RchiOBHm_Chr5g0027201

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000147
Physical Location & Seq
Forward (+)
21189015 .. 21189883
869 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30675

Sequence Viewer

Length: 783 bp
ATGAACTGCATCTCTTGGAACTGTCAAGGTTTGGGTAGGTCCTTGACAGTTCAAACACTAAGGGAGATAATTCGCTCCCATGATAACAATTTTATTTTTTTGTCAGAAACACACAAAAGTGATTACTATGTGGATCGTGTGCGTCGTCAACTTGGTTACAGTAAAGGGTACAATGTGGCACCAGTGAATACAGCGGGTGGGCTAAGTCTATGGTGGAGGCCGGGATTTTTGGTAGAAGTCACTGATTTCTCTAAATATTTCATTGACACTCGCATCCGTGCTCAAGGATCGAATGAGGTCATCCGAGTTACGTGGATGTATGGTCCTCCATATGGGGATGAGAAGGCTGCATTTTGGGATTATTGGTCTAATCTGCAGATCATTAATGCTATTCCTTGGCTGGTGATTGGCGATCTTAATGAACTAGTTGAGCAGTATGAAAGAGAGGGTGGATCCCATTGGAATTCTAGTAGAAGGAGCTACTTGAGAACTTTCATCTCTTCTCATTCTCTTCTGGACCCTGGTTTCAAAGGCCAAAGATTTACTTGGGCCAGAGTGGAAGATGGAGTGACGAGGTTACAAGAGAGACTTGACCGCAGCTTGGTAAGTGAAAGTTGGCTTCTAAAGTGGCCCAATTCATGTCTCACTCACCTAGCCAGAGTGGGATTTGACCACAACCCACTATTCTTCAGTTCTGATCCCCTAGTCACAAAGAGAAAGAGCTCCTTCAAGTTTGAAGCTTATTGGGCTGAAGAGTCTGAATCCTTTCAAATCGTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos Exo_endo_phos_2

Protein Analysis

260

Amino Acids

30.4

Weight (kDa)

8.38

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 4 - 211 1.3e-12 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 178
AciI CCGC 2 cut(s) 194, 595
AclWI GGATC 5 cut(s) 141, 295, 447, 460, 692
AcsI RAATTY 1 cut(s) 463
AcuI CTGAAG 2 cut(s) 673, 771
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 2 cut(s) 332, 601
AgsI TTSAA 5 cut(s) 53, 529, 730, 737, 770
AhlI ACTAGT 1 cut(s) 424
AjnI CCWGG 1 cut(s) 520
AleI CACNNNNGTG 1 cut(s) 117
AluBI AGCT 4 cut(s) 480, 600, 723, 740
AluI AGCT 4 cut(s) 480, 600, 723, 740
Alw21I GWGCWC 2 cut(s) 283, 725
Alw26I GTCTC 2 cut(s) 580, 647
AlwI GGATC 5 cut(s) 141, 295, 447, 460, 692
AoxI GGCC 4 cut(s) 218, 532, 549, 629
ApeKI GCWGC 2 cut(s) 347, 597
ApoI RAATTY 1 cut(s) 463
AseI ATTAAT 1 cut(s) 384
Asp700I GAANNNNTTC 1 cut(s) 765
AspS9I GGNCC 5 cut(s) 39, 323, 517, 549, 630
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 2 cut(s) 415, 641
AvaII GGWCC 3 cut(s) 39, 323, 517
BamHI GGATCC 1 cut(s) 452
BanI GGYRCC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 725
Bbv12I GWGCWC 2 cut(s) 283, 725
BbvI GCAGC 2 cut(s) 334, 609
BccI CCATC 1 cut(s) 557
BciT130I CCWGG 1 cut(s) 522
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 2 cut(s) 580, 647
BcuI ACTAGT 1 cut(s) 424
BfaI CTAG 4 cut(s) 425, 468, 653, 704
BfmI CTRYAG 1 cut(s) 374
BisI GCNGC 2 cut(s) 348, 598
BlsI GCNGC 2 cut(s) 349, 599
Bme1390I CCNGG 2 cut(s) 222, 522
Bme18I GGWCC 3 cut(s) 39, 323, 517
BmgT120I GGNCC 5 cut(s) 39, 323, 517, 549, 630
BmiI GGNNCC 3 cut(s) 180, 454, 519
BmrFI CCNGG 2 cut(s) 222, 522
BmsI GCATC 2 cut(s) 18, 282
BpuEI CTTGAG 2 cut(s) 267, 505
BpuMI CCSGG 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 395, 520
Bsc4I CCNNNNNNNGG 2 cut(s) 332, 601
Bse1I ACTGG 1 cut(s) 182
BseBI CCWGG 1 cut(s) 522
BseDI CCNNGG 2 cut(s) 395, 520
BseGI GGATG 4 cut(s) 273, 300, 321, 343
BseLI CCNNNNNNNGG 2 cut(s) 332, 601
BseNI ACTGG 1 cut(s) 182
BseXI GCAGC 2 cut(s) 334, 609
BshFI GGCC 4 cut(s) 220, 534, 551, 631
BshNI GGYRCC 1 cut(s) 178
BsiHKAI GWGCWC 2 cut(s) 283, 725
BsiSI CCGG 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 332, 601
BsmAI GTCTC 2 cut(s) 580, 647
BsnI GGCC 4 cut(s) 220, 534, 551, 631
Bsp1286I GDGCHC 2 cut(s) 283, 725
Bsp143I GATC 6 cut(s) 133, 287, 378, 412, 452, 697
BspACI CCGC 2 cut(s) 194, 595
BspANI GGCC 4 cut(s) 220, 534, 551, 631
BspLI GGNNCC 3 cut(s) 180, 454, 519
BspMAI CTGCAG 1 cut(s) 378
BspPI GGATC 5 cut(s) 141, 295, 447, 460, 692
BspT107I GGYRCC 1 cut(s) 178
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 2 cut(s) 395, 520
BssMI GATC 6 cut(s) 133, 287, 378, 412, 452, 697
BssT1I CCWWGG 1 cut(s) 395
Bst2UI CCWGG 1 cut(s) 522
Bst4CI ACNGT 3 cut(s) 23, 49, 161
Bst6I CTCTTC 3 cut(s) 505, 516, 747
BstBAI YACGTR 1 cut(s) 312
BstDEI CTNAG 2 cut(s) 59, 203
BstF5I GGATG 4 cut(s) 273, 300, 321, 343
BstKTI GATC 6 cut(s) 136, 290, 381, 415, 455, 700
BstMAI GTCTC 2 cut(s) 580, 647
BstMBI GATC 6 cut(s) 133, 287, 378, 412, 452, 697
BstMWI GCNNNNNNNGC 1 cut(s) 746
BstNI CCWGG 1 cut(s) 522
BstSCI CCNGG 2 cut(s) 220, 520
BstSFI CTRYAG 1 cut(s) 374
BstV1I GCAGC 2 cut(s) 334, 609
BstX2I RGATCY 1 cut(s) 452
BstYI RGATCY 1 cut(s) 452
BsuRI GGCC 4 cut(s) 220, 534, 551, 631
BtsCI GGATG 4 cut(s) 273, 300, 321, 343
BtsIMutI CAGTG 2 cut(s) 189, 240
Cfr13I GGNCC 5 cut(s) 39, 323, 517, 549, 630
CseI GACGC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 169
CviAII CATG 2 cut(s) 80, 639
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 59, 203
DpnI GATC 6 cut(s) 135, 289, 380, 414, 454, 699
DpnII GATC 6 cut(s) 133, 287, 378, 412, 452, 697
Eam1104I CTCTTC 3 cut(s) 505, 516, 747
EarI CTCTTC 3 cut(s) 505, 516, 747
Ecl136II GAGCTC 1 cut(s) 723
Eco130I CCWWGG 1 cut(s) 395
Eco24I GRGCYC 1 cut(s) 725
Eco47I GGWCC 3 cut(s) 39, 323, 517
Eco53kI GAGCTC 1 cut(s) 723
Eco57I CTGAAG 2 cut(s) 673, 771
EcoICRI GAGCTC 1 cut(s) 723
EcoO109I RGGNCCY 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 463
EcoRII CCWGG 1 cut(s) 520
EcoT14I CCWWGG 1 cut(s) 395
EcoT38I GRGCYC 1 cut(s) 725
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 2 cut(s) 83, 642
FaiI YATR 8 cut(s) 81, 129, 211, 321, 331, 333, 438, 640
FalI AAGNNNNNCTT 6 cut(s) 529, 561, 573, 605, 710, 742
FatI CATG 2 cut(s) 79, 638
FauI CCCGC 1 cut(s) 187
FauNDI CATATG 1 cut(s) 331
Fnu4HI GCNGC 2 cut(s) 348, 598
FokI GGATG 4 cut(s) 260, 287, 328, 350
FriOI GRGCYC 1 cut(s) 725
Fsp4HI GCNGC 2 cut(s) 348, 598
FspBI CTAG 4 cut(s) 425, 468, 653, 704
GluI GCNGC 2 cut(s) 348, 598
HaeIII GGCC 4 cut(s) 220, 534, 551, 631
HapII CCGG 1 cut(s) 221
HgaI GACGC 1 cut(s) 131
Hin1II CATG 2 cut(s) 83, 642
HincII GTYRAC 1 cut(s) 149
HindII GTYRAC 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 738
HinfI GANTC 2 cut(s) 755, 761
HpaII CCGG 1 cut(s) 221
HphI GGTGA 2 cut(s) 415, 641
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 4 cut(s) 106, 305, 697, 760
Hpy188III TCNNGA 1 cut(s) 515
Hpy8I GTNNAC 1 cut(s) 149
Hpy99I CGWCG 1 cut(s) 147
HpyAV CCTTC 3 cut(s) 337, 468, 736
HpyCH4III ACNGT 3 cut(s) 23, 49, 161
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 3 cut(s) 9, 350, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 746
HpyF3I CTNAG 2 cut(s) 59, 203
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 2 cut(s) 83, 642
Kzo9I GATC 6 cut(s) 133, 287, 378, 412, 452, 697
LmnI GCTCC 3 cut(s) 80, 477, 728
LpnPI CCDG 8 cut(s) 195, 234, 386, 500, 507, 534, 565, 670
Lsp1109I GCAGC 2 cut(s) 334, 609
LweI GCATC 2 cut(s) 18, 282
MaeI CTAG 4 cut(s) 425, 468, 653, 704
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 6 cut(s) 155, 238, 307, 568, 576, 706
MalI GATC 6 cut(s) 135, 289, 380, 414, 454, 699
MboI GATC 6 cut(s) 133, 287, 378, 412, 452, 697
MboII GAAGA 5 cut(s) 492, 503, 572, 679, 764
MflI RGATCY 1 cut(s) 452
MhlI GDGCHC 2 cut(s) 283, 725
MluCI AATT 4 cut(s) 69, 88, 463, 634
MlyI GAGTC 1 cut(s) 764
MnlI CCTC 5 cut(s) 210, 289, 336, 439, 567
MroXI GAANNNNTTC 1 cut(s) 765
MseI TTAA 2 cut(s) 384, 417
MslI CAYNNNNRTG 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 2 cut(s) 222, 522
MvaI CCWGG 1 cut(s) 522
MwoI GCNNNNNNNGC 1 cut(s) 746
NciI CCSGG 1 cut(s) 222
NdeI CATATG 1 cut(s) 331
NdeII GATC 6 cut(s) 133, 287, 378, 412, 452, 697
NlaIII CATG 2 cut(s) 83, 642
NlaIV GGNNCC 3 cut(s) 180, 454, 519
NmuCI GTSAC 3 cut(s) 238, 568, 706
OliI CACNNNNGTG 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 765
PfeI GAWTC 1 cut(s) 761
PkrI GCNGC 2 cut(s) 349, 599
PleI GAGTC 1 cut(s) 763
PpsI GAGTC 1 cut(s) 763
Ppu21I YACGTR 1 cut(s) 312
PpuMI RGGWCCY 1 cut(s) 39
PshBI ATTAAT 1 cut(s) 384
Psp124BI GAGCTC 1 cut(s) 725
Psp5II RGGWCCY 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 520
PspGI CCWGG 1 cut(s) 520
PspN4I GGNNCC 3 cut(s) 180, 454, 519
PspPI GGNCC 5 cut(s) 39, 323, 517, 549, 630
PspPPI RGGWCCY 1 cut(s) 39
PstI CTGCAG 1 cut(s) 378
PsuI RGATCY 1 cut(s) 452
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 117
SacI GAGCTC 1 cut(s) 725
SaqAI TTAA 2 cut(s) 384, 417
SatI GCNGC 2 cut(s) 348, 598
Sau3AI GATC 6 cut(s) 133, 287, 378, 412, 452, 697
Sau96I GGNCC 5 cut(s) 39, 323, 517, 549, 630
SchI GAGTC 1 cut(s) 764
ScrFI CCNGG 2 cut(s) 222, 522
SduI GDGCHC 2 cut(s) 283, 725
SfaNI GCATC 2 cut(s) 18, 282
SfcI CTRYAG 1 cut(s) 374
SinI GGWCC 3 cut(s) 39, 323, 517
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 2 cut(s) 282, 484
SmoI CTYRAG 2 cut(s) 282, 484
SpeI ACTAGT 1 cut(s) 424
Sse9I AATT 4 cut(s) 69, 88, 463, 634
SsiI CCGC 2 cut(s) 194, 595
SspI AATATT 1 cut(s) 257
SspMI CTAG 4 cut(s) 425, 468, 653, 704
SstI GAGCTC 1 cut(s) 725
StyD4I CCNGG 2 cut(s) 220, 520
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 3 cut(s) 23, 49, 161
TaiI ACGT 1 cut(s) 314
TaqI TCGA 1 cut(s) 290
TasI AATT 4 cut(s) 69, 88, 463, 634
TfiI GAWTC 1 cut(s) 761
Tru1I TTAA 2 cut(s) 384, 417
Tru9I TTAA 2 cut(s) 384, 417
TscAI CASTG 2 cut(s) 189, 247
TseFI GTSAC 3 cut(s) 238, 568, 706
TseI GCWGC 2 cut(s) 347, 597
Tsp45I GTSAC 3 cut(s) 238, 568, 706
TspDTI ATGAA 6 cut(s) 17, 250, 435, 453, 484, 627
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 2 cut(s) 189, 247
VpaK11BI GGWCC 3 cut(s) 39, 323, 517
VspI ATTAAT 1 cut(s) 384
XapI RAATTY 1 cut(s) 463
XmnI GAANNNNTTC 1 cut(s) 765
XspI CTAG 4 cut(s) 425, 468, 653, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.