, 606
TauI GCSGC 1 cut(s) 280
TfiI GAWTC 3 cut(s) 157, 656, 667
TscAI CASTG 1 cut(s) 523
TseI GCWGC 4 cut(s) 77, 245, 552, 590
TspDTI ATGAA 1 cut(s) 377
TspMI CCCGGG 1 cut(s) 355
TspRI CASTG 1 cut(s) 523
Tth111I GACNNNGTC 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 99
XmaI CCCGGG 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 2 cut(s) 12, 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.