Rh5CG263800

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000147
Physical Location & Seq
Forward (+)
28161647 .. 28161898
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG263800.1

Sequence Viewer

Length: 252 bp
ATGGACAAGATGGCTCTGTATGATCTAAATTTCTCTAGCCAAAATTCACTTGGGAGAATACAAGAAGATATTGATGAGCTCATTCGTGAGCGCCTCGACAATGCAATTGTGAATACCAGCTGGCTAAGCTCCTGGCTGGACTCTTTTGTGCTTCATGAGCCACTTATTGGTTCTGACCACTGTCCTTTAGTTGTTCACACTCAACCTCGCATGTCAAAGGGCCCGAAACCTTTTCGATTTGAAGTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

83

Amino Acids

9.56

Weight (kDa)

5.14

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 167
AcsI RAATTY 2 cut(s) 28, 43
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 3 cut(s) 79, 120, 129
AluI AGCT 3 cut(s) 79, 120, 129
Alw21I GWGCWC 1 cut(s) 81
AoxI GGCC 1 cut(s) 220
ApaI GGGCCC 1 cut(s) 224
ApoI RAATTY 2 cut(s) 28, 43
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 2 cut(s) 220, 221
BaeGI GKGCMC 1 cut(s) 224
BanII GRGCYC 2 cut(s) 81, 224
Bbv12I GWGCWC 1 cut(s) 81
BccI CCATC 1 cut(s) 4
BciT130I CCWGG 1 cut(s) 133
BfaI CTAG 2 cut(s) 36, 250
BfoI RGCGCY 1 cut(s) 94
BlpI GCTNAGC 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 220, 221
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 133
BoxI GACNNNNGTC 1 cut(s) 180
Bpu1102I GCTNAGC 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 167
BseBI CCWGG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 167
BseSI GKGCMC 1 cut(s) 224
BshFI GGCC 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 167
BsnI GGCC 1 cut(s) 222
Bsp120I GGGCCC 1 cut(s) 220
Bsp1286I GDGCHC 2 cut(s) 81, 224
Bsp143I GATC 1 cut(s) 22
Bsp1720I GCTNAGC 1 cut(s) 125
BspANI GGCC 1 cut(s) 222
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 222
BssMI GATC 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 2 cut(s) 126, 157
BstNI CCWGG 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 214
BstPAI GACNNNNGTC 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 131
BstSLI GKGCMC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 122
CciI TCATGA 1 cut(s) 154
CfoI GCGC 1 cut(s) 93
Cfr13I GGNCC 2 cut(s) 220, 221
CviAII CATG 2 cut(s) 155, 211
CviJI RGCY 9 cut(s) 14, 39, 79, 120, 124, 129, 136, 160, 222
CviKI_1 RGCY 9 cut(s) 14, 39, 79, 120, 124, 129, 136, 160, 222
DdeI CTNAG 1 cut(s) 125
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 2 cut(s) 81, 224
Eco53kI GAGCTC 1 cut(s) 79
EcoICRI GAGCTC 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 131
EcoT38I GRGCYC 2 cut(s) 81, 224
FaeI CATG 2 cut(s) 158, 214
FaiI YATR 3 cut(s) 21, 156, 212
FatI CATG 2 cut(s) 154, 210
FriOI GRGCYC 2 cut(s) 81, 224
FspBI CTAG 2 cut(s) 36, 250
GlaI GCGC 1 cut(s) 92
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 1 cut(s) 222
HhaI GCGC 1 cut(s) 93
Hin1II CATG 2 cut(s) 158, 214
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 2 cut(s) 86, 155
Hpy8I GTNNAC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 157
HpyF3I CTNAG 1 cut(s) 125
Hsp92II CATG 2 cut(s) 158, 214
HspAI GCGC 1 cut(s) 91
Kzo9I GATC 1 cut(s) 22
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 5 cut(s) 106, 118, 122, 130, 145
MaeI CTAG 2 cut(s) 36, 250
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 1 cut(s) 77
MfeI CAATTG 1 cut(s) 105
MhlI GDGCHC 2 cut(s) 81, 224
MluCI AATT 3 cut(s) 28, 43, 105
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 2 cut(s) 104, 216
MspA1I CMGCKG 1 cut(s) 120
MspR9I CCNGG 1 cut(s) 133
MunI CAATTG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 2 cut(s) 126, 157
NdeII GATC 1 cut(s) 22
NlaIII CATG 2 cut(s) 158, 214
NlaIV GGNNCC 1 cut(s) 222
NspI RCATGY 1 cut(s) 214
PagI TCATGA 1 cut(s) 154
PflMI CCANNNNNTGG 1 cut(s) 167
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PshAI GACNNNNGTC 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 222
PspOMI GGGCCC 1 cut(s) 220
PspPI GGNCC 2 cut(s) 220, 221
PvuII CAGCTG 1 cut(s) 120
SacI GAGCTC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 2 cut(s) 220, 221
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 2 cut(s) 81, 224
SetI ASST 5 cut(s) 81, 122, 131, 208, 232
Sse9I AATT 3 cut(s) 28, 43, 105
SspMI CTAG 2 cut(s) 36, 250
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 182
TaqI TCGA 2 cut(s) 96, 235
TasI AATT 3 cut(s) 28, 43, 105
TscAI CASTG 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 1 cut(s) 185
Van91I CCANNNNNTGG 1 cut(s) 167
XapI RAATTY 2 cut(s) 28, 43
XceI RCATGY 1 cut(s) 214
XcmI CCANNNNNNNNNTGG 1 cut(s) 47
XspI CTAG 2 cut(s) 36, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.