RLG00000035870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000147
Physical Location & Seq
Reverse (-)
72935368 .. 72936888
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035870

Sequence Viewer

Length: 768 bp
ATGAGACGTACATGCCCACCCCACCCATTATCTCCTCCCCCTCTAGGCCCAAATCCTGAGGCTAACAAGATGTCAATTCTGGGCAGGCCCAATGATACCACCTATCTCTGTGACTCGAGAAAAGGAAAAATTCCTGTCCAGCCCTCTTGGAAGCAGGTGGGCTCCGACAACCTTAACTCCCTACCTTCAAGGGGTAGAGGTCGTATTACTAGGGGTAGTAGAGCAGGAGTTAACTCCCCAATTATTAGAAGAGGCCTCTACAAGCTAAGAAGCAACTCGATTAAAAGAATATTTGATTGCCTACCAAGCTCAGTCCGTGATATTGGGGAACTCCAAGAAATAAGGGTGGAAATTCTGGATGACTCGTCGGAGCCAAGTTTGGACGATCCTTCTCTTTCAAATGATCTGGAGGGACACTCTACTCTTCAGGGCGTTGGACCCAAGTACACATTGGAGAACAGAAGAGTCAATGCAAAAGAGGTAATTCGGGAACGTCTGGATAGGGTAATTGGAAATGGTAATTCTTTAAGCCTTTGGCATGATTACGCTGTCAAGCATGAACCGAGAATTGGATTAGACCACTGCCCCTGGTTTTCTACTCACACCCCCGTATCCCCAAAGGACCTAGACCTTTCAGGTTTGAAGCTAGCTGTGCTGACAACCCAGATTGTGAGAATATCATTGGCAGTTGTTGGCTCTCTATCAGCGACAAAGACCCTATGGTGCTCTGGGAATCCAACCTCAATTCATGTAAAAGGAATCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.07

Weight (kDa)

9.61

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 145
Acc36I ACCTGC 1 cut(s) 145
AclWI GGATC 1 cut(s) 380
AcsI RAATTY 2 cut(s) 129, 351
AcuI CTGAAG 1 cut(s) 410
AfaI GTAC 2 cut(s) 10, 446
AfiI CCNNNNNNNGG 3 cut(s) 44, 191, 569
AgsI TTSAA 3 cut(s) 189, 399, 643
AjnI CCWGG 1 cut(s) 587
AjuI GAANNNNNNNTTGG 2 cut(s) 552, 584
AluBI AGCT 4 cut(s) 265, 309, 646, 650
AluI AGCT 4 cut(s) 265, 309, 646, 650
Alw21I GWGCWC 1 cut(s) 728
AlwI GGATC 1 cut(s) 380
Ama87I CYCGRG 1 cut(s) 115
AoxI GGCC 3 cut(s) 46, 86, 253
ApoI RAATTY 2 cut(s) 129, 351
AspS9I GGNCC 4 cut(s) 47, 87, 437, 622
AsuNHI GCTAGC 1 cut(s) 646
AvaI CYCGRG 1 cut(s) 115
AvaII GGWCC 2 cut(s) 437, 622
AxyI CCTNAGG 1 cut(s) 57
BaeI ACNNNNGTAYC 2 cut(s) 594, 627
BanII GRGCYC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 728
BciT130I CCWGG 1 cut(s) 589
BciVI GTATCC 1 cut(s) 622
BfaI CTAG 4 cut(s) 44, 210, 626, 647
BfuAI ACCTGC 1 cut(s) 145
BfuI GTATCC 1 cut(s) 622
Bme1390I CCNGG 1 cut(s) 589
Bme18I GGWCC 2 cut(s) 437, 622
BmeT110I CYCGRG 1 cut(s) 115
BmgT120I GGNCC 4 cut(s) 47, 87, 437, 622
BmiI GGNNCC 3 cut(s) 163, 372, 439
BmrFI CCNGG 1 cut(s) 589
BmtI GCTAGC 1 cut(s) 650
BplI GAGNNNNNCTC 2 cut(s) 401, 433
BpmI CTGGAG 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 587
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 191, 569
Bse21I CCTNAGG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 589
BseDI CCNNGG 1 cut(s) 587
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 3 cut(s) 44, 191, 569
BseMII CTCAG 2 cut(s) 48, 324
BseRI GAGGAG 1 cut(s) 24
BshFI GGCC 3 cut(s) 48, 88, 255
BsiHKAI GWGCWC 1 cut(s) 728
BsiHKCI CYCGRG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 426
BslI CCNNNNNNNGG 3 cut(s) 44, 191, 569
BsmFI GGGAC 1 cut(s) 426
BsnI GGCC 3 cut(s) 48, 88, 255
BsoBI CYCGRG 1 cut(s) 115
Bsp1286I GDGCHC 2 cut(s) 164, 728
Bsp143I GATC 2 cut(s) 385, 403
BspANI GGCC 3 cut(s) 48, 88, 255
BspCNI CTCAG 2 cut(s) 49, 323
BspLI GGNNCC 3 cut(s) 163, 372, 439
BspMI ACCTGC 1 cut(s) 145
BspOI GCTAGC 1 cut(s) 650
BspPI GGATC 1 cut(s) 380
BssECI CCNNGG 1 cut(s) 587
BssMI GATC 2 cut(s) 385, 403
Bst2UI CCWGG 1 cut(s) 589
Bst6I CTCTTC 3 cut(s) 244, 429, 457
BstC8I GCNNGC 2 cut(s) 86, 648
BstDEI CTNAG 3 cut(s) 57, 266, 310
BstF5I GGATG 1 cut(s) 364
BstKTI GATC 2 cut(s) 388, 406
BstMBI GATC 2 cut(s) 385, 403
BstMWI GCNNNNNNNGC 2 cut(s) 306, 652
BstNI CCWGG 1 cut(s) 589
BstNSI RCATGY 1 cut(s) 15
BstSCI CCNGG 1 cut(s) 587
Bsu36I CCTNAGG 1 cut(s) 57
BsuI GTATCC 1 cut(s) 622
BsuRI GGCC 3 cut(s) 48, 88, 255
BtsCI GGATG 1 cut(s) 364
BtsI GCAGTG 1 cut(s) 580
BtsIMutI CAGTG 1 cut(s) 580
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 2 cut(s) 86, 648
Cfr13I GGNCC 4 cut(s) 47, 87, 437, 622
Csp6I GTAC 2 cut(s) 9, 445
CviAII CATG 4 cut(s) 12, 539, 557, 749
CviQI GTAC 2 cut(s) 9, 445
DdeI CTNAG 3 cut(s) 57, 266, 310
DpnI GATC 2 cut(s) 387, 405
DpnII GATC 2 cut(s) 385, 403
Eam1104I CTCTTC 3 cut(s) 244, 429, 457
EarI CTCTTC 3 cut(s) 244, 429, 457
Eco147I AGGCCT 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 437, 622
Eco57I CTGAAG 1 cut(s) 410
Eco81I CCTNAGG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 622
EcoRII CCWGG 1 cut(s) 587
EcoT38I GRGCYC 1 cut(s) 164
FaeI CATG 4 cut(s) 15, 542, 560, 752
FaiI YATR 5 cut(s) 13, 540, 558, 721, 750
FaqI GGGAC 1 cut(s) 426
FatI CATG 4 cut(s) 11, 538, 556, 748
FokI GGATG 1 cut(s) 371
FriOI GRGCYC 1 cut(s) 164
FspBI CTAG 4 cut(s) 44, 210, 626, 647
GsuI CTGGAG 1 cut(s) 428
HaeIII GGCC 3 cut(s) 48, 88, 255
Hin1II CATG 4 cut(s) 15, 542, 560, 752
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 5 cut(s) 113, 362, 465, 733, 759
HpaI GTTAAC 1 cut(s) 232
Hpy166II GTNNAC 2 cut(s) 232, 447
Hpy188I TCNGA 2 cut(s) 166, 370
Hpy188III TCNNGA 7 cut(s) 56, 117, 356, 407, 488, 497, 765
Hpy8I GTNNAC 2 cut(s) 232, 447
Hpy99I CGWCG 1 cut(s) 370
HpyAV CCTTC 2 cut(s) 195, 399
HpyCH4IV ACGT 2 cut(s) 7, 493
HpyCH4V TGCA 1 cut(s) 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 306, 652
HpyF3I CTNAG 3 cut(s) 57, 266, 310
HpySE526I ACGT 2 cut(s) 7, 493
Hsp92II CATG 4 cut(s) 15, 542, 560, 752
KspAI GTTAAC 1 cut(s) 232
Kzo9I GATC 2 cut(s) 385, 403
LmnI GCTCC 2 cut(s) 167, 370
MaeI CTAG 4 cut(s) 44, 210, 626, 647
MaeII ACGT 2 cut(s) 7, 493
MaeIII GTNAC 1 cut(s) 110
MalI GATC 2 cut(s) 387, 405
MboI GATC 2 cut(s) 385, 403
MboII GAAGA 3 cut(s) 261, 416, 474
MhlI GDGCHC 2 cut(s) 164, 728
MluCI AATT 9 cut(s) 75, 129, 240, 351, 483, 507, 520, 567, 744
MlyI GAGTC 3 cut(s) 107, 356, 474
MmeI TCCRAC 4 cut(s) 189, 348, 415, 761
MseI TTAA 4 cut(s) 174, 231, 282, 527
MspR9I CCNGG 1 cut(s) 589
MvaI CCWGG 1 cut(s) 589
MwoI GCNNNNNNNGC 2 cut(s) 306, 652
NdeII GATC 2 cut(s) 385, 403
NheI GCTAGC 1 cut(s) 646
NlaIII CATG 4 cut(s) 15, 542, 560, 752
NlaIV GGNNCC 3 cut(s) 163, 372, 439
NmuCI GTSAC 1 cut(s) 110
NspI RCATGY 1 cut(s) 15
PaeR7I CTCGAG 1 cut(s) 115
PaqCI CACCTGC 1 cut(s) 145
PceI AGGCCT 1 cut(s) 255
PfeI GAWTC 2 cut(s) 733, 759
PleI GAGTC 3 cut(s) 107, 356, 473
PpsI GAGTC 3 cut(s) 107, 356, 473
PpuMI RGGWCCY 1 cut(s) 622
Psp5II RGGWCCY 1 cut(s) 622
Psp6I CCWGG 1 cut(s) 587
PspGI CCWGG 1 cut(s) 587
PspN4I GGNNCC 3 cut(s) 163, 372, 439
PspPI GGNCC 4 cut(s) 47, 87, 437, 622
PspPPI RGGWCCY 1 cut(s) 622
RsaI GTAC 2 cut(s) 10, 446
RsaNI GTAC 2 cut(s) 9, 445
SaqAI TTAA 4 cut(s) 174, 231, 282, 527
Sau3AI GATC 2 cut(s) 385, 403
Sau96I GGNCC 4 cut(s) 47, 87, 437, 622
SchI GAGTC 3 cut(s) 107, 356, 474
ScrFI CCNGG 1 cut(s) 589
SduI GDGCHC 2 cut(s) 164, 728
Sfr274I CTCGAG 1 cut(s) 115
SinI GGWCC 2 cut(s) 437, 622
SlaI CTCGAG 1 cut(s) 115
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 9 cut(s) 75, 129, 240, 351, 483, 507, 520, 567, 744
SseBI AGGCCT 1 cut(s) 255
SspI AATATT 1 cut(s) 291
SspMI CTAG 4 cut(s) 44, 210, 626, 647
StuI AGGCCT 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 587
TaiI ACGT 2 cut(s) 10, 496
TaqI TCGA 2 cut(s) 116, 278
TasI AATT 9 cut(s) 75, 129, 240, 351, 483, 507, 520, 567, 744
TatI WGTACW 1 cut(s) 444
TfiI GAWTC 2 cut(s) 733, 759
Tru1I TTAA 4 cut(s) 174, 231, 282, 527
Tru9I TTAA 4 cut(s) 174, 231, 282, 527
TscAI CASTG 1 cut(s) 587
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 573, 737
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 1 cut(s) 587
VpaK11BI GGWCC 2 cut(s) 437, 622
XapI RAATTY 2 cut(s) 129, 351
XceI RCATGY 1 cut(s) 15
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
XhoI CTCGAG 1 cut(s) 115
XspI CTAG 4 cut(s) 44, 210, 626, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.