Rorug07G0113500

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000147
Physical Location & Seq
Reverse (-)
8863687 .. 8868343
4657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0113500.1

Sequence Viewer

Length: 1932 bp
ATGGAGAAGGCAAGCGTTCGAGTTCCATGTCCTAAGCTTCTCCTCTGCAAGAACGAACCAGCTGGCCTCCAATGGCTGATCGGATCCCCATTCTTCCCGCCACTCACCGTCGTCTCCACACTAAAATGCATCCACACCGATTCCTCCTCCTCATCTCCAGACTACACCAGAGAATCAGAAGAGCTTCGGACGTTACTGTTAAAAGGATTTCACGTCATCGGAGCTTTAGTTGTGGCCAATTCCGACGAAGAGAAGCACGCCGGCGAGGCTATTGCTGCGGCGAGAAGGTTAGGAAAGCTTGTCTGTGGTGGAAGTGAGAAATTGGATGAGCAGGAAGTAATTGGAGCTGTTGCAGAGTCTAAAGGTGGAGGCATTCGGTTTTTCGTGTCGAAATCGGAGAGTTCTAGGAGCTTTGAGTGTGTTGATGTGGTGTATGAAGATGATCCTGAGAAGTTTGTTTGGGAGAGGGGTTGTTTGATTCGATGTGAGCTTCCTTTGAAGCTGCCGATTTACTATCCAGTAAACAAGCCTTCTGATTCCGAACGGATCTTGCAGCGTGCAATTGAAGCAGTTGTTTCCAAGTTCAAAGACCCAAAGGCTGCATACCTGGTAGAAACTCTAAGCAAAACTTCATCTGAAGTACCTCAGCCTGTCATCATTCGTGGTGGAGATTTGGATTTTGACATGGATCTCTCAAATGTCAAACTTTTGGGTGAAAGTGGCCATGATTCTGATGCTAAGTTCTTGCCATGTTCTCATTTTTGTTTGGAGAGTAAAAAAGACTCCCGCGAGTATTCTGCTGAGCATGCAGATAGAATCCAAGTAAATATTCTGCTCAATAGTTCAGAGAAATCTCAAAAATCTACTGCACCTGTAGCAGAATATTTTCCAGCTCTGGAAGAAGTTAGAATTTTGGTTGTAGATTTCAAGCTAGAAGTGCTCTGTTATGCAGCCAAAGGTCTCTCACTGGTGCATGCAGTTTCAAAGTTAGTCATCCCAGGGTTAGTTGATCAGTTAAATAGAGTAGGAAAGACTGTCCTGCCCAACCTCTTAGAGCAACGTCCTCAGCTACATCCCTATCACTTTAATCCTCCTGGTTTTCTGCATCCGGTTACTGTTATTTATGAACTCAACTATGGCGAAACAGAGATGAAGCAAGTTGAAGTTAGGAAATCCCTACACTTAAGGCTGGGTTTACCTTGTGATCGTCCGCTTTTAAGAATTGCTAATGCTCTGGATTTCTCTGGCGTAAGGAGCGACCCAACACGAAAAGGTACTACTTTGCTTAAAGATGTACACATTGGGATTCCAAGCAGTGGAGTTTCAGGGGGCAGTGTGTCTCTGGTGCAAGGCTCTTATGAGTACTACCATTATCTACAAGATGGATTTAATGACTCGGGCTGGGGTTGTGCTTACCGTTCTCTTCAAACGATCATTTCATGGTTCAGACTCCAACACTATACATCTATAGATGTTCCCTTGCATAGGGAAATACAACAGTCACTTGTAGAGATTGGCGATAAGGATCCTTCTTTCATTGGGTCACGTGAATGGATTGGTGCCATTGAGTTGAGCTTTGTTCTGGACAAGCTTTTGGGAGTTAGTTGCAAAGTCATGAATTTTAGATCTGGAGCTGAGCTTCCCGAAAAATGTCGAGAGCTGGCTTTGCACTTTGAGAATCAAGGAACACCTATTATGATTGGTGGTGGAGTTCTTGCATATACCCTCTTGGGAGTTGATTACAATGACGCAAGCGGAGACTGTGCGTTTCTTATACTTGATCCTCACTATACAGGCAACGATGAACACAAGAAAATAGTAAACGGTGGATGGTGTGGGTGGAAAAAGGCTGTTGATAGCAAGGGAAAGAGTTTCTTTTTGCATGATAAGTTCTACAATCTTCTGCTTCCACAGAGGCCTGATATGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos Exo_endo_phos_2

Protein Analysis

643

Amino Acids

71.4

Weight (kDa)

5.99

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UfSP2_N PF20908 259 - 415 1.1e-12 Ubiquitin-fold modifier 1 specific protease 2, N-terminal
Peptidase_C78 PF07910 445 - 635 5.5e-67 Peptidase family C78
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1559
AccB7I CCANNNNNTGG 1 cut(s) 1316
AccII CGCG 1 cut(s) 789
AciI CCGC 5 cut(s) 98, 278, 787, 1211, 1755
AclWI GGATC 8 cut(s) 78, 91, 437, 554, 696, 1520, 1533, 1775
AcoI YGGCCR 2 cut(s) 234, 721
AcsI RAATTY 2 cut(s) 909, 1618
AcuI CTGAAG 1 cut(s) 657
AcvI CACGTG 1 cut(s) 1547
AfaI GTAC 4 cut(s) 642, 1276, 1296, 1364
AfiI CCNNNNNNNGG 2 cut(s) 1316, 1485
AflII CTTAAG 1 cut(s) 1183
AgsI TTSAA 7 cut(s) 499, 566, 586, 928, 984, 1163, 1427
AjiI CACGTC 1 cut(s) 214
AjnI CCWGG 3 cut(s) 606, 997, 1093
AjuI GAANNNNNNNTTGG 2 cut(s) 813, 845
Alw21I GWGCWC 1 cut(s) 942
Alw26I GTCTC 4 cut(s) 118, 965, 1344, 1752
AlwI GGATC 8 cut(s) 78, 91, 437, 554, 696, 1520, 1533, 1775
Ama87I CYCGRG 1 cut(s) 1396
AoxI GGCC 4 cut(s) 64, 234, 721, 1916
ApeKI GCWGC 5 cut(s) 275, 502, 553, 599, 950
ApoI RAATTY 2 cut(s) 909, 1618
Asp700I GAANNNNTTC 2 cut(s) 183, 885
AsuHPI GGTGA 2 cut(s) 97, 725
AvaI CYCGRG 1 cut(s) 1396
BalI TGGCCA 2 cut(s) 236, 723
BamHI GGATCC 2 cut(s) 83, 1525
BanI GGYRCC 1 cut(s) 1559
BbrPI CACGTG 1 cut(s) 1547
Bbv12I GWGCWC 1 cut(s) 942
BbvCI CCTCAGC 2 cut(s) 645, 1065
BbvI GCAGC 5 cut(s) 262, 489, 565, 586, 962
BccI CCATC 2 cut(s) 1376, 1824
BcgI CGANNNNNNTGC 4 cut(s) 254, 288, 779, 813
BciT130I CCWGG 3 cut(s) 608, 999, 1095
BclI TGATCA 1 cut(s) 1009
BcoDI GTCTC 4 cut(s) 118, 965, 1344, 1752
BfaI CTAG 2 cut(s) 405, 932
BfmI CTRYAG 2 cut(s) 873, 1467
BfrI CTTAAG 1 cut(s) 1183
BglI GCCNNNNNGGC 1 cut(s) 266
BglII AGATCT 1 cut(s) 1625
BisI GCNGC 6 cut(s) 276, 279, 503, 554, 600, 951
BlpI GCTNAGC 2 cut(s) 801, 1635
BlsI GCNGC 6 cut(s) 277, 280, 504, 555, 601, 952
BmcAI AGTACT 1 cut(s) 1364
Bme1390I CCNGG 3 cut(s) 608, 999, 1095
BmeT110I CYCGRG 1 cut(s) 1396
BmgBI CACGTC 1 cut(s) 214
BmiI GGNNCC 3 cut(s) 85, 1527, 1561
BmrFI CCNGG 3 cut(s) 608, 999, 1095
BmsI GCATC 3 cut(s) 138, 724, 1114
BpmI CTGGAG 2 cut(s) 141, 1650
Bpu10I CCTNAGC 3 cut(s) 33, 645, 1065
Bpu1102I GCTNAGC 2 cut(s) 801, 1635
BsaAI YACGTR 1 cut(s) 1547
BsaBI GATNNNNATC 1 cut(s) 1524
BsaI GGTCTC 1 cut(s) 965
BsaJI CCNNGG 2 cut(s) 997, 998
BsaWI WCCGGW 1 cut(s) 1108
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bsc4I CCNNNNNNNGG 2 cut(s) 1316, 1485
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 2 cut(s) 518, 972
Bse8I GATNNNNATC 1 cut(s) 1524
BseBI CCWGG 3 cut(s) 608, 999, 1095
BseDI CCNNGG 2 cut(s) 997, 998
BseGI GGATG 6 cut(s) 129, 331, 993, 1072, 1105, 1835
BseJI GATNNNNATC 1 cut(s) 1524
BseLI CCNNNNNNNGG 2 cut(s) 1316, 1485
BseMII CTCAG 5 cut(s) 438, 659, 792, 1079, 1626
BseNI ACTGG 2 cut(s) 518, 972
BseRI GAGGAG 3 cut(s) 32, 136, 139
BseXI GCAGC 5 cut(s) 262, 489, 565, 586, 962
BseYI CCCAGC 2 cut(s) 1189, 1401
BsgI GTGCAG 1 cut(s) 852
Bsh1236I CGCG 1 cut(s) 789
BshFI GGCC 4 cut(s) 66, 236, 723, 1918
BshNI GGYRCC 1 cut(s) 1559
BsiHKAI GWGCWC 1 cut(s) 942
BsiHKCI CYCGRG 1 cut(s) 1396
BsiSI CCGG 2 cut(s) 261, 1109
BslI CCNNNNNNNGG 2 cut(s) 1316, 1485
BsmAI GTCTC 4 cut(s) 118, 965, 1344, 1752
BsmBI CGTCTC 1 cut(s) 118
BsmI GAATGC 1 cut(s) 372
BsnI GGCC 4 cut(s) 66, 236, 723, 1918
Bso31I GGTCTC 1 cut(s) 965
BsoBI CYCGRG 1 cut(s) 1396
Bsp1286I GDGCHC 1 cut(s) 942
Bsp1407I TGTACA 1 cut(s) 1294
Bsp1720I GCTNAGC 2 cut(s) 801, 1635
BspACI CCGC 5 cut(s) 98, 278, 787, 1211, 1755
BspANI GGCC 4 cut(s) 66, 236, 723, 1918
BspCNI CTCAG 5 cut(s) 439, 658, 793, 1078, 1627
BspFNI CGCG 1 cut(s) 789
BspHI TCATGA 1 cut(s) 1614
BspLI GGNNCC 3 cut(s) 85, 1527, 1561
BspPI GGATC 8 cut(s) 78, 91, 437, 554, 696, 1520, 1533, 1775
BspQI GCTCTTC 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 1559
BspTI CTTAAG 1 cut(s) 1183
BspTNI GGTCTC 1 cut(s) 965
BsrFI RCCGGY 1 cut(s) 260
BsrGI TGTACA 1 cut(s) 1294
BsrI ACTGG 2 cut(s) 518, 972
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 2 cut(s) 997, 998
Bst2UI CCWGG 3 cut(s) 608, 999, 1095
Bst4CI ACNGT 8 cut(s) 109, 198, 1036, 1117, 1418, 1500, 1763, 1826
Bst6I CTCTTC 3 cut(s) 174, 243, 1428
BstAFI CTTAAG 1 cut(s) 1183
BstAUI TGTACA 1 cut(s) 1294
BstBAI YACGTR 1 cut(s) 1547
BstC8I GCNNGC 9 cut(s) 13, 64, 258, 262, 558, 807, 975, 1662, 1753
BstDEI CTNAG 9 cut(s) 33, 447, 620, 645, 738, 801, 1051, 1065, 1635
BstENI CCTNNNNNAGG 1 cut(s) 1483
BstF5I GGATG 6 cut(s) 129, 331, 993, 1072, 1105, 1835
BstFNI CGCG 1 cut(s) 789
BstMAI GTCTC 4 cut(s) 118, 965, 1344, 1752
BstMWI GCNNNNNNNGC 8 cut(s) 266, 275, 566, 806, 875, 937, 1254, 1666
BstNI CCWGG 3 cut(s) 608, 999, 1095
BstNSI RCATGY 2 cut(s) 809, 977
BstSCI CCNGG 3 cut(s) 606, 997, 1093
BstSFI CTRYAG 2 cut(s) 873, 1467
BstUI CGCG 1 cut(s) 789
BstV1I GCAGC 5 cut(s) 262, 489, 565, 586, 962
BstX2I RGATCY 5 cut(s) 83, 546, 688, 1525, 1625
BstYI RGATCY 5 cut(s) 83, 546, 688, 1525, 1625
BsuRI GGCC 4 cut(s) 66, 236, 723, 1918
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 6 cut(s) 129, 331, 993, 1072, 1105, 1835
BtsI GCAGTG 2 cut(s) 1321, 1339
BtsIMutI CAGTG 3 cut(s) 965, 1321, 1339
Cac8I GCNNGC 9 cut(s) 13, 64, 258, 262, 558, 807, 975, 1662, 1753
CciI TCATGA 1 cut(s) 1614
Cfr10I RCCGGY 1 cut(s) 260
CseI GACGC 1 cut(s) 1757
CsiI ACCWGGT 1 cut(s) 606
Csp6I GTAC 4 cut(s) 641, 1275, 1295, 1363
CviAII CATG 9 cut(s) 27, 685, 725, 750, 806, 974, 1440, 1615, 1883
CviQI GTAC 4 cut(s) 641, 1275, 1295, 1363
DdeI CTNAG 9 cut(s) 33, 447, 620, 645, 738, 801, 1051, 1065, 1635
EaeI YGGCCR 2 cut(s) 234, 721
Eam1104I CTCTTC 3 cut(s) 174, 243, 1428
EarI CTCTTC 3 cut(s) 174, 243, 1428
Eco147I AGGCCT 1 cut(s) 1918
Eco31I GGTCTC 1 cut(s) 965
Eco57I CTGAAG 1 cut(s) 657
Eco72I CACGTG 1 cut(s) 1547
Eco88I CYCGRG 1 cut(s) 1396
EcoNI CCTNNNNNAGG 1 cut(s) 1483
EcoRII CCWGG 3 cut(s) 606, 997, 1093
EcoT22I ATGCAT 1 cut(s) 131
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 9 cut(s) 30, 688, 728, 753, 809, 977, 1443, 1618, 1886
FalI AAGNNNNNCTT 4 cut(s) 613, 645, 1859, 1891
FatI CATG 9 cut(s) 26, 684, 724, 749, 805, 973, 1439, 1614, 1882
FauI CCCGC 2 cut(s) 105, 794
FbaI TGATCA 1 cut(s) 1009
Fnu4HI GCNGC 6 cut(s) 276, 279, 503, 554, 600, 951
FokI GGATG 6 cut(s) 116, 338, 980, 1059, 1092, 1842
Fsp4HI GCNGC 6 cut(s) 276, 279, 503, 554, 600, 951
FspBI CTAG 2 cut(s) 405, 932
GluI GCNGC 6 cut(s) 276, 279, 503, 554, 600, 951
GsaI CCCAGC 2 cut(s) 1193, 1405
GsuI CTGGAG 2 cut(s) 141, 1650
HaeIII GGCC 4 cut(s) 66, 236, 723, 1918
HapII CCGG 2 cut(s) 261, 1109
HgaI GACGC 1 cut(s) 1757
Hin1II CATG 9 cut(s) 30, 688, 728, 753, 809, 977, 1443, 1618, 1886
HindIII AAGCTT 3 cut(s) 35, 296, 1589
HpaII CCGG 2 cut(s) 261, 1109
HphI GGTGA 2 cut(s) 97, 725
Hpy166II GTNNAC 4 cut(s) 523, 1196, 1297, 1822
Hpy188III TCNNGA 9 cut(s) 158, 446, 896, 1235, 1583, 1615, 1629, 1643, 1655
Hpy8I GTNNAC 4 cut(s) 523, 1196, 1297, 1822
Hpy99I CGWCG 2 cut(s) 113, 248
HpyAV CCTTC 3 cut(s) 279, 540, 1539
HpyCH4III ACNGT 8 cut(s) 109, 198, 1036, 1117, 1418, 1500, 1763, 1826
HpyCH4IV ACGT 4 cut(s) 191, 213, 1060, 1546
HpyF10VI GCNNNNNNNGC 8 cut(s) 266, 275, 566, 806, 875, 937, 1254, 1666
HpyF3I CTNAG 9 cut(s) 33, 447, 620, 645, 738, 801, 1051, 1065, 1635
HpySE526I ACGT 4 cut(s) 191, 213, 1060, 1546
Hsp92II CATG 9 cut(s) 30, 688, 728, 753, 809, 977, 1443, 1618, 1886
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 1009
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 5 cut(s) 221, 344, 408, 1254, 1631
Lsp1109I GCAGC 5 cut(s) 262, 489, 565, 586, 962
LweI GCATC 3 cut(s) 138, 724, 1114
MabI ACCWGGT 1 cut(s) 606
MaeI CTAG 2 cut(s) 405, 932
MaeII ACGT 4 cut(s) 191, 213, 1060, 1546
MaeIII GTNAC 4 cut(s) 192, 1111, 1500, 1542
MboII GAAGA 7 cut(s) 85, 191, 260, 449, 911, 1415, 1892
MfeI CAATTG 1 cut(s) 561
MflI RGATCY 5 cut(s) 83, 546, 688, 1525, 1625
MhlI GDGCHC 1 cut(s) 942
MlsI TGGCCA 2 cut(s) 236, 723
MluCI AATT 7 cut(s) 238, 320, 339, 561, 909, 1221, 1618
MluNI TGGCCA 2 cut(s) 236, 723
MlyI GAGTC 4 cut(s) 365, 776, 1388, 1443
MmeI TCCRAC 2 cut(s) 267, 1477
Mox20I TGGCCA 2 cut(s) 236, 723
Mph1103I ATGCAT 1 cut(s) 131
MreI CGCCGGCG 1 cut(s) 260
MroNI GCCGGC 1 cut(s) 260
MroXI GAANNNNTTC 2 cut(s) 183, 885
MscI TGGCCA 2 cut(s) 236, 723
MseI TTAA 7 cut(s) 200, 1016, 1086, 1184, 1217, 1287, 1389
MslI CAYNNNNRTG 2 cut(s) 124, 1549
Msp20I TGGCCA 2 cut(s) 236, 723
MspA1I CMGCKG 1 cut(s) 62
MspCI CTTAAG 1 cut(s) 1183
MspI CCGG 2 cut(s) 261, 1109
MspR9I CCNGG 3 cut(s) 608, 999, 1095
MunI CAATTG 1 cut(s) 561
Mva1269I GAATGC 1 cut(s) 372
MvaI CCWGG 3 cut(s) 608, 999, 1095
MvnI CGCG 1 cut(s) 789
MwoI GCNNNNNNNGC 8 cut(s) 266, 275, 566, 806, 875, 937, 1254, 1666
NaeI GCCGGC 1 cut(s) 262
NgoMIV GCCGGC 1 cut(s) 260
NlaIII CATG 9 cut(s) 30, 688, 728, 753, 809, 977, 1443, 1618, 1886
NlaIV GGNNCC 3 cut(s) 85, 1527, 1561
NmuCI GTSAC 2 cut(s) 1500, 1542
NsiI ATGCAT 1 cut(s) 131
NspI RCATGY 2 cut(s) 809, 977
PaeI GCATGC 2 cut(s) 809, 977
PagI TCATGA 1 cut(s) 1614
PasI CCCWGGG 1 cut(s) 998
PceI AGGCCT 1 cut(s) 1918
PciSI GCTCTTC 1 cut(s) 174
PctI GAATGC 1 cut(s) 372
PdiI GCCGGC 1 cut(s) 262
PdmI GAANNNNTTC 2 cut(s) 183, 885
PfeI GAWTC 8 cut(s) 140, 173, 478, 536, 728, 816, 1306, 1678
PflMI CCANNNNNTGG 1 cut(s) 1316
PkrI GCNGC 6 cut(s) 277, 280, 504, 555, 601, 952
PleI GAGTC 4 cut(s) 364, 776, 1388, 1443
PmaCI CACGTG 1 cut(s) 1547
PmlI CACGTG 1 cut(s) 1547
PpsI GAGTC 4 cut(s) 364, 776, 1388, 1443
Ppu21I YACGTR 1 cut(s) 1547
Psp6I CCWGG 3 cut(s) 606, 997, 1093
PspCI CACGTG 1 cut(s) 1547
PspFI CCCAGC 2 cut(s) 1189, 1401
PspGI CCWGG 3 cut(s) 606, 997, 1093
PspN4I GGNNCC 3 cut(s) 85, 1527, 1561
PsuI RGATCY 5 cut(s) 83, 546, 688, 1525, 1625
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 4 cut(s) 642, 1276, 1296, 1364
RsaNI GTAC 4 cut(s) 641, 1275, 1295, 1363
RseI CAYNNNNRTG 2 cut(s) 124, 1549
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 7 cut(s) 200, 1016, 1086, 1184, 1217, 1287, 1389
SatI GCNGC 6 cut(s) 276, 279, 503, 554, 600, 951
ScaI AGTACT 1 cut(s) 1364
SchI GAGTC 4 cut(s) 365, 776, 1388, 1443
ScrFI CCNGG 3 cut(s) 608, 999, 1095
SduI GDGCHC 1 cut(s) 942
SexAI ACCWGGT 1 cut(s) 606
SfaNI GCATC 3 cut(s) 138, 724, 1114
SfcI CTRYAG 2 cut(s) 873, 1467
SgrAI CRCCGGYG 1 cut(s) 260
SmiMI CAYNNNNRTG 2 cut(s) 124, 1549
SmlI CTYRAG 1 cut(s) 1183
SmoI CTYRAG 1 cut(s) 1183
SphI GCATGC 2 cut(s) 809, 977
Sse9I AATT 7 cut(s) 238, 320, 339, 561, 909, 1221, 1618
SseBI AGGCCT 1 cut(s) 1918
SsiI CCGC 5 cut(s) 98, 278, 787, 1211, 1755
SspI AATATT 2 cut(s) 829, 884
SspMI CTAG 2 cut(s) 405, 932
StuI AGGCCT 1 cut(s) 1918
StyD4I CCNGG 3 cut(s) 606, 997, 1093
TaaI ACNGT 8 cut(s) 109, 198, 1036, 1117, 1418, 1500, 1763, 1826
TaiI ACGT 4 cut(s) 194, 216, 1063, 1549
TaqI TCGA 4 cut(s) 19, 389, 481, 1654
TasI AATT 7 cut(s) 238, 320, 339, 561, 909, 1221, 1618
TatI WGTACW 2 cut(s) 1294, 1362
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 8 cut(s) 140, 173, 478, 536, 728, 816, 1306, 1678
Tru1I TTAA 7 cut(s) 200, 1016, 1086, 1184, 1217, 1287, 1389
Tru9I TTAA 7 cut(s) 200, 1016, 1086, 1184, 1217, 1287, 1389
TscAI CASTG 3 cut(s) 972, 1321, 1339
TseFI GTSAC 2 cut(s) 1500, 1542
TseI GCWGC 5 cut(s) 275, 502, 553, 599, 950
Tsp45I GTSAC 2 cut(s) 1500, 1542
TspDTI ATGAA 8 cut(s) 450, 621, 1140, 1166, 1428, 1525, 1631, 1818
TspGWI ACGGA 1 cut(s) 559
TspRI CASTG 3 cut(s) 972, 1321, 1339
Van91I CCANNNNNTGG 1 cut(s) 1316
Vha464I CTTAAG 1 cut(s) 1183
XagI CCTNNNNNAGG 1 cut(s) 1483
XapI RAATTY 2 cut(s) 909, 1618
XceI RCATGY 2 cut(s) 809, 977
XmnI GAANNNNTTC 2 cut(s) 183, 885
XspI CTAG 2 cut(s) 405, 932
ZrmI AGTACT 1 cut(s) 1364
Zsp2I ATGCAT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.