RchiOBHm_Chr2g0133541

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000147
Physical Location & Seq
Forward (+)
50407803 .. 50408780
978 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50470

Sequence Viewer

Length: 552 bp
ATGAACGAAGGACTGGACAGATTTTTGGGTAATTCTGCTTGGTGTGGCACCTTTCCTAGGTCCCAAGTGTTTCATCTTCATCGAATTGGGTCTGATCATCGCCCTATTATGCTGGACTTACTTCCATCTGAAGCCCGATCTCCTCGCCTTTTCAAGTTTGAACAAATGTGGAGTACTAAATCTGATTGTCAGGATGTAATTCGGCGAAGTTGGGATTATTTTCCGGGCCCCTCTCCTGCTTCTTGTTGGGAGAAGAATCTTGGCAAATGTCGTACTTCTCTTACTGCCTGGTCTAAGAGAACGTTTCCCAACACTAGAGCTCAGATTAATGTTTTGCAGTCAGAATTGCAGTCTCTCCAACAAAGCACTCTTCCAGATTCTATGGTTCATATCTCTCGAGTTACAAATCAGATCGCAGACTTGTGGAAGCTAGAGGAGATGTATTGGCAACAACGATCTCGTATTAATTGGCTCTCTTTGGGAGACGATAACACTGCTTCTTCCACCAGACTACTCTTCAGTGCCAACAATATAACAAGATTCTACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

183

Amino Acids

21.35

Weight (kDa)

9.04

Isoelectric Point (pI)

70.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AclI AACGTT 1 cut(s) 302
AcuI CTGAAG 2 cut(s) 150, 502
AfaI GTAC 2 cut(s) 175, 274
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 2 cut(s) 154, 161
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 2 cut(s) 320, 430
AluI AGCT 2 cut(s) 320, 430
Alw21I GWGCWC 1 cut(s) 322
Alw26I GTCTC 2 cut(s) 357, 477
Ama87I CYCGRG 1 cut(s) 396
AoxI GGCC 1 cut(s) 226
ApaI GGGCCC 1 cut(s) 230
AseI ATTAAT 2 cut(s) 327, 465
AspA2I CCTAGG 1 cut(s) 56
AspS9I GGNCC 3 cut(s) 60, 226, 227
AsuC2I CCSGG 1 cut(s) 225
AvaI CYCGRG 1 cut(s) 396
AvaII GGWCC 1 cut(s) 60
AvrII CCTAGG 1 cut(s) 56
BaeGI GKGCMC 1 cut(s) 230
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 2 cut(s) 230, 322
Bbv12I GWGCWC 1 cut(s) 322
BccI CCATC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 476, 510
BciT130I CCWGG 1 cut(s) 289
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 2 cut(s) 357, 477
BfaI CTAG 3 cut(s) 57, 315, 431
BlnI CCTAGG 1 cut(s) 56
BmcAI AGTACT 1 cut(s) 175
Bme1390I CCNGG 2 cut(s) 225, 289
Bme18I GGWCC 1 cut(s) 60
BmeT110I CYCGRG 1 cut(s) 396
BmgT120I GGNCC 3 cut(s) 60, 226, 227
BmiI GGNNCC 4 cut(s) 49, 62, 228, 229
BmrFI CCNGG 2 cut(s) 225, 289
BpuMI CCSGG 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 335
BseNI ACTGG 1 cut(s) 18
BseRI GAGGAG 2 cut(s) 132, 449
BseSI GKGCMC 1 cut(s) 230
BshFI GGCC 1 cut(s) 228
BshNI GGYRCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 322
BsiHKCI CYCGRG 1 cut(s) 396
BsiSI CCGG 1 cut(s) 224
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 57
BsmAI GTCTC 2 cut(s) 357, 477
BsmBI CGTCTC 1 cut(s) 477
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 1 cut(s) 228
BsoBI CYCGRG 1 cut(s) 396
Bsp120I GGGCCC 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 230, 322
Bsp143I GATC 4 cut(s) 94, 137, 411, 455
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 4 cut(s) 49, 62, 228, 229
BspT107I GGYRCC 1 cut(s) 47
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 4 cut(s) 94, 137, 411, 455
BssT1I CCWWGG 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 289
Bst6I CTCTTC 2 cut(s) 375, 521
BstDEI CTNAG 2 cut(s) 294, 321
BstENI CCTNNNNNAGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 4 cut(s) 97, 140, 414, 458
BstMAI GTCTC 2 cut(s) 357, 477
BstMBI GATC 4 cut(s) 94, 137, 411, 455
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 2 cut(s) 223, 287
BstSLI GKGCMC 1 cut(s) 230
BsuRI GGCC 1 cut(s) 228
BtgZI GCGATG 1 cut(s) 83
BtsCI GGATG 1 cut(s) 199
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 2 cut(s) 492, 526
Cfr13I GGNCC 3 cut(s) 60, 226, 227
Csp6I GTAC 2 cut(s) 174, 273
CviJI RGCY 5 cut(s) 134, 228, 320, 430, 472
CviKI_1 RGCY 5 cut(s) 134, 228, 320, 430, 472
CviQI GTAC 2 cut(s) 174, 273
DdeI CTNAG 2 cut(s) 294, 321
DpnI GATC 4 cut(s) 96, 139, 413, 457
DpnII GATC 4 cut(s) 94, 137, 411, 455
Eam1104I CTCTTC 2 cut(s) 375, 521
EarI CTCTTC 2 cut(s) 375, 521
Ecl136II GAGCTC 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 56
Eco24I GRGCYC 2 cut(s) 230, 322
Eco47I GGWCC 1 cut(s) 60
Eco53kI GAGCTC 1 cut(s) 320
Eco57I CTGAAG 2 cut(s) 150, 502
Eco88I CYCGRG 1 cut(s) 396
EcoICRI GAGCTC 1 cut(s) 320
EcoNI CCTNNNNNAGG 1 cut(s) 55
EcoO109I RGGNCCY 2 cut(s) 60, 227
EcoRII CCWGG 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 56
EcoT38I GRGCYC 2 cut(s) 230, 322
ErhI CCWWGG 1 cut(s) 56
Esp3I CGTCTC 1 cut(s) 477
FaiI YATR 4 cut(s) 110, 383, 390, 533
FaqI GGGAC 1 cut(s) 46
FbaI TGATCA 1 cut(s) 94
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 2 cut(s) 230, 322
FspBI CTAG 3 cut(s) 57, 315, 431
HaeIII GGCC 1 cut(s) 228
HapII CCGG 1 cut(s) 224
HinfI GANTC 3 cut(s) 256, 377, 540
HpaII CCGG 1 cut(s) 224
Hpy188I TCNGA 6 cut(s) 94, 130, 184, 324, 343, 411
Hpy188III TCNNGA 3 cut(s) 191, 374, 396
HpyCH4IV ACGT 1 cut(s) 302
HpyCH4V TGCA 2 cut(s) 337, 349
HpyF3I CTNAG 2 cut(s) 294, 321
HpySE526I ACGT 1 cut(s) 302
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 4 cut(s) 94, 137, 411, 455
LpnPI CCDG 8 cut(s) 98, 176, 237, 249, 274, 301, 387, 520
MaeI CTAG 3 cut(s) 57, 315, 431
MaeII ACGT 1 cut(s) 302
MaeIII GTNAC 1 cut(s) 400
MalI GATC 4 cut(s) 96, 139, 413, 457
MboI GATC 4 cut(s) 94, 137, 411, 455
MboII GAAGA 5 cut(s) 68, 265, 362, 492, 508
MhlI GDGCHC 2 cut(s) 230, 322
MluCI AATT 5 cut(s) 31, 84, 198, 344, 466
MmeI TCCRAC 1 cut(s) 382
MnlI CCTC 3 cut(s) 153, 241, 427
MseI TTAA 2 cut(s) 327, 465
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 2 cut(s) 225, 289
MvaI CCWGG 1 cut(s) 289
NciI CCSGG 1 cut(s) 225
NdeII GATC 4 cut(s) 94, 137, 411, 455
NlaIV GGNNCC 4 cut(s) 49, 62, 228, 229
PaeR7I CTCGAG 1 cut(s) 396
PfeI GAWTC 3 cut(s) 256, 377, 540
PpuMI RGGWCCY 1 cut(s) 60
PshBI ATTAAT 2 cut(s) 327, 465
Psp124BI GAGCTC 1 cut(s) 322
Psp1406I AACGTT 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 4 cut(s) 49, 62, 228, 229
PspOMI GGGCCC 1 cut(s) 226
PspPI GGNCC 3 cut(s) 60, 226, 227
PspPPI RGGWCCY 1 cut(s) 60
RsaI GTAC 2 cut(s) 175, 274
RsaNI GTAC 2 cut(s) 174, 273
SacI GAGCTC 1 cut(s) 322
SaqAI TTAA 2 cut(s) 327, 465
Sau3AI GATC 4 cut(s) 94, 137, 411, 455
Sau96I GGNCC 3 cut(s) 60, 226, 227
ScaI AGTACT 1 cut(s) 175
ScrFI CCNGG 2 cut(s) 225, 289
SduI GDGCHC 2 cut(s) 230, 322
SetI ASST 5 cut(s) 53, 62, 305, 322, 432
Sfr274I CTCGAG 1 cut(s) 396
SinI GGWCC 1 cut(s) 60
SlaI CTCGAG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 396
SmoI CTYRAG 1 cut(s) 396
Sse9I AATT 5 cut(s) 31, 84, 198, 344, 466
SspMI CTAG 3 cut(s) 57, 315, 431
SstI GAGCTC 1 cut(s) 322
StyD4I CCNGG 2 cut(s) 223, 287
StyI CCWWGG 1 cut(s) 56
TaiI ACGT 1 cut(s) 305
TaqI TCGA 2 cut(s) 82, 397
TasI AATT 5 cut(s) 31, 84, 198, 344, 466
TatI WGTACW 1 cut(s) 173
TfiI GAWTC 3 cut(s) 256, 377, 540
Tru1I TTAA 2 cut(s) 327, 465
Tru9I TTAA 2 cut(s) 327, 465
TscAI CASTG 2 cut(s) 499, 526
TspDTI ATGAA 4 cut(s) 17, 62, 68, 377
TspRI CASTG 2 cut(s) 499, 526
VpaK11BI GGWCC 1 cut(s) 60
VspI ATTAAT 2 cut(s) 327, 465
XagI CCTNNNNNAGG 1 cut(s) 55
XhoI CTCGAG 1 cut(s) 396
XmaJI CCTAGG 1 cut(s) 56
XspI CTAG 3 cut(s) 57, 315, 431
ZrmI AGTACT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.