FvH4_7g06171

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000147
Physical Location & Seq
Reverse (-)
6318565 .. 6322356
3792 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06171.t1

Sequence Viewer

Length: 2154 bp
ATGACAAAACAAGCTCTTAAGGAGCTGATAGGAAAGTACCGCCCATCCATTATCTTTCTTTCAGAAACTCGAATGAAAGATAAGGATATCATAAGTATAAGGAGGACCTGCAAGTATTCACATGGTATTACAGTGAAACCTATCAAAACTGCTGGGGGGCTGGCATTATGGTGGGATAACACTGTTACAGTTCAAATCCTCTCTAAATCCAAATTCTTGATAGATACAGTGGTCAAGTTTAAAGCTGATGATACTTTGGTTCGTTTCTCTTGGTTCTATGGTCCACCCGACAAGAGTGATAGACCTGGGTTTTGGAATAGGTGTGCTAACCTAGCTGGTTCTATTGATCTCCCGTGGCTTTGTGCTGGTGATTTTAACGAATTTTTATGGCCTCATGAAAAGGAGGGTGGAAATCCTTGGAACCCAGGTAGAAGGCGTTTTCTTCGCGATTTTATGGAAGCTAATGATCTCATAGAGCTGCAATCAAGGGGTCAGAAGCTTACATGGTGCAATAATTGGCCTGAAGGAGGTCTTATTAAGATCAAACTGGATAGAGGGGTGGTAAACACAAAGTGGTTGGAGCGGTGGCCTGATTCAAATGTGTTCAATCATCCTCGGTTGGGGTCTGATCATTGTGCTCTAACTTTTGATTCAGATCCACCAAGGGTGTGTGGGCCCAAACATTTTAAGTTTGATCCAATGTGGGCTGAAGATCCTGAGTGTAGAGATATTGTGGAGGTTTCTTGGACTGACAACTTGCCAATTACTGGTGCTGCCCAATGGGTCTCAAGAAGTCACAGATGTAGTGTTGACTTATCCAGGTGGAGTAAAAAGAAATTCTCAAACAATCGCATGGCTATTAATAGAAGAATAGAGGAGCTTCAAGCCATTCAGGAATCTACAACTAGTGAAGCACGGAATAATGAAGCCTTATTAATTGGGGAGATTGAGGCTCTTTGGGTCAAGGAGGAGAAGTATTGGAGGCAACGGTCCAGAGTCAGTTGGCTAAAAGCAGGGGACTCAAATACCAAATTCTTTCACTTGACAACCATCCAACGAAGACAGCGGAACAAAGTCCTCAAGCTTAAATCCACCAATGACGTTTGGCTGGACCGTGAGTGCACTATTCGGTCTGAAGTTGAGAATTATTTCAGAGATATTTTTAAGAGCTCTGGGGAGAGAGATTGGGATGAGGCTCTGACTGCTGTACCCCACATGGTGAGAGACCTAATCGATTGGGACACTAGGAGTTGGAAGCTGGATATGATCAATGACCTAATCTCGGGGGATGATCAATTGGACATTGAGTTGATAAGCTTGGGAGATCAGTCTATGATTGATAAGATTATTTGGCCTAAGACAAAGAGTGGTCACTACTCTGTCAAGTCAGGCTATCATTTTATACATTCTCAAAATTGCAAGCCTACTACACAGCAGTCTCACTCATCCCACAGTATAAATCAGAAAGTGTGGAAGACGGTTTGGTCTACCCAAACTACTCCCAAGATTCGCAATTTCCTATGGAGAATCCTGGCTAATGTTTTGCCATCTTATCTAAATCTTCACAGAAGGAAAATAATATCTTCCCCCTTGTGCCCGGTGTGTGCTCTGTTTCCTGAGTCTATCGAACACATGTTTTTACAGTGTTCGGGTGCGGTGTGTGCTTGGTTTGCCTCTGACTTGCATTACAAGATCAACCTTCAAGCTATAACTACTTTTGATTTGTGGTTCGAAAATATTATTCTCATGATAATTGACTGCAAATCAATTAGAGAGGAGTTTCTCACCAAGGTTGTTTTTCTGCTTTGGGAAATTTGGAAAGCTAGGAATGCTTTTGTCTTTGAGGCTACTCCAATTGATCCAAGAATTGTGGCCAAGAAAGCTGGTACTGCTGCTGCAGAATTCATCACCTGCAAAAACCACAATCTCATGTCAAGATTAATTTCTCTGTCTCATATGCACTCCAGCCAGACGCAGTCGGGGAGTAATTTGACCCAAAGTTGGAGGCCCCCTCCTCCTGGTCATATTAAAATTAACTGTGATGCAGCATGGATTGAAAGTTCGAAGCTTACCGGCATTTGTGCTATAGCTCGTGATTCTCATGGCTCCCCTTTGATGGAGCTACCTTGCTGTGCCGAACGGGATCTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

718

Amino Acids

82.93

Weight (kDa)

8.87

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 4 - 211 4e-07 Endonuclease/Exonuclease/phosphatase family
zf-RVT PF13966 459 - 556 1.7e-15 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1919
AasI GACNNNNNNGTC 1 cut(s) 1483
Acc36I ACCTGC 2 cut(s) 116, 1919
AccB7I CCANNNNNTGG 1 cut(s) 767
AccBSI CCGCTC 1 cut(s) 583
AccI GTMKAC 1 cut(s) 1487
AccII CGCG 1 cut(s) 447
AciI CCGC 4 cut(s) 40, 583, 1066, 1655
AclWI GGATC 5 cut(s) 650, 689, 707, 1853, 2151
AcoI YGGCCR 1 cut(s) 1872
AcsI RAATTY 6 cut(s) 212, 380, 836, 1031, 1812, 1901
AcuI CTGAAG 3 cut(s) 543, 729, 1155
AdeI CACNNNGTG 2 cut(s) 573, 1219
AfaI GTAC 3 cut(s) 38, 1209, 1888
AfiI CCNNNNNNNGG 7 cut(s) 527, 620, 767, 1282, 2001, 2018, 2116
AflII CTTAAG 1 cut(s) 17
AflIII ACRYGT 1 cut(s) 1632
AgsI TTSAA 6 cut(s) 194, 597, 607, 884, 1703, 2057
AhlI ACTAGT 1 cut(s) 905
AjnI CCWGG 5 cut(s) 304, 424, 818, 1530, 2017
AloI GAACNNNNNNTCC 2 cut(s) 2044, 2076
Alw21I GWGCWC 4 cut(s) 640, 1124, 1172, 1609
Alw26I GTCTC 4 cut(s) 790, 1218, 1443, 1956
Alw44I GTGCAC 1 cut(s) 1120
AlwI GGATC 5 cut(s) 650, 689, 707, 1853, 2151
Ama87I CYCGRG 1 cut(s) 1282
AoxI GGCC 7 cut(s) 389, 518, 587, 674, 1352, 1872, 2006
ApaI GGGCCC 1 cut(s) 678
ApaLI GTGCAC 1 cut(s) 1120
ApeKI GCWGC 5 cut(s) 478, 773, 1892, 1895, 2045
ApoI RAATTY 6 cut(s) 212, 380, 836, 1031, 1812, 1901
ArsI GACNNNNNNTTYG 2 cut(s) 294, 326
AseI ATTAAT 3 cut(s) 861, 935, 1940
Asp700I GAANNNNTTC 1 cut(s) 1148
AspS9I GGNCC 7 cut(s) 105, 281, 674, 675, 990, 1111, 2007
AsuC2I CCSGG 1 cut(s) 1598
AsuHPI GGTGA 4 cut(s) 380, 1231, 1777, 1900
AsuII TTCGAA 2 cut(s) 1731, 2063
AvaI CYCGRG 1 cut(s) 1282
AvaII GGWCC 4 cut(s) 105, 281, 990, 1111
BaeGI GKGCMC 3 cut(s) 678, 1124, 1598
BaeI ACNNNNGTAYC 6 cut(s) 216, 243, 249, 276, 1191, 1224
BalI TGGCCA 1 cut(s) 1874
BanII GRGCYC 2 cut(s) 678, 1172
BauI CACGAG 1 cut(s) 2091
BbsI GAAGAC 2 cut(s) 1066, 1481
Bbv12I GWGCWC 4 cut(s) 640, 1124, 1172, 1609
BbvI GCAGC 5 cut(s) 465, 760, 1879, 1882, 2057
BccI CCATC 4 cut(s) 52, 1058, 1555, 2110
BciT130I CCWGG 5 cut(s) 306, 426, 820, 1532, 2019
BclI TGATCA 3 cut(s) 628, 1266, 1291
BcnI CCSGG 1 cut(s) 1598
BcoDI GTCTC 4 cut(s) 790, 1218, 1443, 1956
BcuI ACTAGT 1 cut(s) 905
BfaI CTAG 4 cut(s) 332, 906, 1245, 1824
BfmI CTRYAG 2 cut(s) 1896, 2085
BfrI CTTAAG 1 cut(s) 17
BfuAI ACCTGC 2 cut(s) 116, 1919
BisI GCNGC 5 cut(s) 479, 774, 1893, 1896, 2046
BlsI GCNGC 5 cut(s) 480, 775, 1894, 1897, 2047
Bme1390I CCNGG 6 cut(s) 306, 426, 820, 1532, 1598, 2019
Bme18I GGWCC 4 cut(s) 105, 281, 990, 1111
BmeT110I CYCGRG 1 cut(s) 1282
BmgT120I GGNCC 7 cut(s) 105, 281, 674, 675, 990, 1111, 2007
BmiI GGNNCC 4 cut(s) 422, 676, 2009, 2107
BmrFI CCNGG 6 cut(s) 306, 426, 820, 1532, 1598, 2019
BmsI GCATC 1 cut(s) 2032
BpiI GAAGAC 2 cut(s) 1066, 1481
BplI GAGNNNNNCTC 2 cut(s) 1996, 2028
BpmI CTGGAG 1 cut(s) 1948
Bpu14I TTCGAA 2 cut(s) 1731, 2063
BpuEI CTTGAG 2 cut(s) 772, 1064
BpuMI CCSGG 1 cut(s) 1598
Bsa29I ATCGAT 1 cut(s) 1233
BsaBI GATNNNNATC 1 cut(s) 654
BsaI GGTCTC 2 cut(s) 790, 1218
BsaJI CCNNGG 7 cut(s) 305, 353, 416, 424, 614, 662, 1788
BsaXI ACNNNNNCTCC 2 cut(s) 959, 989
Bsc4I CCNNNNNNNGG 7 cut(s) 527, 620, 767, 1282, 2001, 2018, 2116
Bse118I RCCGGY 1 cut(s) 2072
Bse1I ACTGG 2 cut(s) 552, 772
Bse8I GATNNNNATC 1 cut(s) 654
BseBI CCWGG 5 cut(s) 306, 426, 820, 1532, 2019
BseCI ATCGAT 1 cut(s) 1233
BseDI CCNNGG 7 cut(s) 305, 353, 416, 424, 614, 662, 1788
BseGI GGATG 6 cut(s) 44, 610, 1050, 1195, 1294, 1445
BseJI GATNNNNATC 1 cut(s) 654
BseLI CCNNNNNNNGG 7 cut(s) 527, 620, 767, 1282, 2001, 2018, 2116
BseMII CTCAG 2 cut(s) 708, 1608
BseNI ACTGG 2 cut(s) 552, 772
BseRI GAGGAG 4 cut(s) 890, 983, 1790, 2004
BseSI GKGCMC 3 cut(s) 678, 1124, 1598
BseXI GCAGC 5 cut(s) 465, 760, 1879, 1882, 2057
BseYI CCCAGC 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 447
BshFI GGCC 7 cut(s) 391, 520, 589, 676, 1354, 1874, 2008
BshVI ATCGAT 1 cut(s) 1233
BsiHKAI GWGCWC 4 cut(s) 640, 1124, 1172, 1609
BsiHKCI CYCGRG 1 cut(s) 1282
BsiSI CCGG 2 cut(s) 1598, 2073
BslFI GGGAC 2 cut(s) 1031, 1253
BslI CCNNNNNNNGG 7 cut(s) 527, 620, 767, 1282, 2001, 2018, 2116
BsmAI GTCTC 4 cut(s) 790, 1218, 1443, 1956
BsmFI GGGAC 2 cut(s) 1031, 1253
BsmI GAATGC 1 cut(s) 1834
BsnI GGCC 7 cut(s) 391, 520, 589, 676, 1354, 1874, 2008
Bso31I GGTCTC 2 cut(s) 790, 1218
BsoBI CYCGRG 1 cut(s) 1282
Bsp119I TTCGAA 2 cut(s) 1731, 2063
Bsp120I GGGCCC 1 cut(s) 674
Bsp1286I GDGCHC 6 cut(s) 640, 678, 1124, 1172, 1598, 1609
Bsp68I TCGCGA 1 cut(s) 447
BspACI CCGC 4 cut(s) 40, 583, 1066, 1655
BspANI GGCC 7 cut(s) 391, 520, 589, 676, 1354, 1874, 2008
BspCNI CTCAG 2 cut(s) 709, 1609
BspDI ATCGAT 1 cut(s) 1233
BspFNI CGCG 1 cut(s) 447
BspHI TCATGA 2 cut(s) 394, 1746
BspLI GGNNCC 4 cut(s) 422, 676, 2009, 2107
BspMAI CTGCAG 1 cut(s) 1900
BspMI ACCTGC 2 cut(s) 116, 1919
BspPI GGATC 5 cut(s) 650, 689, 707, 1853, 2151
BspT104I TTCGAA 2 cut(s) 1731, 2063
BspTI CTTAAG 1 cut(s) 17
BspTNI GGTCTC 2 cut(s) 790, 1218
BsrBI CCGCTC 1 cut(s) 583
BsrFI RCCGGY 1 cut(s) 2072
BsrI ACTGG 2 cut(s) 552, 772
BssAI RCCGGY 1 cut(s) 2072
BssECI CCNNGG 7 cut(s) 305, 353, 416, 424, 614, 662, 1788
BssSI CACGAG 1 cut(s) 2091
BssT1I CCWWGG 3 cut(s) 416, 662, 1788
Bst2BI CACGAG 1 cut(s) 2091
Bst2UI CCWGG 5 cut(s) 306, 426, 820, 1532, 2019
BstAFI CTTAAG 1 cut(s) 17
BstBI TTCGAA 2 cut(s) 1731, 2063
BstC8I GCNNGC 2 cut(s) 162, 1421
BstDEI CTNAG 3 cut(s) 717, 1356, 1617
BstDSI CCRYGG 1 cut(s) 353
BstENI CCTNNNNNAGG 1 cut(s) 525
BstF5I GGATG 6 cut(s) 44, 610, 1050, 1195, 1294, 1445
BstFNI CGCG 1 cut(s) 447
BstMAI GTCTC 4 cut(s) 790, 1218, 1443, 1956
BstMWI GCNNNNNNNGC 7 cut(s) 332, 1202, 1661, 1670, 1829, 1880, 1889
BstNI CCWGG 5 cut(s) 306, 426, 820, 1532, 2019
BstNSI RCATGY 1 cut(s) 1636
BstSCI CCNGG 6 cut(s) 304, 424, 818, 1530, 1596, 2017
BstSFI CTRYAG 2 cut(s) 1896, 2085
BstSLI GKGCMC 3 cut(s) 678, 1124, 1598
BstUI CGCG 1 cut(s) 447
BstV1I GCAGC 5 cut(s) 465, 760, 1879, 1882, 2057
BstV2I GAAGAC 2 cut(s) 1066, 1481
BstX2I RGATCY 3 cut(s) 655, 712, 2143
BstYI RGATCY 3 cut(s) 655, 712, 2143
Bsu15I ATCGAT 1 cut(s) 1233
BsuRI GGCC 7 cut(s) 391, 520, 589, 676, 1354, 1874, 2008
BsuTUI ATCGAT 1 cut(s) 1233
BtgI CCRYGG 1 cut(s) 353
BtsCI GGATG 6 cut(s) 44, 610, 1050, 1195, 1294, 1445
BtsIMutI CAGTG 4 cut(s) 138, 180, 234, 1649
BtuMI TCGCGA 1 cut(s) 447
BveI ACCTGC 2 cut(s) 116, 1919
Cac8I GCNNGC 2 cut(s) 162, 1421
CciI TCATGA 2 cut(s) 394, 1746
Cfr10I RCCGGY 1 cut(s) 2072
Cfr13I GGNCC 7 cut(s) 105, 281, 674, 675, 990, 1111, 2007
ClaI ATCGAT 1 cut(s) 1233
CseI GACGC 1 cut(s) 1981
Csp6I GTAC 3 cut(s) 37, 1208, 1887
CspCI CAANNNNNGTGG 2 cut(s) 1851, 1886
CviQI GTAC 3 cut(s) 37, 1208, 1887
DdeI CTNAG 3 cut(s) 717, 1356, 1617
DraI TTTAAA 1 cut(s) 241
DraIII CACNNNGTG 2 cut(s) 573, 1219
DrdI GACNNNNNNGTC 1 cut(s) 1483
DseDI GACNNNNNNGTC 1 cut(s) 1483
EaeI YGGCCR 1 cut(s) 1872
Ecl136II GAGCTC 1 cut(s) 1170
Eco130I CCWWGG 3 cut(s) 416, 662, 1788
Eco24I GRGCYC 2 cut(s) 678, 1172
Eco31I GGTCTC 2 cut(s) 790, 1218
Eco32I GATATC 1 cut(s) 88
Eco47I GGWCC 4 cut(s) 105, 281, 990, 1111
Eco53kI GAGCTC 1 cut(s) 1170
Eco57I CTGAAG 3 cut(s) 543, 729, 1155
Eco88I CYCGRG 1 cut(s) 1282
EcoICRI GAGCTC 1 cut(s) 1170
EcoNI CCTNNNNNAGG 1 cut(s) 525
EcoO109I RGGNCCY 2 cut(s) 105, 2007
EcoRI GAATTC 1 cut(s) 1901
EcoRII CCWGG 5 cut(s) 304, 424, 818, 1530, 2017
EcoRV GATATC 1 cut(s) 88
EcoT14I CCWWGG 3 cut(s) 416, 662, 1788
EcoT38I GRGCYC 2 cut(s) 678, 1172
ErhI CCWWGG 3 cut(s) 416, 662, 1788
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 2 cut(s) 1031, 1253
FauNDI CATATG 1 cut(s) 1956
FbaI TGATCA 3 cut(s) 628, 1266, 1291
FblI GTMKAC 1 cut(s) 1487
Fnu4HI GCNGC 5 cut(s) 479, 774, 1893, 1896, 2046
FokI GGATG 6 cut(s) 31, 597, 1037, 1202, 1301, 1432
FriOI GRGCYC 2 cut(s) 678, 1172
Fsp4HI GCNGC 5 cut(s) 479, 774, 1893, 1896, 2046
FspBI CTAG 4 cut(s) 332, 906, 1245, 1824
GluI GCNGC 5 cut(s) 479, 774, 1893, 1896, 2046
GsaI CCCAGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 1948
HaeIII GGCC 7 cut(s) 391, 520, 589, 676, 1354, 1874, 2008
HapII CCGG 2 cut(s) 1598, 2073
HgaI GACGC 1 cut(s) 1981
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HindIII AAGCTT 4 cut(s) 497, 1082, 1315, 2066
HinfI GANTC 9 cut(s) 593, 650, 896, 996, 1019, 1507, 1527, 1619, 2096
HpaII CCGG 2 cut(s) 1598, 2073
HphI GGTGA 4 cut(s) 380, 1231, 1777, 1900
Hpy166II GTNNAC 5 cut(s) 284, 565, 811, 1122, 1488
Hpy188I TCNGA 9 cut(s) 64, 495, 628, 655, 1135, 1154, 1200, 1464, 1678
Hpy8I GTNNAC 5 cut(s) 284, 565, 811, 1122, 1488
HpyAV CCTTC 4 cut(s) 426, 518, 1563, 1709
HpyCH4IV ACGT 1 cut(s) 1101
HpyF10VI GCNNNNNNNGC 7 cut(s) 332, 1202, 1661, 1670, 1829, 1880, 1889
HpyF3I CTNAG 3 cut(s) 717, 1356, 1617
HpySE526I ACGT 1 cut(s) 1101
Ksp22I TGATCA 3 cut(s) 628, 1266, 1291
LmnI GCTCC 5 cut(s) 22, 580, 877, 2111, 2119
Lsp1109I GCAGC 5 cut(s) 465, 760, 1879, 1882, 2057
LweI GCATC 1 cut(s) 2032
MaeI CTAG 4 cut(s) 332, 906, 1245, 1824
MaeII ACGT 1 cut(s) 1101
MaeIII GTNAC 3 cut(s) 184, 794, 1370
MbiI CCGCTC 1 cut(s) 583
MboII GAAGA 7 cut(s) 434, 722, 879, 1071, 1486, 1553, 1575
MfeI CAATTG 2 cut(s) 1295, 1854
MflI RGATCY 3 cut(s) 655, 712, 2143
MhlI GDGCHC 6 cut(s) 640, 678, 1124, 1172, 1598, 1609
MlsI TGGCCA 1 cut(s) 1874
MluNI TGGCCA 1 cut(s) 1874
MlyI GAGTC 3 cut(s) 1005, 1013, 1628
MmeI TCCRAC 4 cut(s) 558, 1078, 1232, 1982
Mox20I TGGCCA 1 cut(s) 1874
MroXI GAANNNNTTC 1 cut(s) 1148
MscI TGGCCA 1 cut(s) 1874
MslI CAYNNNNRTG 1 cut(s) 169
Msp20I TGGCCA 1 cut(s) 1874
MspA1I CMGCKG 1 cut(s) 1066
MspCI CTTAAG 1 cut(s) 17
MspI CCGG 2 cut(s) 1598, 2073
MspR9I CCNGG 6 cut(s) 306, 426, 820, 1532, 1598, 2019
MunI CAATTG 2 cut(s) 1295, 1854
Mva1269I GAATGC 1 cut(s) 1834
MvaI CCWGG 5 cut(s) 306, 426, 820, 1532, 2019
MvnI CGCG 1 cut(s) 447
MwoI GCNNNNNNNGC 7 cut(s) 332, 1202, 1661, 1670, 1829, 1880, 1889
NciI CCSGG 1 cut(s) 1598
NdeI CATATG 1 cut(s) 1956
NlaIV GGNNCC 4 cut(s) 422, 676, 2009, 2107
NmuCI GTSAC 2 cut(s) 794, 1370
NruI TCGCGA 1 cut(s) 447
NspI RCATGY 1 cut(s) 1636
NspV TTCGAA 2 cut(s) 1731, 2063
PagI TCATGA 2 cut(s) 394, 1746
PaqCI CACCTGC 1 cut(s) 1919
PciI ACATGT 1 cut(s) 1632
PctI GAATGC 1 cut(s) 1834
PdmI GAANNNNTTC 1 cut(s) 1148
PfeI GAWTC 6 cut(s) 593, 650, 896, 1507, 1527, 2096
PflFI GACNNNGTC 1 cut(s) 1975
PflMI CCANNNNNTGG 1 cut(s) 767
PkrI GCNGC 5 cut(s) 480, 775, 1894, 1897, 2047
PleI GAGTC 3 cut(s) 1004, 1013, 1627
PpsI GAGTC 3 cut(s) 1004, 1013, 1627
PpuMI RGGWCCY 1 cut(s) 105
PscI ACATGT 1 cut(s) 1632
PshBI ATTAAT 3 cut(s) 861, 935, 1940
Psp124BI GAGCTC 1 cut(s) 1172
Psp5II RGGWCCY 1 cut(s) 105
Psp6I CCWGG 5 cut(s) 304, 424, 818, 1530, 2017
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 5 cut(s) 304, 424, 818, 1530, 2017
PspN4I GGNNCC 4 cut(s) 422, 676, 2009, 2107
PspOMI GGGCCC 1 cut(s) 674
PspPI GGNCC 7 cut(s) 105, 281, 674, 675, 990, 1111, 2007
PspPPI RGGWCCY 1 cut(s) 105
PstI CTGCAG 1 cut(s) 1900
PsuI RGATCY 3 cut(s) 655, 712, 2143
PsyI GACNNNGTC 1 cut(s) 1975
RruI TCGCGA 1 cut(s) 447
RsaI GTAC 3 cut(s) 38, 1209, 1888
RsaNI GTAC 3 cut(s) 37, 1208, 1887
RseI CAYNNNNRTG 1 cut(s) 169
SacI GAGCTC 1 cut(s) 1172
SatI GCNGC 5 cut(s) 479, 774, 1893, 1896, 2046
Sau96I GGNCC 7 cut(s) 105, 281, 674, 675, 990, 1111, 2007
SchI GAGTC 3 cut(s) 1005, 1013, 1628
ScrFI CCNGG 6 cut(s) 306, 426, 820, 1532, 1598, 2019
SduI GDGCHC 6 cut(s) 640, 678, 1124, 1172, 1598, 1609
SfaNI GCATC 1 cut(s) 2032
SfcI CTRYAG 2 cut(s) 1896, 2085
SfuI TTCGAA 2 cut(s) 1731, 2063
SinI GGWCC 4 cut(s) 105, 281, 990, 1111
SmiMI CAYNNNNRTG 1 cut(s) 169
SmlI CTYRAG 3 cut(s) 17, 787, 1079
SmoI CTYRAG 3 cut(s) 17, 787, 1079
SpeI ACTAGT 1 cut(s) 905
SsiI CCGC 4 cut(s) 40, 583, 1066, 1655
SspI AATATT 1 cut(s) 1738
SspMI CTAG 4 cut(s) 332, 906, 1245, 1824
SstI GAGCTC 1 cut(s) 1172
StyD4I CCNGG 6 cut(s) 304, 424, 818, 1530, 1596, 2017
StyI CCWWGG 3 cut(s) 416, 662, 1788
TaiI ACGT 1 cut(s) 1104
TaqI TCGA 5 cut(s) 70, 1233, 1626, 1731, 2063
TaqII GACCGA 1 cut(s) 1119
TfiI GAWTC 6 cut(s) 593, 650, 896, 1507, 1527, 2096
TscAI CASTG 4 cut(s) 138, 187, 234, 1649
TseFI GTSAC 2 cut(s) 794, 1370
TseI GCWGC 5 cut(s) 478, 773, 1892, 1895, 2045
Tsp45I GTSAC 2 cut(s) 794, 1370
TspDTI ATGAA 4 cut(s) 89, 411, 939, 1894
TspGWI ACGGA 1 cut(s) 931
TspRI CASTG 4 cut(s) 138, 187, 234, 1649
Tth111I GACNNNGTC 1 cut(s) 1975
Van91I CCANNNNNTGG 1 cut(s) 767
Vha464I CTTAAG 1 cut(s) 17
VneI GTGCAC 1 cut(s) 1120
VpaK11BI GGWCC 4 cut(s) 105, 281, 990, 1111
VspI ATTAAT 3 cut(s) 861, 935, 1940
XagI CCTNNNNNAGG 1 cut(s) 525
XapI RAATTY 6 cut(s) 212, 380, 836, 1031, 1812, 1901
XceI RCATGY 1 cut(s) 1636
XmiI GTMKAC 1 cut(s) 1487
XmnI GAANNNNTTC 1 cut(s) 1148
XspI CTAG 4 cut(s) 332, 906, 1245, 1824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.