Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000147

Physical Location & Seq

Genomic Coordinates Forward (+)

45883529 .. 45897943

Gene Structure 14415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG357700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGAACCTCATGCATACCCTGAGGCATATTTTCGGAAAGGTGGTCTGAAATTTTATCGTTCTGGCCCATGGAATGGCCTAAGATTCAGTGGCGCAGCAGCTCTAAGGCCTAATCCAATTTATAGTTTTGATTTTGTGCATAATGATGATGAAGTTTACTACATGTACAAACTTCAAAGCAAGTCTGTAATTTCAATCGTGGTCTTAAATGGAACCACGAGTACGCGCCATCGCCTTACATGGATTGAAGCAGAGCAAACTTGGAGGGCCTATGCAATAGTGCCTAGAGATTTCTGTGATCAATATGGCCTCTGTGGAGCAAATGCAGAGTGTATCGTTAGTAACAGTCCATCTCCTATGACAACAAGGATGTTGCCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

127

Amino Acids

14.54

Weight (kDa)

8.81

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	19 - 118	1.6e-22	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000147)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica	Prupe.2G036900_v2.0.a1
pyrus_communis	pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis	RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata	RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora	Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii	Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa	Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha	Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana	Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	74
AccII	CGCG	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	50
AfaI	GTAC	2 cut(s)	167, 223
AfiI	CCNNNNNNNGG	1 cut(s)	74
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	3 cut(s)	176, 195, 248
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
AoxI	GGCC	5 cut(s)	64, 76, 107, 267, 307
ApeKI	GCWGC	2 cut(s)	95, 98
ApoI	RAATTY	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	95, 228
AspS9I	GGNCC	2 cut(s)	65, 267
AxyI	CCTNAGG	1 cut(s)	21
BauI	CACGAG	1 cut(s)	217
BbvI	GCAGC	2 cut(s)	107, 110
BccI	CCATC	2 cut(s)	237, 358
BclI	TGATCA	1 cut(s)	298
BfaI	CTAG	1 cut(s)	285
BisI	GCNGC	2 cut(s)	96, 99
BlsI	GCNGC	2 cut(s)	97, 100
BmgT120I	GGNCC	2 cut(s)	65, 267
BmiI	GGNNCC	2 cut(s)	6, 214
BsaJI	CCNNGG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse21I	CCTNAGG	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	12
BseXI	GCAGC	2 cut(s)	107, 110
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	5 cut(s)	66, 78, 109, 269, 309
BslI	CCNNNNNNNGG	1 cut(s)	74
BsnI	GGCC	5 cut(s)	66, 78, 109, 269, 309
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	298
Bsp19I	CCATGG	1 cut(s)	68
BspANI	GGCC	5 cut(s)	66, 78, 109, 269, 309
BspCNI	CTCAG	1 cut(s)	13
BspFNI	CGCG	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	6, 214
BsrGI	TGTACA	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	1 cut(s)	298
BssSI	CACGAG	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	68
Bst2BI	CACGAG	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	347
BstAUI	TGTACA	1 cut(s)	165
BstDEI	CTNAG	3 cut(s)	21, 80, 104
BstDSI	CCRYGG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	375
BstFNI	CGCG	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	95, 228
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	166
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	107, 110
Bsu36I	CCTNAGG	1 cut(s)	21
BsuRI	GGCC	5 cut(s)	66, 78, 109, 269, 309
BtgI	CCRYGG	1 cut(s)	68
BtgZI	GCGATG	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	94
CfoI	GCGC	2 cut(s)	95, 228
Cfr13I	GGNCC	2 cut(s)	65, 267
Csp6I	GTAC	2 cut(s)	166, 222
CviAII	CATG	4 cut(s)	11, 69, 163, 240
CviJI	RGCY	6 cut(s)	66, 78, 101, 109, 269, 309
CviKI_1	RGCY	6 cut(s)	66, 78, 101, 109, 269, 309
CviQI	GTAC	2 cut(s)	166, 222
DdeI	CTNAG	3 cut(s)	21, 80, 104
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	109
Eco81I	CCTNAGG	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	68
EcoT22I	ATGCAT	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	4 cut(s)	14, 72, 166, 243
FatI	CATG	4 cut(s)	10, 68, 162, 239
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	96, 99
Fsp4HI	GCNGC	2 cut(s)	96, 99
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	2 cut(s)	94, 227
GluI	GCNGC	2 cut(s)	96, 99
HaeIII	GGCC	5 cut(s)	66, 78, 109, 269, 309
HhaI	GCGC	2 cut(s)	95, 228
Hin1II	CATG	4 cut(s)	14, 72, 166, 243
Hin6I	GCGC	2 cut(s)	93, 226
HinP1I	GCGC	2 cut(s)	93, 226
HinfI	GANTC	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	36, 48
Hpy8I	GTNNAC	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4V	TGCA	4 cut(s)	14, 139, 275, 326
HpyF3I	CTNAG	3 cut(s)	21, 80, 104
Hsp92II	CATG	4 cut(s)	14, 72, 166, 243
HspAI	GCGC	2 cut(s)	93, 226
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	1 cut(s)	317
LpnPI	CCDG	2 cut(s)	33, 48
Lsp1109I	GCAGC	2 cut(s)	107, 110
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MluCI	AATT	3 cut(s)	50, 117, 189
MnlI	CCTC	4 cut(s)	16, 18, 258, 320
Mph1103I	ATGCAT	1 cut(s)	16
MseI	TTAA	1 cut(s)	206
MslI	CAYNNNNRTG	1 cut(s)	144
MvnI	CGCG	1 cut(s)	226
NcoI	CCATGG	1 cut(s)	68
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	4 cut(s)	14, 72, 166, 243
NlaIV	GGNNCC	2 cut(s)	6, 214
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	1 cut(s)	166
PceI	AGGCCT	1 cut(s)	109
PciI	ACATGT	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	84
PflMI	CCANNNNNTGG	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	97, 100
PscI	ACATGT	1 cut(s)	162
PspN4I	GGNNCC	2 cut(s)	6, 214
PspPI	GGNCC	2 cut(s)	65, 267
PsrI	GAACNNNNNNTAC	2 cut(s)	205, 237
RsaI	GTAC	2 cut(s)	167, 223
RsaNI	GTAC	2 cut(s)	166, 222
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	2 cut(s)	96, 99
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	2 cut(s)	65, 267
SetI	ASST	3 cut(s)	10, 43, 103
SmiMI	CAYNNNNRTG	1 cut(s)	144
Sse9I	AATT	3 cut(s)	50, 117, 189
SseBI	AGGCCT	1 cut(s)	109
SspMI	CTAG	1 cut(s)	285
StuI	AGGCCT	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	347
TasI	AATT	3 cut(s)	50, 117, 189
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	2 cut(s)	95, 98
TspDTI	ATGAA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	74
XapI	RAATTY	1 cut(s)	50
XceI	RCATGY	1 cut(s)	166
XspI	CTAG	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.