Rmu_co8349913.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8349913.1
OG0000147
Physical Location & Seq
Reverse (-)
165 .. 794
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8349913.1_g000001.1.cds

Sequence Viewer

Length: 630 bp
atgaatactaattccctgttggatattgggtttaaagggcaaaggttcacttgggcccgaaaggtaggtgacttaattgttctacaagaaaggctggataggtgcttagccaatcaacactggttattggattggccaaatacttgtctcactcacctcacaagaataggatctgatcataaccctattcttatgagtacaaacccacctttgaagagacacaaggttgcttttaagtttgagtctttttgggctgatgattcggaggctgggctcttgattgaggaggactggacttcggtttctaccctcccaaatgtaaaaaattggactgctaatctcaatcgttgtcgttctagcttaaggaattggagcaagaaaagattccctaagtgtaacaagttggagattaaacaatgtctagaagagttagaaacgctgcaactacaatgtcctttttctagcactgagaaacaatatgagctatccaccaagttgggttctctttggttacgggaagagaagtactggcatcagaggtctagaatcaaatggttaaatctggcgattcaaataccagattttttcatctatctactatccacaggagacaaaggaaccagattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

209

Amino Acids

24.67

Weight (kDa)

9.17

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 178
AcoI YGGCCR 1 cut(s) 134
AfaI GTAC 2 cut(s) 199, 527
AflII CTTAAG 1 cut(s) 361
AgsI TTSAA 2 cut(s) 214, 572
AluBI AGCT 2 cut(s) 360, 484
AluI AGCT 2 cut(s) 360, 484
Alw26I GTCTC 3 cut(s) 152, 211, 603
AlwI GGATC 1 cut(s) 178
AoxI GGCC 2 cut(s) 54, 134
ApaI GGGCCC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 439
Asp700I GAANNNNTTC 1 cut(s) 383
AspS9I GGNCC 2 cut(s) 54, 55
AsuHPI GGTGA 2 cut(s) 80, 146
BaeGI GKGCMC 1 cut(s) 58
BalI TGGCCA 1 cut(s) 136
BanII GRGCYC 2 cut(s) 58, 276
BbvI GCAGC 1 cut(s) 426
BclI TGATCA 1 cut(s) 175
BcoDI GTCTC 3 cut(s) 152, 211, 603
BfaI CTAG 4 cut(s) 357, 422, 462, 543
BfrI CTTAAG 1 cut(s) 361
BisI GCNGC 1 cut(s) 440
BlpI GCTNAGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 441
BmcAI AGTACT 1 cut(s) 527
BmgT120I GGNCC 2 cut(s) 54, 55
BmiI GGNNCC 2 cut(s) 56, 619
BmsI GCATC 1 cut(s) 541
Bpu1102I GCTNAGC 1 cut(s) 106
Bse1I ACTGG 3 cut(s) 125, 296, 533
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 3 cut(s) 125, 296, 533
BseRI GAGGAG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 58
BseXI GCAGC 1 cut(s) 426
BseYI CCCAGC 1 cut(s) 269
BshFI GGCC 2 cut(s) 56, 136
BsmAI GTCTC 3 cut(s) 152, 211, 603
BsnI GGCC 2 cut(s) 56, 136
Bsp120I GGGCCC 1 cut(s) 54
Bsp1286I GDGCHC 2 cut(s) 58, 276
Bsp143I GATC 2 cut(s) 170, 175
Bsp1720I GCTNAGC 1 cut(s) 106
BspANI GGCC 2 cut(s) 56, 136
BspCNI CTCAG 1 cut(s) 460
BspLI GGNNCC 2 cut(s) 56, 619
BspPI GGATC 1 cut(s) 178
BspTI CTTAAG 1 cut(s) 361
BsrI ACTGG 3 cut(s) 125, 296, 533
BssMI GATC 2 cut(s) 170, 175
Bst6I CTCTTC 3 cut(s) 209, 420, 513
BstAFI CTTAAG 1 cut(s) 361
BstDEI CTNAG 3 cut(s) 106, 390, 468
BstKTI GATC 2 cut(s) 173, 178
BstMAI GTCTC 3 cut(s) 152, 211, 603
BstMBI GATC 2 cut(s) 170, 175
BstSLI GKGCMC 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 426
BstX2I RGATCY 1 cut(s) 170
BstXI CCANNNNNNTGG 1 cut(s) 496
BstYI RGATCY 1 cut(s) 170
BsuRI GGCC 2 cut(s) 56, 136
BtsIMutI CAGTG 2 cut(s) 118, 465
Cfr13I GGNCC 2 cut(s) 54, 55
Csp6I GTAC 2 cut(s) 198, 526
CviJI RGCY 9 cut(s) 56, 94, 110, 136, 254, 269, 274, 360, 484
CviKI_1 RGCY 9 cut(s) 56, 94, 110, 136, 254, 269, 274, 360, 484
CviQI GTAC 2 cut(s) 198, 526
DdeI CTNAG 3 cut(s) 106, 390, 468
DpnI GATC 2 cut(s) 172, 177
DpnII GATC 2 cut(s) 170, 175
DraI TTTAAA 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 134
Eam1104I CTCTTC 3 cut(s) 209, 420, 513
EarI CTCTTC 3 cut(s) 209, 420, 513
Eco24I GRGCYC 2 cut(s) 58, 276
EcoT38I GRGCYC 2 cut(s) 58, 276
FaiI YATR 3 cut(s) 180, 194, 480
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 440
FriOI GRGCYC 2 cut(s) 58, 276
Fsp4HI GCNGC 1 cut(s) 440
FspBI CTAG 4 cut(s) 357, 422, 462, 543
GluI GCNGC 1 cut(s) 440
GsaI CCCAGC 1 cut(s) 273
HaeIII GGCC 2 cut(s) 56, 136
HinfI GANTC 5 cut(s) 242, 260, 384, 546, 568
HphI GGTGA 2 cut(s) 80, 146
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 3 cut(s) 175, 265, 537
Hpy188III TCNNGA 3 cut(s) 277, 422, 543
Hpy8I GTNNAC 1 cut(s) 48
HpyCH4V TGCA 1 cut(s) 442
HpyF3I CTNAG 3 cut(s) 106, 390, 468
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 2 cut(s) 170, 175
LmnI GCTCC 1 cut(s) 372
LpnPI CCDG 9 cut(s) 29, 80, 106, 255, 277, 514, 548, 591, 591
Lsp1109I GCAGC 1 cut(s) 426
LweI GCATC 1 cut(s) 541
MaeI CTAG 4 cut(s) 357, 422, 462, 543
MaeIII GTNAC 3 cut(s) 68, 395, 510
MalI GATC 2 cut(s) 172, 177
MboI GATC 2 cut(s) 170, 175
MboII GAAGA 3 cut(s) 226, 437, 530
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 2 cut(s) 58, 276
MlsI TGGCCA 1 cut(s) 136
MluCI AATT 4 cut(s) 10, 75, 325, 367
MluNI TGGCCA 1 cut(s) 136
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 6 cut(s) 167, 259, 277, 280, 320, 531
Mox20I TGGCCA 1 cut(s) 136
MroXI GAANNNNTTC 1 cut(s) 383
MscI TGGCCA 1 cut(s) 136
MseI TTAA 6 cut(s) 33, 74, 234, 362, 411, 557
Msp20I TGGCCA 1 cut(s) 136
MspCI CTTAAG 1 cut(s) 361
NdeII GATC 2 cut(s) 170, 175
NlaIV GGNNCC 2 cut(s) 56, 619
NmuCI GTSAC 1 cut(s) 68
PdmI GAANNNNTTC 1 cut(s) 383
PfeI GAWTC 4 cut(s) 260, 384, 546, 568
PkrI GCNGC 1 cut(s) 441
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 56, 619
PspOMI GGGCCC 1 cut(s) 54
PspPI GGNCC 2 cut(s) 54, 55
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 2 cut(s) 199, 527
RsaNI GTAC 2 cut(s) 198, 526
SaqAI TTAA 6 cut(s) 33, 74, 234, 362, 411, 557
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 2 cut(s) 170, 175
Sau96I GGNCC 2 cut(s) 54, 55
ScaI AGTACT 1 cut(s) 527
SchI GAGTC 1 cut(s) 251
SduI GDGCHC 2 cut(s) 58, 276
SfaNI GCATC 1 cut(s) 541
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 4 cut(s) 10, 75, 325, 367
SspMI CTAG 4 cut(s) 357, 422, 462, 543
TasI AATT 4 cut(s) 10, 75, 325, 367
TatI WGTACW 2 cut(s) 197, 525
TfiI GAWTC 4 cut(s) 260, 384, 546, 568
Tru1I TTAA 6 cut(s) 33, 74, 234, 362, 411, 557
Tru9I TTAA 6 cut(s) 33, 74, 234, 362, 411, 557
TscAI CASTG 2 cut(s) 125, 472
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 1 cut(s) 439
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 17, 577
TspRI CASTG 2 cut(s) 125, 472
Vha464I CTTAAG 1 cut(s) 361
XbaI TCTAGA 2 cut(s) 421, 542
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 4 cut(s) 357, 422, 462, 543
ZrmI AGTACT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.