Rmu_sc0001669.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001669.1
OG0000147
Physical Location & Seq
Forward (+)
802 .. 4037
3236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001669.1_g000001.1.cds

Sequence Viewer

Length: 2565 bp
atggcttcacatgaccatcttgcagcaaggttggagaacacttgtcacattgacgaggttcaagacacggtgtctcttctgggagctcgcattgttgatgtcatgcccaacattggtggcataaagggggcgatcaggtcagcgtggaaggactttgatggcttcctaccgggtacatcaatgatgctcctctacatctcatttcattctgggtccaaatttctggcctcacatgccacccttcggggttatctcagtgttaaagttcgttttgattcccggaactccctacctactggcttctggctccccatctcaaagtatgaaagtatcagaccaggtgaagaaagactagagaatgtttggtatggctcttggacgaaaagaaaatccggcaaactcctcctccgttcgactttgggatgcccaccaaaaggcaatggcaccgccctagttccaggaaattcacggtccgctgacactcctaccatcctgtgccctaccaccctgaccaaggcctcacccctcttctctccccgtgaccacatggggaacccaaaggtgacagctttcccaagccctagctggttaaaggtagctgtcactaccactagaacccatgttagctgggctgagaaaaactttaggcccaatcctccaaagagccttaaaaggaaaatccctacaccaaacccaaacaactacaggcccaaaaacttgttaacccggattgatgatgccttgttttctcccaacttaagcccatccttgacccaaacaacaaactacactctttacccaaatctggcccttgccactactccagccttgcctatccccaaaacttttcaacgtgtcaaaccaccatcaaaagggaaagaacctctcctctccttgcctggttccgttttcgtcccagtcaacccccaaacccaaactccttttctcccctcctctttgcaaacctcaagtccccacttccatcattccttctcagcacaacaaaaaaacacttccttgcttaacacaaaaagacccatctcgaaaaccaattttgaattctctccccgccatcaaaaagccagacttgtctctactcctggtgatgatagttcaagtcaatcttttctccctcagccggtcctgggtgggggtggccttgaaagatataggaaaactggtcctaggcacaggacaaatggagcggcgagtgaccgatcttgcaatcgaagtgacagagcatttgggtaccatcgtgcttccaggaagagaagggtagtgtggaaacctcaacacatgatggatttctggaagggcaatcccctctccagggcggtggtgactggccgacagtcacaagtccccaatgagtacactactctcttggaactgtcagggtttagggaaggccttgacagtccaaaaattgggggacctcaaaagccccattctccatcggttattttcttatctgaaacaaagcaatctgattaccgtttaaacattctgagacgccgatttggctatcacaagggaaactcggtcccttctgtcaggactgctggtggccttgccctctggtggcggccggatgttaaggctgtccctcctcagccttggatttgtattggtgacctaaatgagttgttttcgaatgacgagaaggaagttggtatccctcttctttggaataggcctcggttcctgcaagatttcatgaactcgaattctctctttgatcttggtttttgtagccccaagtttacctgggagaacaagagagatgatggcctgatcttagagcgtttagacaaggctctgggaaattccgactggcttcaagcccttcctgactcaaaaattacccatttagctcgcaccggattggatcactgtccccttcttgtttccctcaaacctcctgctccccgaatcgtaaagcccttcaaatttgaagctgcctgggttgaaaatcctgagtgtgaagagatagttcggaatgcttgggctattggtaatgatgtcaatgcttacatgcttcttaattcaaagctttcaacttgtcaaggcagactcaaggagtggagcaagaggaaatttccaaataacaggaagttaatcaagtcccttaacaggatgctggctttgattcaagcagcctcacctattgatagaaacaaggaaagtgacattattatggaattagaaagagtttggacccttgaggaaagcttctggcaccaaaggtcaagagtaaactggctgctgaagggtgataaaaattccaagtttttccacatgactgctctccatagacaacaggttaatcgaatctcaccccttcacttgaatgatggatcttgggtttacgatgaggtcagtatccgtgcagcttttaaggactatttcagcgatctcttccaggcctcttctcctcgagatttcaacactgttttatgtaatgtgtcttcaagaacttcagcctctcataatcattacctctctaaaccttttacagtggaggaagtcatgagagccaccaaacaactaagcttttggccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

854

Amino Acids

96.52

Weight (kDa)

10.0

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1248
AccB1I GGYRCC 3 cut(s) 443, 1248, 2238
AccB7I CCANNNNNTGG 1 cut(s) 1427
AccBSI CCGCTC 1 cut(s) 1205
AciI CCGC 6 cut(s) 447, 474, 1069, 1205, 1334, 1585
AclWI GGATC 2 cut(s) 1896, 2365
AcoI YGGCCR 2 cut(s) 1345, 1586
AcsI RAATTY 8 cut(s) 218, 463, 1058, 1726, 1825, 1949, 2096, 2281
AcuI CTGAAG 2 cut(s) 2288, 2463
AcyI GRCGYC 1 cut(s) 1513
AfaI GTAC 3 cut(s) 175, 1250, 1373
AflII CTTAAG 1 cut(s) 757
AflIII ACRYGT 1 cut(s) 853
AhdI GACNNNNNGTC 1 cut(s) 70
AjuI GAANNNNNNNTTGG 4 cut(s) 927, 959, 1043, 1075
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 3 cut(s) 78, 1096, 1504
AlwI GGATC 2 cut(s) 1896, 2365
Ama87I CYCGRG 1 cut(s) 2436
ApeKI GCWGC 5 cut(s) 23, 1958, 2156, 2263, 2390
ApoI RAATTY 8 cut(s) 218, 463, 1058, 1726, 1825, 1949, 2096, 2281
ArsI GACNNNNNNTTYG 4 cut(s) 955, 987, 1226, 1258
Asp718I GGTACC 1 cut(s) 1248
AspA2I CCTAGG 1 cut(s) 1184
AsuC2I CCSGG 3 cut(s) 171, 280, 727
AsuHPI GGTGA 9 cut(s) 353, 513, 574, 1115, 1351, 1643, 2154, 2285, 2328
AsuII TTCGAA 1 cut(s) 1652
AvaI CYCGRG 1 cut(s) 2436
AvaII GGWCC 7 cut(s) 213, 471, 1141, 1181, 1433, 1543, 2217
AvrII CCTAGG 1 cut(s) 1184
BaeGI GKGCMC 1 cut(s) 500
BaeI ACNNNNGTAYC 2 cut(s) 1240, 1273
BanI GGYRCC 3 cut(s) 443, 1248, 2238
BanII GRGCYC 1 cut(s) 88
BarI GAAGNNNNNNTAC 2 cut(s) 2452, 2484
BbsI GAAGAC 1 cut(s) 2460
Bbv12I GWGCWC 1 cut(s) 88
BbvCI CCTCAGC 2 cut(s) 1134, 1611
BbvI GCAGC 5 cut(s) 35, 1945, 2168, 2250, 2402
BciVI GTATCC 2 cut(s) 1685, 2393
BcnI CCSGG 3 cut(s) 171, 280, 727
BcoDI GTCTC 3 cut(s) 78, 1096, 1504
BfaI CTAG 5 cut(s) 353, 452, 582, 612, 1185
BfmI CTRYAG 1 cut(s) 703
BfrI CTTAAG 1 cut(s) 757
BfuI GTATCC 2 cut(s) 1685, 2393
BglI GCCNNNNNGGC 1 cut(s) 1521
BisI GCNGC 7 cut(s) 24, 1206, 1586, 1959, 2157, 2264, 2391
BlnI CCTAGG 1 cut(s) 1184
BlsI GCNGC 7 cut(s) 25, 1207, 1587, 1960, 2158, 2265, 2392
Bme18I GGWCC 7 cut(s) 213, 471, 1141, 1181, 1433, 1543, 2217
BmeRI GACNNNNNGTC 1 cut(s) 70
BmeT110I CYCGRG 1 cut(s) 2436
BmrI ACTGGG 1 cut(s) 911
BmsI GCATC 4 cut(s) 174, 413, 727, 2127
BmuI ACTGGG 1 cut(s) 911
BpiI GAAGAC 1 cut(s) 2460
BpmI CTGGAG 2 cut(s) 807, 1312
Bpu10I CCTNAGC 2 cut(s) 1134, 1611
Bpu14I TTCGAA 1 cut(s) 1652
BpuEI CTTGAG 3 cut(s) 952, 2060, 2243
BpuMI CCSGG 3 cut(s) 171, 280, 727
BsaHI GRCGYC 1 cut(s) 1513
BsaJI CCNNGG 8 cut(s) 513, 1144, 1184, 1329, 1616, 1697, 1767, 1962
BsaWI WCCGGW 1 cut(s) 1880
BsaXI ACNNNNNCTCC 4 cut(s) 390, 420, 922, 952
Bse118I RCCGGY 1 cut(s) 1138
Bse1I ACTGG 6 cut(s) 301, 917, 1183, 1348, 1838, 2264
Bse3DI GCAATG 1 cut(s) 445
BseDI CCNNGG 8 cut(s) 513, 1144, 1184, 1329, 1616, 1697, 1767, 1962
BseGI GGATG 5 cut(s) 428, 489, 764, 1597, 2142
BseMI GCAATG 1 cut(s) 445
BseMII CTCAG 7 cut(s) 268, 624, 1008, 1148, 1499, 1625, 1968
BseNI ACTGG 6 cut(s) 301, 917, 1183, 1348, 1838, 2264
BseRI GAGGAG 7 cut(s) 179, 392, 395, 878, 943, 1599, 2424
BseSI GKGCMC 1 cut(s) 500
BseX3I CGGCCG 1 cut(s) 1586
BseXI GCAGC 5 cut(s) 35, 1945, 2168, 2250, 2402
BseYI CCCAGC 1 cut(s) 627
BsgI GTGCAG 1 cut(s) 2409
Bsh1285I CGRYCG 1 cut(s) 1589
BshNI GGYRCC 3 cut(s) 443, 1248, 2238
BsiEI CGRYCG 1 cut(s) 1589
BsiHKAI GWGCWC 1 cut(s) 88
BsiHKCI CYCGRG 1 cut(s) 2436
BsiSI CCGG 7 cut(s) 170, 280, 393, 727, 1139, 1589, 1881
BslFI GGGAC 8 cut(s) 899, 957, 1346, 1446, 1529, 1589, 1881, 2110
BsmAI GTCTC 3 cut(s) 78, 1096, 1504
BsmBI CGTCTC 1 cut(s) 1504
BsmFI GGGAC 8 cut(s) 899, 957, 1346, 1446, 1529, 1589, 1881, 2110
BsmI GAATGC 1 cut(s) 2005
BsoBI CYCGRG 1 cut(s) 2436
Bsp119I TTCGAA 1 cut(s) 1652
Bsp1286I GDGCHC 2 cut(s) 88, 500
Bsp143I GATC 7 cut(s) 132, 1217, 1738, 1794, 1888, 2357, 2413
BspACI CCGC 6 cut(s) 447, 474, 1069, 1205, 1334, 1585
BspCNI CTCAG 7 cut(s) 267, 625, 1007, 1147, 1500, 1624, 1969
BspHI TCATGA 2 cut(s) 1716, 2529
BspPI GGATC 2 cut(s) 1896, 2365
BspT104I TTCGAA 1 cut(s) 1652
BspT107I GGYRCC 3 cut(s) 443, 1248, 2238
BspTI CTTAAG 1 cut(s) 757
BsrBI CCGCTC 1 cut(s) 1205
BsrDI GCAATG 1 cut(s) 445
BsrFI RCCGGY 1 cut(s) 1138
BsrI ACTGG 6 cut(s) 301, 917, 1183, 1348, 1838, 2264
BssAI RCCGGY 1 cut(s) 1138
BssECI CCNNGG 8 cut(s) 513, 1144, 1184, 1329, 1616, 1697, 1767, 1962
BssMI GATC 7 cut(s) 132, 1217, 1738, 1794, 1888, 2357, 2413
BssNI GRCGYC 1 cut(s) 1513
BssT1I CCWWGG 3 cut(s) 513, 1184, 1616
Bst4CI ACNGT 9 cut(s) 70, 471, 1353, 1392, 1418, 1496, 1895, 2452, 2518
Bst6I CTCTTC 7 cut(s) 81, 533, 1262, 1686, 1980, 2423, 2434
BstACI GRCGYC 1 cut(s) 1513
BstAFI CTTAAG 1 cut(s) 757
BstBI TTCGAA 1 cut(s) 1652
BstC8I GCNNGC 3 cut(s) 88, 1876, 2142
BstDEI CTNAG 9 cut(s) 254, 633, 994, 1134, 1508, 1611, 1798, 1977, 2549
BstEII GGTNACC 1 cut(s) 1631
BstENI CCTNNNNNAGG 1 cut(s) 512
BstF5I GGATG 5 cut(s) 428, 489, 764, 1597, 2142
BstKTI GATC 7 cut(s) 135, 1220, 1741, 1797, 1891, 2360, 2416
BstMAI GTCTC 3 cut(s) 78, 1096, 1504
BstMBI GATC 7 cut(s) 132, 1217, 1738, 1794, 1888, 2357, 2413
BstMCI CGRYCG 1 cut(s) 1589
BstMWI GCNNNNNNNGC 2 cut(s) 233, 1521
BstNSI RCATGY 2 cut(s) 236, 2038
BstPI GGTNACC 1 cut(s) 1631
BstSFI CTRYAG 1 cut(s) 703
BstSLI GKGCMC 1 cut(s) 500
BstV1I GCAGC 5 cut(s) 35, 1945, 2168, 2250, 2402
BstV2I GAAGAC 1 cut(s) 2460
BstX2I RGATCY 1 cut(s) 2357
BstXI CCANNNNNNTGG 2 cut(s) 223, 1336
BstYI RGATCY 1 cut(s) 2357
BstZI CGGCCG 1 cut(s) 1586
BsuI GTATCC 2 cut(s) 1685, 2393
BtsCI GGATG 5 cut(s) 428, 489, 764, 1597, 2142
BtsIMutI CAGTG 4 cut(s) 262, 1891, 2448, 2523
Cac8I GCNNGC 3 cut(s) 88, 1876, 2142
CciI TCATGA 2 cut(s) 1716, 2529
Cfr10I RCCGGY 1 cut(s) 1138
CpoI CGGWCCG 1 cut(s) 471
CseI GACGC 1 cut(s) 1521
CsiI ACCWGGT 1 cut(s) 337
Csp6I GTAC 3 cut(s) 174, 1249, 1372
CspCI CAANNNNNGTGG 2 cut(s) 97, 132
CspI CGGWCCG 1 cut(s) 471
CviQI GTAC 3 cut(s) 174, 1249, 1372
DdeI CTNAG 9 cut(s) 254, 633, 994, 1134, 1508, 1611, 1798, 1977, 2549
DpnI GATC 7 cut(s) 134, 1219, 1740, 1796, 1890, 2359, 2415
DpnII GATC 7 cut(s) 132, 1217, 1738, 1794, 1888, 2357, 2413
DraI TTTAAA 1 cut(s) 1500
DriI GACNNNNNGTC 1 cut(s) 70
EaeI YGGCCR 2 cut(s) 1345, 1586
EagI CGGCCG 1 cut(s) 1586
Eam1104I CTCTTC 7 cut(s) 81, 533, 1262, 1686, 1980, 2423, 2434
Eam1105I GACNNNNNGTC 1 cut(s) 70
EarI CTCTTC 7 cut(s) 81, 533, 1262, 1686, 1980, 2423, 2434
Ecl136II GAGCTC 1 cut(s) 86
EclXI CGGCCG 1 cut(s) 1586
Eco130I CCWWGG 3 cut(s) 513, 1184, 1616
Eco147I AGGCCT 4 cut(s) 518, 1410, 1696, 2426
Eco24I GRGCYC 1 cut(s) 88
Eco47I GGWCC 7 cut(s) 213, 471, 1141, 1181, 1433, 1543, 2217
Eco52I CGGCCG 1 cut(s) 1586
Eco53kI GAGCTC 1 cut(s) 86
Eco57I CTGAAG 2 cut(s) 2288, 2463
Eco88I CYCGRG 1 cut(s) 2436
Eco91I GGTNACC 1 cut(s) 1631
EcoICRI GAGCTC 1 cut(s) 86
EcoNI CCTNNNNNAGG 1 cut(s) 512
EcoO109I RGGNCCY 1 cut(s) 1433
EcoO65I GGTNACC 1 cut(s) 1631
EcoRI GAATTC 2 cut(s) 1058, 1726
EcoT14I CCWWGG 3 cut(s) 513, 1184, 1616
EcoT38I GRGCYC 1 cut(s) 88
ErhI CCWWGG 3 cut(s) 513, 1184, 1616
Esp3I CGTCTC 1 cut(s) 1504
FalI AAGNNNNNCTT 4 cut(s) 1071, 1103, 1108, 1140
FaqI GGGAC 8 cut(s) 899, 957, 1346, 1446, 1529, 1589, 1881, 2110
FauI CCCGC 1 cut(s) 1076
Fnu4HI GCNGC 7 cut(s) 24, 1206, 1586, 1959, 2157, 2264, 2391
FokI GGATG 5 cut(s) 435, 476, 751, 1604, 2149
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 7 cut(s) 24, 1206, 1586, 1959, 2157, 2264, 2391
FspBI CTAG 5 cut(s) 353, 452, 582, 612, 1185
GluI GCNGC 7 cut(s) 24, 1206, 1586, 1959, 2157, 2264, 2391
GsaI CCCAGC 1 cut(s) 631
GsuI CTGGAG 2 cut(s) 807, 1312
HapII CCGG 7 cut(s) 170, 280, 393, 727, 1139, 1589, 1881
HgaI GACGC 1 cut(s) 1521
Hin1I GRCGYC 1 cut(s) 1513
HincII GTYRAC 2 cut(s) 723, 922
HindII GTYRAC 2 cut(s) 723, 922
HindIII AAGCTT 3 cut(s) 2051, 2230, 2551
HinfI GANTC 6 cut(s) 275, 1853, 1932, 2073, 2149, 2331
HpaI GTTAAC 1 cut(s) 723
HpaII CCGG 7 cut(s) 170, 280, 393, 727, 1139, 1589, 1881
HphI GGTGA 9 cut(s) 353, 513, 574, 1115, 1351, 1643, 2154, 2285, 2328
Hpy166II GTNNAC 6 cut(s) 723, 922, 1374, 1764, 2257, 2368
Hpy188I TCNGA 6 cut(s) 335, 1474, 1489, 1509, 1831, 1998
Hpy8I GTNNAC 6 cut(s) 723, 922, 1374, 1764, 2257, 2368
HpyCH4III ACNGT 9 cut(s) 70, 471, 1353, 1392, 1418, 1496, 1895, 2452, 2518
HpyCH4IV ACGT 1 cut(s) 853
HpyCH4V TGCA 5 cut(s) 23, 961, 1224, 1708, 2390
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 1521
HpyF3I CTNAG 9 cut(s) 254, 633, 994, 1134, 1508, 1611, 1798, 1977, 2549
HpySE526I ACGT 1 cut(s) 853
Hsp92I GRCGYC 1 cut(s) 1513
KpnI GGTACC 1 cut(s) 1252
KspAI GTTAAC 1 cut(s) 723
Kzo9I GATC 7 cut(s) 132, 1217, 1738, 1794, 1888, 2357, 2413
LmnI GCTCC 6 cut(s) 83, 192, 312, 1202, 1930, 2085
Lsp1109I GCAGC 5 cut(s) 35, 1945, 2168, 2250, 2402
LweI GCATC 4 cut(s) 174, 413, 727, 2127
MabI ACCWGGT 1 cut(s) 337
MaeI CTAG 5 cut(s) 353, 452, 582, 612, 1185
MaeII ACGT 1 cut(s) 853
MalI GATC 7 cut(s) 134, 1219, 1740, 1796, 1890, 2359, 2415
MbiI CCGCTC 1 cut(s) 1205
MboI GATC 7 cut(s) 132, 1217, 1738, 1794, 1888, 2357, 2413
MboII GAAGA 9 cut(s) 68, 356, 520, 1279, 1673, 1997, 2410, 2421, 2460
MflI RGATCY 1 cut(s) 2357
MhlI GDGCHC 2 cut(s) 88, 500
MlyI GAGTC 2 cut(s) 1847, 2067
MmeI TCCRAC 2 cut(s) 12, 1854
MslI CAYNNNNRTG 2 cut(s) 2195, 2349
MspA1I CMGCKG 1 cut(s) 476
MspCI CTTAAG 1 cut(s) 757
MspI CCGG 7 cut(s) 170, 280, 393, 727, 1139, 1589, 1881
MssI GTTTAAAC 1 cut(s) 1500
Mva1269I GAATGC 1 cut(s) 2005
MwoI GCNNNNNNNGC 2 cut(s) 233, 1521
NciI CCSGG 3 cut(s) 171, 280, 727
NdeII GATC 7 cut(s) 132, 1217, 1738, 1794, 1888, 2357, 2413
NspI RCATGY 2 cut(s) 236, 2038
NspV TTCGAA 1 cut(s) 1652
PaeR7I CTCGAG 1 cut(s) 2436
PagI TCATGA 2 cut(s) 1716, 2529
PceI AGGCCT 4 cut(s) 518, 1410, 1696, 2426
PctI GAATGC 1 cut(s) 2005
PfeI GAWTC 4 cut(s) 275, 1932, 2149, 2331
PflMI CCANNNNNTGG 1 cut(s) 1427
PfoI TCCNGGA 3 cut(s) 278, 457, 1262
PkrI GCNGC 7 cut(s) 25, 1207, 1587, 1960, 2158, 2265, 2392
PleI GAGTC 2 cut(s) 1847, 2067
PmeI GTTTAAAC 1 cut(s) 1500
PpsI GAGTC 2 cut(s) 1847, 2067
PpuMI RGGWCCY 1 cut(s) 1433
Psp124BI GAGCTC 1 cut(s) 88
Psp5II RGGWCCY 1 cut(s) 1433
PspEI GGTNACC 1 cut(s) 1631
PspFI CCCAGC 1 cut(s) 627
PspPPI RGGWCCY 1 cut(s) 1433
PsuI RGATCY 1 cut(s) 2357
RsaI GTAC 3 cut(s) 175, 1250, 1373
RsaNI GTAC 3 cut(s) 174, 1249, 1372
RseI CAYNNNNRTG 2 cut(s) 2195, 2349
Rsr2I CGGWCCG 1 cut(s) 471
RsrII CGGWCCG 1 cut(s) 471
SacI GAGCTC 1 cut(s) 88
SatI GCNGC 7 cut(s) 24, 1206, 1586, 1959, 2157, 2264, 2391
Sau3AI GATC 7 cut(s) 132, 1217, 1738, 1794, 1888, 2357, 2413
SchI GAGTC 2 cut(s) 1847, 2067
SduI GDGCHC 2 cut(s) 88, 500
SexAI ACCWGGT 1 cut(s) 337
SfaNI GCATC 4 cut(s) 174, 413, 727, 2127
SfcI CTRYAG 1 cut(s) 703
Sfr274I CTCGAG 1 cut(s) 2436
SfuI TTCGAA 1 cut(s) 1652
SinI GGWCC 7 cut(s) 213, 471, 1141, 1181, 1433, 1543, 2217
SlaI CTCGAG 1 cut(s) 2436
SmiMI CAYNNNNRTG 2 cut(s) 2195, 2349
SmlI CTYRAG 5 cut(s) 757, 967, 2075, 2222, 2436
SmoI CTYRAG 5 cut(s) 757, 967, 2075, 2222, 2436
SseBI AGGCCT 4 cut(s) 518, 1410, 1696, 2426
SsiI CCGC 6 cut(s) 447, 474, 1069, 1205, 1334, 1585
SspMI CTAG 5 cut(s) 353, 452, 582, 612, 1185
SstI GAGCTC 1 cut(s) 88
StuI AGGCCT 4 cut(s) 518, 1410, 1696, 2426
StyI CCWWGG 3 cut(s) 513, 1184, 1616
TaaI ACNGT 9 cut(s) 70, 471, 1353, 1392, 1418, 1496, 1895, 2452, 2518
TaiI ACGT 1 cut(s) 856
TaqI TCGA 7 cut(s) 413, 1043, 1228, 1652, 1724, 2329, 2437
TaqII GACCGA 2 cut(s) 1230, 1531
TatI WGTACW 1 cut(s) 1371
TauI GCSGC 2 cut(s) 1208, 1588
TfiI GAWTC 4 cut(s) 275, 1932, 2149, 2331
TscAI CASTG 4 cut(s) 262, 1898, 2455, 2523
TseI GCWGC 5 cut(s) 23, 1958, 2156, 2263, 2390
TspDTI ATGAA 4 cut(s) 194, 339, 1705, 1733
TspGWI ACGGA 3 cut(s) 398, 895, 2375
TspRI CASTG 4 cut(s) 262, 1898, 2455, 2523
Van91I CCANNNNNTGG 1 cut(s) 1427
Vha464I CTTAAG 1 cut(s) 757
VpaK11BI GGWCC 7 cut(s) 213, 471, 1141, 1181, 1433, 1543, 2217
XagI CCTNNNNNAGG 1 cut(s) 512
XapI RAATTY 8 cut(s) 218, 463, 1058, 1726, 1825, 1949, 2096, 2281
XceI RCATGY 2 cut(s) 236, 2038
XcmI CCANNNNNNNNNTGG 1 cut(s) 582
XhoI CTCGAG 1 cut(s) 2436
XmaJI CCTAGG 1 cut(s) 1184
XspI CTAG 5 cut(s) 353, 452, 582, 612, 1185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.