FvH4_5g24781

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000147
Physical Location & Seq
Reverse (-)
16104199 .. 16105213
1015 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24781.t1

Sequence Viewer

Length: 825 bp
ATGGCTGGCCAGATGCAGCCACGGGTCCACGATGAGGCGCTTATCTTGGAATTGTCAAGCTTCATTCTGATCACCACTTCATTGTTAACCCCATTGGGTAGAGCAGTGGTGGACTGGCCCTTTTTTGGAACAATTTTGTTCCAGTCTCCAGCATCTTCGATGTACGGGAACCCACATGTGAATCAGAAGAATGTATTTTGGGGTTCTTTACACTCCTCTTTCATTTCTCTTTCGTCTCCCTGGCTTTGTTTGGGAGACTTCAATGAAATTCTATGGCTTCATGAGAAGTGGGGCGGTCTCCCTCAACCGAGATGGAGACTTCAGTTGTTTCGTGATTTCATTGATCGTTATTGCCGTCTTCTGGACCTCCACTTCCAGGGCCCGAACTTCACATGGTTTTGTAAACAAAATGGAAAAATCGTCATCAAAGAACGGTTGGATCGAGCCTTGGCAAACCAGTGTTGGATTGCTCACCAACCTTGCACACAGGTGTTCCATTTACCCTTATTGGGATCGGATCATCGTCCAATCTTACTCGATACAAATCCAAAGGAGACAAGAGGGCCACCCATATTCAGATTTGAACACTTATGGACCTCTCATCCTGCCAGCTTTGATGTTGTCAAATCCAACTGGAATTGCGACAGTATGAGTGATCCTTGTTTAACTTGGGTGCAAAATCTCCAGTCATGCAACTTGGCTCTCACCACCTGGGCAAGAGCTACATTCCCAAACTTTGGTAAGCAGATCAGCGAAAGTCAAGAAGAAATTGAGAAAGCAATAGCAACTAACAGTGATGCAGCACAGAACCATATCCACCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

275

Amino Acids

31.52

Weight (kDa)

6.62

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 737
AciI CCGC 1 cut(s) 294
AclWI GGATC 4 cut(s) 447, 520, 525, 650
AcoI YGGCCR 1 cut(s) 7
AcsI RAATTY 1 cut(s) 267
AcuI CTGAAG 1 cut(s) 305
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 6 cut(s) 34, 125, 361, 376, 509, 737
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 2 cut(s) 262, 584
AjnI CCWGG 3 cut(s) 239, 375, 710
AleI CACNNNNGTG 1 cut(s) 488
AluBI AGCT 3 cut(s) 60, 612, 722
AluI AGCT 3 cut(s) 60, 612, 722
Alw26I GTCTC 6 cut(s) 150, 240, 249, 302, 310, 548
AlwI GGATC 4 cut(s) 447, 520, 525, 650
AoxI GGCC 4 cut(s) 7, 116, 379, 563
ApaI GGGCCC 1 cut(s) 383
ApeKI GCWGC 2 cut(s) 16, 800
ApoI RAATTY 1 cut(s) 267
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 7 cut(s) 25, 117, 364, 379, 380, 563, 594
AsuHPI GGTGA 3 cut(s) 64, 464, 697
AvaII GGWCC 3 cut(s) 25, 364, 594
BaeGI GKGCMC 1 cut(s) 383
BalI TGGCCA 1 cut(s) 9
BanII GRGCYC 1 cut(s) 383
BbsI GAAGAC 1 cut(s) 350
BbvI GCAGC 2 cut(s) 28, 812
BccI CCATC 1 cut(s) 306
BceAI ACGGC 1 cut(s) 339
BciT130I CCWGG 3 cut(s) 241, 377, 712
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 6 cut(s) 150, 240, 249, 302, 310, 548
BfoI RGCGCY 1 cut(s) 41
BisI GCNGC 2 cut(s) 17, 801
BlsI GCNGC 2 cut(s) 18, 802
Bme1390I CCNGG 3 cut(s) 241, 377, 712
Bme18I GGWCC 3 cut(s) 25, 364, 594
BmgT120I GGNCC 7 cut(s) 25, 117, 364, 379, 380, 563, 594
BmiI GGNNCC 3 cut(s) 26, 170, 381
BmrFI CCNGG 3 cut(s) 241, 377, 712
BmsI GCATC 3 cut(s) 3, 161, 787
BpiI GAAGAC 1 cut(s) 350
BpmI CTGGAG 2 cut(s) 132, 668
BsaBI GATNNNNATC 1 cut(s) 543
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 5 cut(s) 20, 239, 376, 447, 711
Bsc4I CCNNNNNNNGG 6 cut(s) 34, 125, 361, 376, 509, 737
Bse1I ACTGG 5 cut(s) 119, 142, 457, 638, 685
Bse8I GATNNNNATC 1 cut(s) 543
BseBI CCWGG 3 cut(s) 241, 377, 712
BseDI CCNNGG 5 cut(s) 20, 239, 376, 447, 711
BseGI GGATG 1 cut(s) 601
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 6 cut(s) 34, 125, 361, 376, 509, 737
BseNI ACTGG 5 cut(s) 119, 142, 457, 638, 685
BseRI GAGGAG 1 cut(s) 205
BseSI GKGCMC 1 cut(s) 383
BseXI GCAGC 2 cut(s) 28, 812
BshFI GGCC 4 cut(s) 9, 118, 381, 565
BslI CCNNNNNNNGG 6 cut(s) 34, 125, 361, 376, 509, 737
BsmAI GTCTC 6 cut(s) 150, 240, 249, 302, 310, 548
BsmBI CGTCTC 1 cut(s) 240
BsnI GGCC 4 cut(s) 9, 118, 381, 565
Bso31I GGTCTC 1 cut(s) 302
Bsp120I GGGCCC 1 cut(s) 379
Bsp1286I GDGCHC 1 cut(s) 383
Bsp143I GATC 7 cut(s) 69, 343, 439, 512, 517, 655, 747
BspACI CCGC 1 cut(s) 294
BspANI GGCC 4 cut(s) 9, 118, 381, 565
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 3 cut(s) 26, 170, 381
BspPI GGATC 4 cut(s) 447, 520, 525, 650
BspTNI GGTCTC 1 cut(s) 302
BsrI ACTGG 5 cut(s) 119, 142, 457, 638, 685
BssECI CCNNGG 5 cut(s) 20, 239, 376, 447, 711
BssMI GATC 7 cut(s) 69, 343, 439, 512, 517, 655, 747
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 3 cut(s) 241, 377, 712
Bst4CI ACNGT 3 cut(s) 435, 647, 794
BstC8I GCNNGC 2 cut(s) 7, 610
BstDSI CCRYGG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 601
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 7 cut(s) 72, 346, 442, 515, 520, 658, 750
BstMAI GTCTC 6 cut(s) 150, 240, 249, 302, 310, 548
BstMBI GATC 7 cut(s) 69, 343, 439, 512, 517, 655, 747
BstNI CCWGG 3 cut(s) 241, 377, 712
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 3 cut(s) 239, 375, 710
BstSLI GKGCMC 1 cut(s) 383
BstV1I GCAGC 2 cut(s) 28, 812
BstV2I GAAGAC 1 cut(s) 350
BsuRI GGCC 4 cut(s) 9, 118, 381, 565
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 601
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 3 cut(s) 111, 464, 799
Cac8I GCNNGC 2 cut(s) 7, 610
CciI TCATGA 1 cut(s) 280
CfoI GCGC 1 cut(s) 40
Cfr13I GGNCC 7 cut(s) 25, 117, 364, 379, 380, 563, 594
Csp6I GTAC 1 cut(s) 163
CviAII CATG 4 cut(s) 176, 281, 393, 690
CviQI GTAC 1 cut(s) 163
DpnI GATC 7 cut(s) 71, 345, 441, 514, 519, 657, 749
DpnII GATC 7 cut(s) 69, 343, 439, 512, 517, 655, 747
EaeI YGGCCR 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 383
Eco31I GGTCTC 1 cut(s) 302
Eco47I GGWCC 3 cut(s) 25, 364, 594
Eco57I CTGAAG 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 379
EcoRII CCWGG 3 cut(s) 239, 375, 710
EcoT14I CCWWGG 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 447
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 4 cut(s) 179, 284, 396, 693
FaiI YATR 9 cut(s) 177, 274, 282, 394, 572, 592, 650, 691, 813
FatI CATG 4 cut(s) 175, 280, 392, 689
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 17, 801
FokI GGATG 1 cut(s) 588
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 2 cut(s) 17, 801
GlaI GCGC 1 cut(s) 39
GluI GCNGC 2 cut(s) 17, 801
GsuI CTGGAG 2 cut(s) 132, 668
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 4 cut(s) 9, 118, 381, 565
HhaI GCGC 1 cut(s) 40
Hin1II CATG 4 cut(s) 179, 284, 396, 693
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 1 cut(s) 181
HpaI GTTAAC 1 cut(s) 87
HphI GGTGA 3 cut(s) 64, 464, 697
Hpy166II GTNNAC 4 cut(s) 28, 87, 112, 404
Hpy188I TCNGA 4 cut(s) 69, 186, 517, 578
Hpy188III TCNNGA 4 cut(s) 281, 332, 362, 761
Hpy8I GTNNAC 4 cut(s) 28, 87, 112, 404
HpyCH4III ACNGT 3 cut(s) 435, 647, 794
HpyCH4V TGCA 5 cut(s) 16, 483, 676, 693, 800
Hsp92II CATG 4 cut(s) 179, 284, 396, 693
HspAI GCGC 1 cut(s) 38
Ksp22I TGATCA 1 cut(s) 69
KspAI GTTAAC 1 cut(s) 87
Kzo9I GATC 7 cut(s) 69, 343, 439, 512, 517, 655, 747
Lsp1109I GCAGC 2 cut(s) 28, 812
LweI GCATC 3 cut(s) 3, 161, 787
MalI GATC 7 cut(s) 71, 345, 441, 514, 519, 657, 749
MboI GATC 7 cut(s) 69, 343, 439, 512, 517, 655, 747
MboII GAAGA 4 cut(s) 147, 199, 350, 776
MhlI GDGCHC 1 cut(s) 383
MlsI TGGCCA 1 cut(s) 9
MluCI AATT 5 cut(s) 50, 132, 267, 637, 768
MluNI TGGCCA 1 cut(s) 9
MmeI TCCRAC 3 cut(s) 417, 443, 654
MnlI CCTC 6 cut(s) 28, 226, 312, 377, 554, 607
Mox20I TGGCCA 1 cut(s) 9
MscI TGGCCA 1 cut(s) 9
MseI TTAA 2 cut(s) 86, 665
MslI CAYNNNNRTG 1 cut(s) 488
Msp20I TGGCCA 1 cut(s) 9
MspR9I CCNGG 3 cut(s) 241, 377, 712
MvaI CCWGG 3 cut(s) 241, 377, 712
NdeII GATC 7 cut(s) 69, 343, 439, 512, 517, 655, 747
NlaIII CATG 4 cut(s) 179, 284, 396, 693
NlaIV GGNNCC 3 cut(s) 26, 170, 381
NspI RCATGY 1 cut(s) 179
OliI CACNNNNGTG 1 cut(s) 488
PagI TCATGA 1 cut(s) 280
PciI ACATGT 1 cut(s) 175
PcsI WCGNNNNNNNCGW 2 cut(s) 352, 439
PfeI GAWTC 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 737
PkrI GCNGC 2 cut(s) 18, 802
PscI ACATGT 1 cut(s) 175
Psp6I CCWGG 3 cut(s) 239, 375, 710
PspGI CCWGG 3 cut(s) 239, 375, 710
PspN4I GGNNCC 3 cut(s) 26, 170, 381
PspOMI GGGCCC 1 cut(s) 379
PspPI GGNCC 7 cut(s) 25, 117, 364, 379, 380, 563, 594
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 2 cut(s) 86, 665
SatI GCNGC 2 cut(s) 17, 801
Sau3AI GATC 7 cut(s) 69, 343, 439, 512, 517, 655, 747
Sau96I GGNCC 7 cut(s) 25, 117, 364, 379, 380, 563, 594
ScrFI CCNGG 3 cut(s) 241, 377, 712
SduI GDGCHC 1 cut(s) 383
SetI ASST 8 cut(s) 62, 369, 481, 492, 599, 614, 713, 724
SfaNI GCATC 3 cut(s) 3, 161, 787
SinI GGWCC 3 cut(s) 25, 364, 594
SmiMI CAYNNNNRTG 1 cut(s) 488
Sse9I AATT 5 cut(s) 50, 132, 267, 637, 768
SsiI CCGC 1 cut(s) 294
StyD4I CCNGG 3 cut(s) 239, 375, 710
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 3 cut(s) 435, 647, 794
TaqI TCGA 3 cut(s) 158, 442, 537
TasI AATT 5 cut(s) 50, 132, 267, 637, 768
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 2 cut(s) 86, 665
Tru9I TTAA 2 cut(s) 86, 665
TscAI CASTG 3 cut(s) 111, 464, 799
TseI GCWGC 2 cut(s) 16, 800
TspDTI ATGAA 6 cut(s) 52, 69, 211, 269, 279, 328
TspRI CASTG 3 cut(s) 111, 464, 799
Van91I CCANNNNNTGG 1 cut(s) 737
VpaK11BI GGWCC 3 cut(s) 25, 364, 594
XapI RAATTY 1 cut(s) 267
XceI RCATGY 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.