Rmu_sc0006413.1_g000006

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006413.1
OG0000147
Physical Location & Seq
Reverse (-)
45068 .. 45661
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006413.1_g000006.1.cds

Sequence Viewer

Length: 594 bp
atgttgaaacacaaggcggctttcaagtttgaatctttttgggcagatgaagaggaggtgggcactataattgaggagagttgggttgtcaactcgtcttatacaagtctcaagaattggacctcaaatctggacagatgcaagactcgtcttcgcatatggagcaataacaaatttcccatatgcaataaagatgagatcagaagatgtcttgaggatctggaggtgctccaactgcagcacccttttgacacctcaaaacaacagttggaactgtccaataaattggggaatttgtggcttcgggaagagaagttttggcaccaacgatcgagagttaattggctgaaaacgggggatactaattccaggttcttccacttgtccaccatacaaagaaggcaaaggaaccgtattctaaaaattcaaaatgaagcggaggagtggatcgtgggtgagaggctcattaggggtgaatttgaagctcagtttaaaaaggtttttaccagctccagatccaggacatggggaaacacttttgatggcacttctgcctgtgtttcgaatgatgtgaatgctgctctattagcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

197

Amino Acids

23.38

Weight (kDa)

9.11

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 321
AccB7I CCANNNNNTGG 1 cut(s) 525
AciI CCGC 2 cut(s) 17, 437
AclWI GGATC 3 cut(s) 225, 455, 510
AcsI RAATTY 4 cut(s) 173, 292, 423, 476
AfiI CCNNNNNNNGG 2 cut(s) 519, 525
AgsI TTSAA 5 cut(s) 7, 25, 32, 428, 482
AjnI CCWGG 2 cut(s) 368, 518
AluBI AGCT 2 cut(s) 485, 510
AluI AGCT 2 cut(s) 485, 510
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 3 cut(s) 225, 455, 510
ApeKI GCWGC 2 cut(s) 238, 578
ApoI RAATTY 4 cut(s) 173, 292, 423, 476
AspS9I GGNCC 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 467, 485
AsuII TTCGAA 1 cut(s) 563
AvaII GGWCC 1 cut(s) 120
BaeGI GKGCMC 1 cut(s) 65
BanI GGYRCC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 250, 565
BccI CCATC 1 cut(s) 536
BciT130I CCWGG 2 cut(s) 370, 520
BciVI GTATCC 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 352
BisI GCNGC 3 cut(s) 18, 239, 579
BlsI GCNGC 3 cut(s) 19, 240, 580
Bme1390I CCNGG 2 cut(s) 370, 520
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 2 cut(s) 323, 410
BmrFI CCNGG 2 cut(s) 370, 520
BmsI GCATC 1 cut(s) 128
BpiI GAAGAC 1 cut(s) 143
BpmI CTGGAG 2 cut(s) 242, 496
Bpu14I TTCGAA 1 cut(s) 563
BpuEI CTTGAG 2 cut(s) 95, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 519, 525
BseBI CCWGG 2 cut(s) 370, 520
BseLI CCNNNNNNNGG 2 cut(s) 519, 525
BseMII CTCAG 1 cut(s) 500
BseRI GAGGAG 3 cut(s) 68, 89, 455
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 2 cut(s) 250, 565
Bsh1285I CGRYCG 1 cut(s) 332
BshNI GGYRCC 1 cut(s) 321
BsiEI CGRYCG 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 231
BslI CCNNNNNNNGG 2 cut(s) 519, 525
BsmAI GTCTC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 580
Bsp119I TTCGAA 1 cut(s) 563
Bsp1286I GDGCHC 2 cut(s) 65, 231
Bsp143I GATC 5 cut(s) 198, 217, 329, 447, 515
BspACI CCGC 2 cut(s) 17, 437
BspCNI CTCAG 1 cut(s) 499
BspLI GGNNCC 2 cut(s) 323, 410
BspMAI CTGCAG 1 cut(s) 240
BspPI GGATC 3 cut(s) 225, 455, 510
BspT104I TTCGAA 1 cut(s) 563
BspT107I GGYRCC 1 cut(s) 321
BssMI GATC 5 cut(s) 198, 217, 329, 447, 515
Bst2UI CCWGG 2 cut(s) 370, 520
Bst4CI ACNGT 3 cut(s) 267, 276, 413
Bst6I CTCTTC 2 cut(s) 45, 303
BstBI TTCGAA 1 cut(s) 563
BstDEI CTNAG 1 cut(s) 486
BstKTI GATC 5 cut(s) 201, 220, 332, 450, 518
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 5 cut(s) 198, 217, 329, 447, 515
BstMCI CGRYCG 1 cut(s) 332
BstMWI GCNNNNNNNGC 3 cut(s) 162, 235, 587
BstNI CCWGG 2 cut(s) 370, 520
BstSCI CCNGG 2 cut(s) 368, 518
BstSFI CTRYAG 1 cut(s) 236
BstSLI GKGCMC 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 250, 565
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 2 cut(s) 217, 515
BstXI CCANNNNNNTGG 1 cut(s) 286
BstYI RGATCY 2 cut(s) 217, 515
BsuI GTATCC 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 120
CviAII CATG 1 cut(s) 525
CviJI RGCY 6 cut(s) 20, 301, 346, 463, 485, 510
CviKI_1 RGCY 6 cut(s) 20, 301, 346, 463, 485, 510
DdeI CTNAG 1 cut(s) 486
DpnI GATC 5 cut(s) 200, 219, 331, 449, 517
DpnII GATC 5 cut(s) 198, 217, 329, 447, 515
DraI TTTAAA 1 cut(s) 493
Eam1104I CTCTTC 2 cut(s) 45, 303
EarI CTCTTC 2 cut(s) 45, 303
Eco47I GGWCC 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 368, 518
FaeI CATG 1 cut(s) 528
FaiI YATR 9 cut(s) 68, 102, 158, 160, 182, 184, 392, 526, 592
FatI CATG 1 cut(s) 524
FauNDI CATATG 2 cut(s) 158, 182
Fnu4HI GCNGC 3 cut(s) 18, 239, 579
Fsp4HI GCNGC 3 cut(s) 18, 239, 579
GluI GCNGC 3 cut(s) 18, 239, 579
GsuI CTGGAG 2 cut(s) 242, 496
Hin1II CATG 1 cut(s) 528
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 2 cut(s) 32, 145
HphI GGTGA 2 cut(s) 467, 485
Hpy166II GTNNAC 2 cut(s) 91, 387
Hpy188I TCNGA 1 cut(s) 203
Hpy188III TCNNGA 7 cut(s) 112, 131, 212, 221, 305, 333, 513
Hpy8I GTNNAC 2 cut(s) 91, 387
HpyAV CCTTC 1 cut(s) 393
HpyCH4III ACNGT 3 cut(s) 267, 276, 413
HpyCH4V TGCA 3 cut(s) 141, 186, 238
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 235, 587
HpyF3I CTNAG 1 cut(s) 486
Hsp92II CATG 1 cut(s) 528
Kzo9I GATC 5 cut(s) 198, 217, 329, 447, 515
LmnI GCTCC 3 cut(s) 162, 234, 515
LpnPI CCDG 9 cut(s) 116, 206, 355, 382, 505, 520, 526, 532, 568
Lsp1109I GCAGC 2 cut(s) 250, 565
LweI GCATC 1 cut(s) 128
MalI GATC 5 cut(s) 200, 219, 331, 449, 517
MboI GATC 5 cut(s) 198, 217, 329, 447, 515
MboII GAAGA 5 cut(s) 62, 143, 216, 320, 367
MflI RGATCY 2 cut(s) 217, 515
MhlI GDGCHC 2 cut(s) 65, 231
MluCI AATT 9 cut(s) 69, 115, 173, 284, 292, 340, 364, 423, 476
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 2 cut(s) 249, 256
MnlI CCTC 9 cut(s) 46, 49, 67, 133, 208, 217, 265, 433, 453
MseI TTAA 2 cut(s) 339, 492
MspR9I CCNGG 2 cut(s) 370, 520
Mva1269I GAATGC 1 cut(s) 580
MvaI CCWGG 2 cut(s) 370, 520
MwoI GCNNNNNNNGC 3 cut(s) 162, 235, 587
NdeI CATATG 2 cut(s) 158, 182
NdeII GATC 5 cut(s) 198, 217, 329, 447, 515
NlaIII CATG 1 cut(s) 528
NlaIV GGNNCC 2 cut(s) 323, 410
NspV TTCGAA 1 cut(s) 563
PctI GAATGC 1 cut(s) 580
PfeI GAWTC 1 cut(s) 32
PflMI CCANNNNNTGG 1 cut(s) 525
PfoI TCCNGGA 1 cut(s) 518
PkrI GCNGC 3 cut(s) 19, 240, 580
Ple19I CGATCG 1 cut(s) 332
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 368, 518
PspGI CCWGG 2 cut(s) 368, 518
PspN4I GGNNCC 2 cut(s) 323, 410
PspPI GGNCC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 240
PsuI RGATCY 2 cut(s) 217, 515
PvuI CGATCG 1 cut(s) 332
SaqAI TTAA 2 cut(s) 339, 492
SatI GCNGC 3 cut(s) 18, 239, 579
Sau3AI GATC 5 cut(s) 198, 217, 329, 447, 515
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 2 cut(s) 370, 520
SduI GDGCHC 2 cut(s) 65, 231
SetI ASST 8 cut(s) 60, 125, 228, 257, 374, 487, 501, 512
SfaNI GCATC 1 cut(s) 128
SfcI CTRYAG 1 cut(s) 236
SfuI TTCGAA 1 cut(s) 563
SinI GGWCC 1 cut(s) 120
SmlI CTYRAG 2 cut(s) 110, 212
SmoI CTYRAG 2 cut(s) 110, 212
Sse9I AATT 9 cut(s) 69, 115, 173, 284, 292, 340, 364, 423, 476
SsiI CCGC 2 cut(s) 17, 437
StyD4I CCNGG 2 cut(s) 368, 518
TaaI ACNGT 3 cut(s) 267, 276, 413
TaqI TCGA 2 cut(s) 332, 563
TasI AATT 9 cut(s) 69, 115, 173, 284, 292, 340, 364, 423, 476
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 2 cut(s) 339, 492
Tru9I TTAA 2 cut(s) 339, 492
TseI GCWGC 2 cut(s) 238, 578
TspDTI ATGAA 2 cut(s) 63, 447
Van91I CCANNNNNTGG 1 cut(s) 525
VpaK11BI GGWCC 1 cut(s) 120
XapI RAATTY 4 cut(s) 173, 292, 423, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.