Rmu_sc0001464.1_g000026

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001464.1
OG0000147
Physical Location & Seq
Reverse (-)
125086 .. 125517
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001464.1_g000026.1.cds

Sequence Viewer

Length: 432 bp
atgccaaaaggaaggggcatcccctggctttggaacagacccaagttcttgaaggaatttatggatcgtaatgccttgtttgacctgaatttctctaggctcaaattcacttgggataataggagggaaaacactaatgatcttatccgtgagagacttgatcgggcagttggcaatgcaatgtggctctctacatggccggattctgtggttcatcatgaatcaagagtgggttctgatcactgccccttggttgtctttactcacccacgtgtaaggaaaggccccaagattttccgctttgaagcttcatgggtcgatgatccggaatgtgaagaaatcattagtacaaattggaagaatgatcctgcctgtaatcctctccatttgtggatttccaatatttcatgtaccgtgagcaacacactttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

143

Amino Acids

16.89

Weight (kDa)

8.44

Isoelectric Point (pI)

35.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 325
AciI CCGC 1 cut(s) 298
AclWI GGATC 3 cut(s) 72, 317, 359
AcoI YGGCCR 1 cut(s) 197
AcsI RAATTY 3 cut(s) 56, 88, 104
AcvI CACGTG 1 cut(s) 272
AfaI GTAC 2 cut(s) 349, 412
AfiI CCNNNNNNNGG 1 cut(s) 30
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 2 cut(s) 52, 305
AjnI CCWGG 1 cut(s) 23
AleI CACNNNNGTG 1 cut(s) 270
AluBI AGCT 1 cut(s) 308
AluI AGCT 1 cut(s) 308
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 3 cut(s) 72, 317, 359
Aor13HI TCCGGA 1 cut(s) 325
AoxI GGCC 2 cut(s) 197, 283
ApoI RAATTY 3 cut(s) 56, 88, 104
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 257
BbrPI CACGTG 1 cut(s) 272
BciT130I CCWGG 1 cut(s) 25
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 23, 249
BsaWI WCCGGW 1 cut(s) 325
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse3DI GCAATG 2 cut(s) 181, 186
BseAI TCCGGA 1 cut(s) 325
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 23, 249
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMI GCAATG 2 cut(s) 181, 186
BshFI GGCC 2 cut(s) 199, 285
BsiSI CCGG 2 cut(s) 200, 326
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 148
BsnI GGCC 2 cut(s) 199, 285
Bsp13I TCCGGA 1 cut(s) 325
Bsp143I GATC 6 cut(s) 64, 139, 160, 238, 322, 364
BspACI CCGC 1 cut(s) 298
BspANI GGCC 2 cut(s) 199, 285
BspEI TCCGGA 1 cut(s) 325
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 286
BspPI GGATC 3 cut(s) 72, 317, 359
BsrDI GCAATG 2 cut(s) 181, 186
BssECI CCNNGG 2 cut(s) 23, 249
BssMI GATC 6 cut(s) 64, 139, 160, 238, 322, 364
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 415
BstBAI YACGTR 1 cut(s) 272
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 6 cut(s) 67, 142, 163, 241, 325, 367
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 6 cut(s) 64, 139, 160, 238, 322, 364
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 23
BsuRI GGCC 2 cut(s) 199, 285
BtsCI GGATG 1 cut(s) 18
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 241
CciI TCATGA 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 284
Csp6I GTAC 2 cut(s) 348, 411
CviAII CATG 4 cut(s) 195, 218, 312, 408
CviJI RGCY 6 cut(s) 28, 100, 187, 199, 285, 308
CviKI_1 RGCY 6 cut(s) 28, 100, 187, 199, 285, 308
CviQI GTAC 2 cut(s) 348, 411
DpnI GATC 6 cut(s) 66, 141, 162, 240, 324, 366
DpnII GATC 6 cut(s) 64, 139, 160, 238, 322, 364
EaeI YGGCCR 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 249
Eco72I CACGTG 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 4 cut(s) 198, 221, 315, 411
FaiI YATR 5 cut(s) 62, 196, 219, 313, 409
FatI CATG 4 cut(s) 194, 217, 311, 407
FbaI TGATCA 1 cut(s) 238
FokI GGATG 1 cut(s) 5
FspBI CTAG 1 cut(s) 96
HaeIII GGCC 2 cut(s) 199, 285
HapII CCGG 2 cut(s) 200, 326
Hin1II CATG 4 cut(s) 198, 221, 315, 411
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 2 cut(s) 203, 221
HpaII CCGG 2 cut(s) 200, 326
HphI GGTGA 1 cut(s) 257
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 4 cut(s) 49, 218, 225, 326
HpyAV CCTTC 2 cut(s) 6, 46
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 1 cut(s) 179
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 4 cut(s) 198, 221, 315, 411
Kpn2I TCCGGA 1 cut(s) 325
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 6 cut(s) 64, 139, 160, 238, 322, 364
LpnPI CCDG 7 cut(s) 10, 37, 98, 213, 339, 381, 385
LweI GCATC 1 cut(s) 27
MaeI CTAG 1 cut(s) 96
MaeII ACGT 1 cut(s) 271
MalI GATC 6 cut(s) 66, 141, 162, 240, 324, 366
MboI GATC 6 cut(s) 64, 139, 160, 238, 322, 364
MboII GAAGA 2 cut(s) 347, 370
MluCI AATT 4 cut(s) 56, 88, 104, 352
MnlI CCTC 2 cut(s) 117, 390
MroI TCCGGA 1 cut(s) 325
MseI TTAA 1 cut(s) 430
MslI CAYNNNNRTG 1 cut(s) 270
MspI CCGG 2 cut(s) 200, 326
MspR9I CCNGG 1 cut(s) 25
MvaI CCWGG 1 cut(s) 25
NdeII GATC 6 cut(s) 64, 139, 160, 238, 322, 364
NlaIII CATG 4 cut(s) 198, 221, 315, 411
NlaIV GGNNCC 1 cut(s) 286
OliI CACNNNNGTG 1 cut(s) 270
PagI TCATGA 1 cut(s) 217
PfeI GAWTC 2 cut(s) 203, 221
PmaCI CACGTG 1 cut(s) 272
PmlI CACGTG 1 cut(s) 272
Ppu21I YACGTR 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 23
PspCI CACGTG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 1 cut(s) 284
RsaI GTAC 2 cut(s) 349, 412
RsaNI GTAC 2 cut(s) 348, 411
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 1 cut(s) 430
Sau3AI GATC 6 cut(s) 64, 139, 160, 238, 322, 364
Sau96I GGNCC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 25
SetI ASST 3 cut(s) 87, 274, 310
SfaNI GCATC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 270
Sse9I AATT 4 cut(s) 56, 88, 104, 352
SsiI CCGC 1 cut(s) 298
SspI AATATT 1 cut(s) 403
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 415
TaiI ACGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 318
TasI AATT 4 cut(s) 56, 88, 104, 352
TatI WGTACW 1 cut(s) 347
TfiI GAWTC 2 cut(s) 203, 221
Tru1I TTAA 1 cut(s) 430
Tru9I TTAA 1 cut(s) 430
TscAI CASTG 1 cut(s) 248
TspDTI ATGAA 4 cut(s) 203, 234, 300, 396
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 1 cut(s) 248
XapI RAATTY 3 cut(s) 56, 88, 104
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.