Rmu_sc0003832.1_g000022

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003832.1
OG0000147
Physical Location & Seq
Reverse (-)
123530 .. 124348
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003832.1_g000022.1.cds

Sequence Viewer

Length: 819 bp
atgatacaactatcatggaactgtcatggcttgggacggcctatgacatccaaagcgctcaaagagctaattttgcaacaccgtccctctatcgtctttctctcggaaactagaatgaaagatgatagaatttcggaaataagaagacactgcaattttcctcatggagtgtctgtaaagcctttcaaaacgggtggtggccttgctttgtggtgggataatactgtcagggtgcaggtcctgttcaaatccaagaatctcattgatacggtggtgggcctccctgatggctctcacattcgcatctcttggttctatggacctccaaacaatcaattcaaagcctctttttggaacaacctcaataaccttgcaggttctattgatctgccctggctttgtgcgggggacttcaatgagttcctttggccgcatgagaaggaagggggaaacccctggaatcctggaaagagacgatttcttcgtcagtttatggatgcaaatgagctcatcgatgttcagttcaaaggtcaaaagttcacttggtccaataattggccagatggaggccttatcaagattcggctggatagaggagttgttgacacaaaatggcttgagagatggccagagacaagtgtctttcattctcctagattgggaagtgaccactgtgctattgttattgattctgatcctcctgctacgaggggcccaaagccttttaaatttgagccattttgggctgatgaggaggactgctttgaggtggttaaatctgcttggtccagcctatgtgtaggcccttttggtaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

272

Amino Acids

31.22

Weight (kDa)

8.51

Isoelectric Point (pI)

31.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 226, 365
AccB7I CCANNNNNTGG 1 cut(s) 555
AciI CCGC 2 cut(s) 404, 431
AclWI GGATC 1 cut(s) 689
AcoI YGGCCR 3 cut(s) 428, 557, 626
AcsI RAATTY 2 cut(s) 129, 728
AfeI AGCGCT 1 cut(s) 57
AfiI CCNNNNNNNGG 4 cut(s) 351, 555, 566, 659
AgsI TTSAA 5 cut(s) 187, 247, 340, 415, 526
AjnI CCWGG 3 cut(s) 392, 455, 463
AluBI AGCT 2 cut(s) 67, 508
AluI AGCT 2 cut(s) 67, 508
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 2 cut(s) 466, 626
AlwI GGATC 1 cut(s) 689
AlwNI CAGNNNCTG 1 cut(s) 241
Aor51HI AGCGCT 1 cut(s) 57
AoxI GGCC 9 cut(s) 38, 199, 277, 428, 557, 568, 626, 712, 802
ApaI GGGCCC 1 cut(s) 716
ApoI RAATTY 2 cut(s) 129, 728
ArsI GACNNNNNNTTYG 2 cut(s) 465, 497
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 8 cut(s) 238, 277, 320, 546, 712, 713, 786, 803
AvaII GGWCC 4 cut(s) 238, 320, 546, 786
BaeGI GKGCMC 1 cut(s) 716
BaeI ACNNNNGTAYC 2 cut(s) 258, 291
BalI TGGCCA 2 cut(s) 559, 628
BanII GRGCYC 2 cut(s) 510, 716
BbsI GAAGAC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 510
BccI CCATC 3 cut(s) 281, 557, 618
BceAI ACGGC 1 cut(s) 53
BciT130I CCWGG 3 cut(s) 394, 457, 465
BcoDI GTCTC 2 cut(s) 466, 626
BfaI CTAG 2 cut(s) 111, 654
BfoI RGCGCY 1 cut(s) 59
BfuAI ACCTGC 2 cut(s) 226, 365
BisI GCNGC 1 cut(s) 431
BlsI GCNGC 1 cut(s) 432
Bme1390I CCNGG 3 cut(s) 394, 457, 465
Bme18I GGWCC 4 cut(s) 238, 320, 546, 786
BmgT120I GGNCC 8 cut(s) 238, 277, 320, 546, 712, 713, 786, 803
BmiI GGNNCC 2 cut(s) 713, 714
BmrFI CCNGG 3 cut(s) 394, 457, 465
BmsI GCATC 2 cut(s) 312, 487
BoxI GACNNNNGTC 1 cut(s) 638
BpiI GAAGAC 1 cut(s) 151
BpuEI CTTGAG 1 cut(s) 638
Bsa29I ATCGAT 1 cut(s) 513
BsaBI GATNNNNATC 1 cut(s) 693
BsaJI CCNNGG 2 cut(s) 392, 455
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 4 cut(s) 351, 555, 566, 659
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 3 cut(s) 394, 457, 465
BseCI ATCGAT 1 cut(s) 513
BseDI CCNNGG 2 cut(s) 392, 455
BseGI GGATG 2 cut(s) 47, 502
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 4 cut(s) 351, 555, 566, 659
BseRI GAGGAG 2 cut(s) 609, 767
BseSI GKGCMC 1 cut(s) 716
BsgI GTGCAG 1 cut(s) 254
BshFI GGCC 9 cut(s) 40, 201, 279, 430, 559, 570, 628, 714, 804
BshVI ATCGAT 1 cut(s) 513
BsiHKAI GWGCWC 1 cut(s) 510
BslFI GGGAC 3 cut(s) 48, 69, 422
BslI CCNNNNNNNGG 4 cut(s) 351, 555, 566, 659
BsmAI GTCTC 2 cut(s) 466, 626
BsmBI CGTCTC 1 cut(s) 466
BsmFI GGGAC 3 cut(s) 48, 69, 422
BsnI GGCC 9 cut(s) 40, 201, 279, 430, 559, 570, 628, 714, 804
Bsp120I GGGCCC 1 cut(s) 712
Bsp1286I GDGCHC 2 cut(s) 510, 716
Bsp143I GATC 2 cut(s) 385, 694
BspACI CCGC 2 cut(s) 404, 431
BspANI GGCC 9 cut(s) 40, 201, 279, 430, 559, 570, 628, 714, 804
BspDI ATCGAT 1 cut(s) 513
BspLI GGNNCC 2 cut(s) 713, 714
BspMI ACCTGC 2 cut(s) 226, 365
BspPI GGATC 1 cut(s) 689
BssECI CCNNGG 2 cut(s) 392, 455
BssMI GATC 2 cut(s) 385, 694
Bst2UI CCWGG 3 cut(s) 394, 457, 465
Bst4CI ACNGT 5 cut(s) 23, 83, 226, 271, 674
BstF5I GGATG 2 cut(s) 47, 502
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 2 cut(s) 388, 697
BstMAI GTCTC 2 cut(s) 466, 626
BstMBI GATC 2 cut(s) 385, 694
BstMWI GCNNNNNNNGC 2 cut(s) 64, 73
BstNI CCWGG 3 cut(s) 394, 457, 465
BstPAI GACNNNNGTC 1 cut(s) 638
BstSCI CCNGG 3 cut(s) 392, 455, 463
BstSLI GKGCMC 1 cut(s) 716
BstV2I GAAGAC 1 cut(s) 151
Bsu15I ATCGAT 1 cut(s) 513
BsuRI GGCC 9 cut(s) 40, 201, 279, 430, 559, 570, 628, 714, 804
BsuTUI ATCGAT 1 cut(s) 513
BtsCI GGATG 2 cut(s) 47, 502
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 148, 670
BveI ACCTGC 2 cut(s) 226, 365
CaiI CAGNNNCTG 1 cut(s) 241
CfoI GCGC 1 cut(s) 58
Cfr13I GGNCC 8 cut(s) 238, 277, 320, 546, 712, 713, 786, 803
ClaI ATCGAT 1 cut(s) 513
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviAII CATG 4 cut(s) 15, 26, 164, 434
DpnI GATC 2 cut(s) 387, 696
DpnII GATC 2 cut(s) 385, 694
DraI TTTAAA 1 cut(s) 727
EaeI YGGCCR 3 cut(s) 428, 557, 626
Ecl136II GAGCTC 1 cut(s) 508
Eco147I AGGCCT 1 cut(s) 570
Eco24I GRGCYC 2 cut(s) 510, 716
Eco47I GGWCC 4 cut(s) 238, 320, 546, 786
Eco47III AGCGCT 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 508
EcoICRI GAGCTC 1 cut(s) 508
EcoO109I RGGNCCY 3 cut(s) 238, 712, 803
EcoRII CCWGG 3 cut(s) 392, 455, 463
EcoT38I GRGCYC 2 cut(s) 510, 716
Esp3I CGTCTC 1 cut(s) 466
FaeI CATG 4 cut(s) 18, 29, 167, 437
FaiI YATR 8 cut(s) 16, 27, 44, 165, 318, 435, 494, 796
FaqI GGGAC 3 cut(s) 48, 69, 422
FatI CATG 4 cut(s) 14, 25, 163, 433
FauI CCCGC 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 431
FokI GGATG 2 cut(s) 34, 509
FriOI GRGCYC 2 cut(s) 510, 716
Fsp4HI GCNGC 1 cut(s) 431
FspBI CTAG 2 cut(s) 111, 654
GlaI GCGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 431
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 9 cut(s) 40, 201, 279, 430, 559, 570, 628, 714, 804
HhaI GCGC 1 cut(s) 58
Hin1II CATG 4 cut(s) 18, 29, 167, 437
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HinfI GANTC 4 cut(s) 256, 460, 580, 689
Hpy166II GTNNAC 2 cut(s) 540, 604
Hpy188I TCNGA 3 cut(s) 106, 136, 694
Hpy188III TCNNGA 1 cut(s) 577
Hpy8I GTNNAC 2 cut(s) 540, 604
HpyAV CCTTC 2 cut(s) 433, 437
HpyCH4III ACNGT 5 cut(s) 23, 83, 226, 271, 674
HpyCH4V TGCA 5 cut(s) 76, 153, 235, 374, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 73
Hsp92II CATG 4 cut(s) 18, 29, 167, 437
HspAI GCGC 1 cut(s) 56
Kzo9I GATC 2 cut(s) 385, 694
LweI GCATC 2 cut(s) 312, 487
MaeI CTAG 2 cut(s) 111, 654
MaeIII GTNAC 2 cut(s) 665, 812
MalI GATC 2 cut(s) 387, 696
MboI GATC 2 cut(s) 385, 694
MboII GAAGA 2 cut(s) 156, 473
MhlI GDGCHC 2 cut(s) 510, 716
MlsI TGGCCA 2 cut(s) 559, 628
MluCI AATT 6 cut(s) 69, 129, 154, 335, 553, 728
MluNI TGGCCA 2 cut(s) 559, 628
Mox20I TGGCCA 2 cut(s) 559, 628
MscI TGGCCA 2 cut(s) 559, 628
MseI TTAA 2 cut(s) 726, 774
Msp20I TGGCCA 2 cut(s) 559, 628
MspR9I CCNGG 3 cut(s) 394, 457, 465
MvaI CCWGG 3 cut(s) 394, 457, 465
MwoI GCNNNNNNNGC 2 cut(s) 64, 73
NdeII GATC 2 cut(s) 385, 694
NlaIII CATG 4 cut(s) 18, 29, 167, 437
NlaIV GGNNCC 2 cut(s) 713, 714
NmuCI GTSAC 1 cut(s) 665
PceI AGGCCT 1 cut(s) 570
PcsI WCGNNNNNNNCGW 1 cut(s) 481
PfeI GAWTC 4 cut(s) 256, 460, 580, 689
PflMI CCANNNNNTGG 1 cut(s) 555
PfoI TCCNGGA 1 cut(s) 463
PkrI GCNGC 1 cut(s) 432
PpuMI RGGWCCY 1 cut(s) 238
PshAI GACNNNNGTC 1 cut(s) 638
Psp124BI GAGCTC 1 cut(s) 510
Psp5II RGGWCCY 1 cut(s) 238
Psp6I CCWGG 3 cut(s) 392, 455, 463
PspGI CCWGG 3 cut(s) 392, 455, 463
PspN4I GGNNCC 2 cut(s) 713, 714
PspOMI GGGCCC 1 cut(s) 712
PspPI GGNCC 8 cut(s) 238, 277, 320, 546, 712, 713, 786, 803
PspPPI RGGWCCY 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 241
SacI GAGCTC 1 cut(s) 510
SaqAI TTAA 2 cut(s) 726, 774
SatI GCNGC 1 cut(s) 431
Sau3AI GATC 2 cut(s) 385, 694
Sau96I GGNCC 8 cut(s) 238, 277, 320, 546, 712, 713, 786, 803
ScrFI CCNGG 3 cut(s) 394, 457, 465
SduI GDGCHC 2 cut(s) 510, 716
SetI ASST 9 cut(s) 69, 240, 325, 363, 372, 379, 510, 532, 771
SfaNI GCATC 2 cut(s) 312, 487
SinI GGWCC 4 cut(s) 238, 320, 546, 786
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
Sse9I AATT 6 cut(s) 69, 129, 154, 335, 553, 728
SseBI AGGCCT 1 cut(s) 570
SsiI CCGC 2 cut(s) 404, 431
SspMI CTAG 2 cut(s) 111, 654
SstI GAGCTC 1 cut(s) 510
StuI AGGCCT 1 cut(s) 570
StyD4I CCNGG 3 cut(s) 392, 455, 463
TaaI ACNGT 5 cut(s) 23, 83, 226, 271, 674
TaqI TCGA 1 cut(s) 513
TasI AATT 6 cut(s) 69, 129, 154, 335, 553, 728
TauI GCSGC 1 cut(s) 433
TfiI GAWTC 4 cut(s) 256, 460, 580, 689
Tru1I TTAA 2 cut(s) 726, 774
Tru9I TTAA 2 cut(s) 726, 774
TscAI CASTG 2 cut(s) 155, 677
TseFI GTSAC 1 cut(s) 665
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 2 cut(s) 131, 635
TspRI CASTG 2 cut(s) 155, 677
Van91I CCANNNNNTGG 1 cut(s) 555
VpaK11BI GGWCC 4 cut(s) 238, 320, 546, 786
XapI RAATTY 2 cut(s) 129, 728
XspI CTAG 2 cut(s) 111, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.