Rh2BG376100

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000147
Physical Location & Seq
Forward (+)
53127133 .. 53128680
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG376100.1

Sequence Viewer

Length: 864 bp
ATGCTTCCTCGTAGCGATGGTGAGCCCATCACTATACCTGAGTCGTCAAAGCTGACTGCTCCTCTACCTACTAATGTGCCCGATGAAACCTTGTTGGTTTTTCCTGTGATTCGAGGCCCGAATACTACGGCTGCCCAGATGTTTTTCCTTGCTAATCGACCTGATGATCAGCCCACTGTTCACCCAGCCAACCCTCACGGGGACTGGGCTTTCCACGCACTCACTCGGGGCTCCCCACCCGTAAATCATAGACGTCAACCTCCTTCTTATGCTGAGGTCCGGGATAATACCTCGTTTGTTGATGTGCTTCGCAATATGAATGAGGAGTTCGGTGTGAACATTAGTTCGATGCATGATTCTCTCCCACTGCATGCCCAAGGGCCGGAGATAGTTTTACCTAATCCAGAAACTTCGACCACTGATATGCCACTTGTGGTGGCTCCGGAGGATCCCGAGCTGCTGGCCATTGTTCCTCCTCCTCCTGATGGTGTTCACAATGCTTTGGTGGCTGCTCATCCAGTTGATGATGACCAGGATGCTTTTGCTGGTGATATGGCAGCTGAGGATGGCCAGGAGGATGATGCATATTTGGATGATGATGTTGATCTTAATGAGGATGTTGACATTGAGGAGAAAGAGTTGCAGAATGGGTTGTGGCTTGATTTATTAAATCTTCATGTTCCTTCTTTTGAGGCTTGGATTATTATTAGGGATTTTAATTGTATAATGAATAGTGCTAAAAAGCGGGGTGGGCTTCGTGTTATAAATCGTTATATGGTGCAATTTCAGGACTTTTTGAATAGTGCGGGATTGATTTCTTTGCCTTATACTGGTAGTGCGTTTACTTGGACTAATAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

287

Amino Acids

31.73

Weight (kDa)

4.34

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 764
AatII GACGTC 1 cut(s) 256
AccIII TCCGGA 1 cut(s) 442
AciI CCGC 2 cut(s) 745, 806
AclWI GGATC 2 cut(s) 443, 456
AcoI YGGCCR 2 cut(s) 462, 568
AcyI GRCGYC 1 cut(s) 253
AfiI CCNNNNNNNGG 4 cut(s) 199, 382, 485, 830
AgsI TTSAA 1 cut(s) 799
AjnI CCWGG 2 cut(s) 531, 570
AluBI AGCT 3 cut(s) 52, 457, 560
AluI AGCT 3 cut(s) 52, 457, 560
AlwI GGATC 2 cut(s) 443, 456
Ama87I CYCGRG 2 cut(s) 225, 452
Aor13HI TCCGGA 1 cut(s) 442
AoxI GGCC 4 cut(s) 115, 380, 462, 568
ApeKI GCWGC 4 cut(s) 131, 457, 509, 557
AspS9I GGNCC 3 cut(s) 116, 277, 380
AsuC2I CCSGG 1 cut(s) 281
AsuHPI GGTGA 3 cut(s) 32, 173, 560
AvaI CYCGRG 2 cut(s) 225, 452
AvaII GGWCC 1 cut(s) 277
BaeGI GKGCMC 1 cut(s) 81
BalI TGGCCA 2 cut(s) 464, 570
BamHI GGATCC 1 cut(s) 448
BanII GRGCYC 2 cut(s) 27, 233
BbvCI CCTCAGC 2 cut(s) 273, 561
BbvI GCAGC 4 cut(s) 118, 444, 496, 569
BccI CCATC 4 cut(s) 11, 35, 479, 560
BceAI ACGGC 1 cut(s) 144
BciT130I CCWGG 2 cut(s) 533, 572
BclI TGATCA 1 cut(s) 166
BcnI CCSGG 1 cut(s) 281
BisI GCNGC 4 cut(s) 132, 458, 510, 558
BlsI GCNGC 4 cut(s) 133, 459, 511, 559
Bme1390I CCNGG 3 cut(s) 281, 533, 572
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 2 cut(s) 225, 452
BmgT120I GGNCC 3 cut(s) 116, 277, 380
BmiI GGNNCC 3 cut(s) 232, 441, 450
BmrFI CCNGG 3 cut(s) 281, 533, 572
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 3 cut(s) 339, 526, 571
BmuI ACTGGG 1 cut(s) 214
Bpu10I CCTNAGC 2 cut(s) 273, 561
BpuMI CCSGG 1 cut(s) 281
BsaBI GATNNNNATC 1 cut(s) 603
BsaHI GRCGYC 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 376
BsaWI WCCGGW 1 cut(s) 442
BsaXI ACNNNNNCTCC 2 cut(s) 623, 653
Bsc4I CCNNNNNNNGG 4 cut(s) 199, 382, 485, 830
Bse1I ACTGG 3 cut(s) 209, 518, 835
Bse8I GATNNNNATC 1 cut(s) 603
BseAI TCCGGA 1 cut(s) 442
BseBI CCWGG 2 cut(s) 533, 572
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 6 cut(s) 514, 541, 571, 583, 598, 622
BseJI GATNNNNATC 1 cut(s) 603
BseLI CCNNNNNNNGG 4 cut(s) 199, 382, 485, 830
BseMII CTCAG 3 cut(s) 30, 264, 552
BseNI ACTGG 3 cut(s) 209, 518, 835
BseRI GAGGAG 5 cut(s) 51, 338, 465, 468, 644
BseSI GKGCMC 1 cut(s) 81
BseXI GCAGC 4 cut(s) 118, 444, 496, 569
BseYI CCCAGC 1 cut(s) 184
BshFI GGCC 4 cut(s) 117, 382, 464, 570
BsiHKCI CYCGRG 2 cut(s) 225, 452
BsiSI CCGG 3 cut(s) 280, 383, 443
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 4 cut(s) 199, 382, 485, 830
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 4 cut(s) 117, 382, 464, 570
BsoBI CYCGRG 2 cut(s) 225, 452
Bsp1286I GDGCHC 3 cut(s) 27, 81, 233
Bsp13I TCCGGA 1 cut(s) 442
Bsp143I GATC 3 cut(s) 166, 448, 604
BspACI CCGC 2 cut(s) 745, 806
BspANI GGCC 4 cut(s) 117, 382, 464, 570
BspCNI CTCAG 3 cut(s) 31, 265, 553
BspEI TCCGGA 1 cut(s) 442
BspLI GGNNCC 3 cut(s) 232, 441, 450
BspPI GGATC 2 cut(s) 443, 456
BsrI ACTGG 3 cut(s) 209, 518, 835
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 3 cut(s) 166, 448, 604
BssNI GRCGYC 1 cut(s) 253
BssT1I CCWWGG 1 cut(s) 376
Bst2UI CCWGG 2 cut(s) 533, 572
Bst4CI ACNGT 1 cut(s) 178
BstACI GRCGYC 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 372, 462
BstDEI CTNAG 3 cut(s) 39, 273, 561
BstF5I GGATG 6 cut(s) 514, 541, 571, 583, 598, 622
BstKTI GATC 3 cut(s) 169, 451, 607
BstMBI GATC 3 cut(s) 166, 448, 604
BstMWI GCNNNNNNNGC 3 cut(s) 215, 506, 751
BstNI CCWGG 2 cut(s) 533, 572
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 3 cut(s) 279, 531, 570
BstSLI GKGCMC 1 cut(s) 81
BstV1I GCAGC 4 cut(s) 118, 444, 496, 569
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BsuRI GGCC 4 cut(s) 117, 382, 464, 570
BtgZI GCGATG 1 cut(s) 30
BtsCI GGATG 6 cut(s) 514, 541, 571, 583, 598, 622
BtsI GCAGTG 1 cut(s) 365
BtsIMutI CAGTG 3 cut(s) 174, 365, 417
Cac8I GCNNGC 2 cut(s) 372, 462
Cfr13I GGNCC 3 cut(s) 116, 277, 380
CviAII CATG 3 cut(s) 353, 371, 677
DdeI CTNAG 3 cut(s) 39, 273, 561
DpnI GATC 3 cut(s) 168, 450, 606
DpnII GATC 3 cut(s) 166, 448, 604
EaeI YGGCCR 2 cut(s) 462, 568
Eco130I CCWWGG 1 cut(s) 376
Eco24I GRGCYC 2 cut(s) 27, 233
Eco47I GGWCC 1 cut(s) 277
Eco88I CYCGRG 2 cut(s) 225, 452
EcoRII CCWGG 2 cut(s) 531, 570
EcoT14I CCWWGG 1 cut(s) 376
EcoT22I ATGCAT 2 cut(s) 354, 586
EcoT38I GRGCYC 2 cut(s) 27, 233
ErhI CCWWGG 1 cut(s) 376
FaeI CATG 3 cut(s) 356, 374, 680
FaqI GGGAC 1 cut(s) 215
FatI CATG 3 cut(s) 352, 370, 676
FauI CCCGC 2 cut(s) 738, 799
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 4 cut(s) 132, 458, 510, 558
FokI GGATG 6 cut(s) 501, 548, 578, 590, 605, 629
FriOI GRGCYC 2 cut(s) 27, 233
Fsp4HI GCNGC 4 cut(s) 132, 458, 510, 558
GluI GCNGC 4 cut(s) 132, 458, 510, 558
GsaI CCCAGC 1 cut(s) 188
HaeIII GGCC 4 cut(s) 117, 382, 464, 570
HapII CCGG 3 cut(s) 280, 383, 443
Hin1I GRCGYC 1 cut(s) 253
Hin1II CATG 3 cut(s) 356, 374, 680
HincII GTYRAC 2 cut(s) 257, 622
HindII GTYRAC 2 cut(s) 257, 622
HinfI GANTC 3 cut(s) 41, 109, 356
HpaII CCGG 3 cut(s) 280, 383, 443
HphI GGTGA 3 cut(s) 32, 173, 560
Hpy166II GTNNAC 6 cut(s) 181, 257, 337, 493, 622, 843
Hpy188III TCNNGA 5 cut(s) 404, 443, 452, 482, 788
Hpy8I GTNNAC 6 cut(s) 181, 257, 337, 493, 622, 843
HpyAV CCTTC 2 cut(s) 273, 693
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 5 cut(s) 352, 370, 584, 643, 781
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 506, 751
HpyF3I CTNAG 3 cut(s) 39, 273, 561
HpySE526I ACGT 1 cut(s) 253
Hsp92I GRCGYC 1 cut(s) 253
Hsp92II CATG 3 cut(s) 356, 374, 680
Kpn2I TCCGGA 1 cut(s) 442
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 3 cut(s) 166, 448, 604
LmnI GCTCC 3 cut(s) 64, 236, 445
Lsp1109I GCAGC 4 cut(s) 118, 444, 496, 569
LweI GCATC 3 cut(s) 339, 526, 571
MaeII ACGT 1 cut(s) 253
MalI GATC 3 cut(s) 168, 450, 606
MboI GATC 3 cut(s) 166, 448, 604
MboII GAAGA 1 cut(s) 665
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 3 cut(s) 27, 81, 233
MlsI TGGCCA 2 cut(s) 464, 570
MluCI AATT 2 cut(s) 718, 782
MluNI TGGCCA 2 cut(s) 464, 570
MlyI GAGTC 1 cut(s) 50
Mox20I TGGCCA 2 cut(s) 464, 570
Mph1103I ATGCAT 2 cut(s) 354, 586
MroI TCCGGA 1 cut(s) 442
MscI TGGCCA 2 cut(s) 464, 570
MseI TTAA 3 cut(s) 609, 668, 717
MslI CAYNNNNRTG 1 cut(s) 422
Msp20I TGGCCA 2 cut(s) 464, 570
MspA1I CMGCKG 1 cut(s) 560
MspI CCGG 3 cut(s) 280, 383, 443
MspR9I CCNGG 3 cut(s) 281, 533, 572
MvaI CCWGG 2 cut(s) 533, 572
MwoI GCNNNNNNNGC 3 cut(s) 215, 506, 751
NciI CCSGG 1 cut(s) 281
NdeII GATC 3 cut(s) 166, 448, 604
NlaIII CATG 3 cut(s) 356, 374, 680
NlaIV GGNNCC 3 cut(s) 232, 441, 450
NsiI ATGCAT 2 cut(s) 354, 586
NspI RCATGY 1 cut(s) 374
PaeI GCATGC 1 cut(s) 374
PfeI GAWTC 2 cut(s) 109, 356
PfoI TCCNGGA 1 cut(s) 279
PkrI GCNGC 4 cut(s) 133, 459, 511, 559
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PsiI TTATAA 1 cut(s) 764
Psp6I CCWGG 2 cut(s) 531, 570
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 2 cut(s) 531, 570
PspN4I GGNNCC 3 cut(s) 232, 441, 450
PspPI GGNCC 3 cut(s) 116, 277, 380
PsuI RGATCY 1 cut(s) 448
PvuII CAGCTG 1 cut(s) 560
RseI CAYNNNNRTG 1 cut(s) 422
SaqAI TTAA 3 cut(s) 609, 668, 717
SatI GCNGC 4 cut(s) 132, 458, 510, 558
Sau3AI GATC 3 cut(s) 166, 448, 604
Sau96I GGNCC 3 cut(s) 116, 277, 380
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 3 cut(s) 281, 533, 572
SduI GDGCHC 3 cut(s) 27, 81, 233
SfaNI GCATC 3 cut(s) 339, 526, 571
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 422
SphI GCATGC 1 cut(s) 374
Sse9I AATT 2 cut(s) 718, 782
SsiI CCGC 2 cut(s) 745, 806
StyD4I CCNGG 3 cut(s) 279, 531, 570
StyI CCWWGG 1 cut(s) 376
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 1 cut(s) 256
TaqI TCGA 4 cut(s) 112, 157, 347, 413
TasI AATT 2 cut(s) 718, 782
TfiI GAWTC 2 cut(s) 109, 356
Tru1I TTAA 3 cut(s) 609, 668, 717
Tru9I TTAA 3 cut(s) 609, 668, 717
TscAI CASTG 3 cut(s) 181, 372, 424
TseI GCWGC 4 cut(s) 131, 457, 509, 557
TspDTI ATGAA 4 cut(s) 99, 332, 665, 743
TspRI CASTG 3 cut(s) 181, 372, 424
VpaK11BI GGWCC 1 cut(s) 277
XceI RCATGY 1 cut(s) 374
ZraI GACGTC 1 cut(s) 254
Zsp2I ATGCAT 2 cut(s) 354, 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.