ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF1685 | PF07939 | 47 - 97 | 8.9e-23 | Protein of unknown function (DUF1685) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 244 |
| AccII | CGCG | 1 cut(s) | 15 |
| AccIII | TCCGGA | 1 cut(s) | 380 |
| AciI | CCGC | 6 cut(s) | 23, 112, 124, 127, 308, 359 |
| AgsI | TTSAA | 1 cut(s) | 277 |
| AjnI | CCWGG | 1 cut(s) | 50 |
| AluBI | AGCT | 1 cut(s) | 181 |
| AluI | AGCT | 1 cut(s) | 181 |
| Alw26I | GTCTC | 2 cut(s) | 71, 122 |
| Aor13HI | TCCGGA | 1 cut(s) | 380 |
| ApeKI | GCWGC | 3 cut(s) | 85, 129, 268 |
| AspLEI | GCGC | 2 cut(s) | 17, 343 |
| AsuHPI | GGTGA | 2 cut(s) | 192, 328 |
| BbvI | GCAGC | 3 cut(s) | 97, 141, 280 |
| BciT130I | CCWGG | 1 cut(s) | 52 |
| BcoDI | GTCTC | 2 cut(s) | 71, 122 |
| BfuAI | ACCTGC | 1 cut(s) | 244 |
| BisI | GCNGC | 4 cut(s) | 86, 127, 130, 269 |
| BlsI | GCNGC | 4 cut(s) | 87, 128, 131, 270 |
| Bme1390I | CCNGG | 1 cut(s) | 52 |
| BmrFI | CCNGG | 1 cut(s) | 52 |
| BmsI | GCATC | 1 cut(s) | 295 |
| BsaWI | WCCGGW | 1 cut(s) | 380 |
| BseAI | TCCGGA | 1 cut(s) | 380 |
| BseBI | CCWGG | 1 cut(s) | 52 |
| BseGI | GGATG | 1 cut(s) | 307 |
| BseRI | GAGGAG | 1 cut(s) | 89 |
| BseXI | GCAGC | 3 cut(s) | 97, 141, 280 |
| BseYI | CCCAGC | 1 cut(s) | 181 |
| Bsh1236I | CGCG | 1 cut(s) | 15 |
| BsiSI | CCGG | 2 cut(s) | 59, 381 |
| BsmAI | GTCTC | 2 cut(s) | 71, 122 |
| Bsp13I | TCCGGA | 1 cut(s) | 380 |
| BspACI | CCGC | 6 cut(s) | 23, 112, 124, 127, 308, 359 |
| BspEI | TCCGGA | 1 cut(s) | 380 |
| BspFNI | CGCG | 1 cut(s) | 15 |
| BspMI | ACCTGC | 1 cut(s) | 244 |
| BspQI | GCTCTTC | 1 cut(s) | 89 |
| Bst2UI | CCWGG | 1 cut(s) | 52 |
| Bst6I | CTCTTC | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 2 cut(s) | 110, 172 |
| BstF5I | GGATG | 1 cut(s) | 307 |
| BstFNI | CGCG | 1 cut(s) | 15 |
| BstHHI | GCGC | 2 cut(s) | 17, 343 |
| BstMAI | GTCTC | 2 cut(s) | 71, 122 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 105, 135, 245, 254, 340 |
| BstNI | CCWGG | 1 cut(s) | 52 |
| BstNSI | RCATGY | 1 cut(s) | 112 |
| BstSCI | CCNGG | 1 cut(s) | 50 |
| BstUI | CGCG | 1 cut(s) | 15 |
| BstV1I | GCAGC | 3 cut(s) | 97, 141, 280 |
| BtsCI | GGATG | 1 cut(s) | 307 |
| BtsI | GCAGTG | 1 cut(s) | 341 |
| BtsIMutI | CAGTG | 1 cut(s) | 341 |
| BveI | ACCTGC | 1 cut(s) | 244 |
| Cac8I | GCNNGC | 2 cut(s) | 110, 172 |
| CfoI | GCGC | 2 cut(s) | 17, 343 |
| CseI | GACGC | 1 cut(s) | 77 |
| CviAII | CATG | 3 cut(s) | 81, 109, 254 |
| CviJI | RGCY | 3 cut(s) | 170, 181, 248 |
| CviKI_1 | RGCY | 3 cut(s) | 170, 181, 248 |
| DraI | TTTAAA | 1 cut(s) | 261 |
| Eam1104I | CTCTTC | 1 cut(s) | 89 |
| EarI | CTCTTC | 1 cut(s) | 89 |
| EcoRII | CCWGG | 1 cut(s) | 50 |
| FaeI | CATG | 3 cut(s) | 84, 112, 257 |
| FaiI | YATR | 4 cut(s) | 65, 82, 110, 255 |
| FatI | CATG | 3 cut(s) | 80, 108, 253 |
| Fnu4HI | GCNGC | 4 cut(s) | 86, 127, 130, 269 |
| FokI | GGATG | 1 cut(s) | 314 |
| Fsp4HI | GCNGC | 4 cut(s) | 86, 127, 130, 269 |
| GlaI | GCGC | 2 cut(s) | 16, 342 |
| GluI | GCNGC | 4 cut(s) | 86, 127, 130, 269 |
| GsaI | CCCAGC | 1 cut(s) | 185 |
| HapII | CCGG | 2 cut(s) | 59, 381 |
| HgaI | GACGC | 1 cut(s) | 77 |
| HhaI | GCGC | 2 cut(s) | 17, 343 |
| Hin1II | CATG | 3 cut(s) | 84, 112, 257 |
| Hin6I | GCGC | 2 cut(s) | 15, 341 |
| HinP1I | GCGC | 2 cut(s) | 15, 341 |
| HinfI | GANTC | 3 cut(s) | 115, 186, 197 |
| HpaII | CCGG | 2 cut(s) | 59, 381 |
| HphI | GGTGA | 2 cut(s) | 192, 328 |
| Hpy188I | TCNGA | 3 cut(s) | 7, 93, 145 |
| Hpy188III | TCNNGA | 1 cut(s) | 381 |
| HpyAV | CCTTC | 1 cut(s) | 290 |
| HpyCH4V | TGCA | 2 cut(s) | 174, 239 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 105, 135, 245, 254, 340 |
| Hsp92II | CATG | 3 cut(s) | 84, 112, 257 |
| HspAI | GCGC | 2 cut(s) | 15, 341 |
| Kpn2I | TCCGGA | 1 cut(s) | 380 |
| LguI | GCTCTTC | 1 cut(s) | 89 |
| LpnPI | CCDG | 8 cut(s) | 37, 64, 72, 167, 184, 216, 249, 367 |
| Lsp1109I | GCAGC | 3 cut(s) | 97, 141, 280 |
| LweI | GCATC | 1 cut(s) | 295 |
| MboII | GAAGA | 4 cut(s) | 106, 331, 366, 369 |
| MfeI | CAATTG | 2 cut(s) | 100, 344 |
| MluCI | AATT | 2 cut(s) | 100, 344 |
| MlyI | GAGTC | 1 cut(s) | 124 |
| MnlI | CCTC | 8 cut(s) | 21, 36, 42, 67, 151, 238, 304, 318 |
| MroI | TCCGGA | 1 cut(s) | 380 |
| MseI | TTAA | 2 cut(s) | 260, 329 |
| MspI | CCGG | 2 cut(s) | 59, 381 |
| MspR9I | CCNGG | 1 cut(s) | 52 |
| MunI | CAATTG | 2 cut(s) | 100, 344 |
| MvaI | CCWGG | 1 cut(s) | 52 |
| MvnI | CGCG | 1 cut(s) | 15 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 105, 135, 245, 254, 340 |
| NlaIII | CATG | 3 cut(s) | 84, 112, 257 |
| NspI | RCATGY | 1 cut(s) | 112 |
| PaeI | GCATGC | 1 cut(s) | 112 |
| PciSI | GCTCTTC | 1 cut(s) | 89 |
| PfeI | GAWTC | 2 cut(s) | 186, 197 |
| PkrI | GCNGC | 4 cut(s) | 87, 128, 131, 270 |
| PleI | GAGTC | 1 cut(s) | 123 |
| PpsI | GAGTC | 1 cut(s) | 123 |
| Psp6I | CCWGG | 1 cut(s) | 50 |
| PspFI | CCCAGC | 1 cut(s) | 181 |
| PspGI | CCWGG | 1 cut(s) | 50 |
| SapI | GCTCTTC | 1 cut(s) | 89 |
| SaqAI | TTAA | 2 cut(s) | 260, 329 |
| SatI | GCNGC | 4 cut(s) | 86, 127, 130, 269 |
| SchI | GAGTC | 1 cut(s) | 124 |
| ScrFI | CCNGG | 1 cut(s) | 52 |
| SetI | ASST | 6 cut(s) | 34, 183, 233, 238, 315, 329 |
| SfaNI | GCATC | 1 cut(s) | 295 |
| SphI | GCATGC | 1 cut(s) | 112 |
| Sse9I | AATT | 2 cut(s) | 100, 344 |
| SsiI | CCGC | 6 cut(s) | 23, 112, 124, 127, 308, 359 |
| StyD4I | CCNGG | 1 cut(s) | 50 |
| TaqI | TCGA | 2 cut(s) | 28, 210 |
| TasI | AATT | 2 cut(s) | 100, 344 |
| TauI | GCSGC | 1 cut(s) | 129 |
| TfiI | GAWTC | 2 cut(s) | 186, 197 |
| Tru1I | TTAA | 2 cut(s) | 260, 329 |
| Tru9I | TTAA | 2 cut(s) | 260, 329 |
| TscAI | CASTG | 1 cut(s) | 341 |
| TseI | GCWGC | 3 cut(s) | 85, 129, 268 |
| TspGWI | ACGGA | 1 cut(s) | 59 |
| TspRI | CASTG | 1 cut(s) | 341 |
| XceI | RCATGY | 1 cut(s) | 112 |