Rmu_sc0000808.1_g000003

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000808.1
OG0000147
Physical Location & Seq
Reverse (-)
7847 .. 8534
688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000808.1_g000003.1.cds

Sequence Viewer

Length: 540 bp
atgatgagggttcctcccctcaaggcggtggctgctggccttcgacagccgcggggaacccatgatacaactatcatggaactgtcatggcttgggatggcctatgacatccaaagcgctcaaagagctaattttgcaacatcggtgcaggtcctgttcaaatccaagaatctcattgatacggtggtgggcctccctgatggctctcacattcgtatctcttggttctatggacctccaaataatcaattcaaagcctctttttggaacaacctcaataatcttgtaggttctattgatctgccctggctttgtgcgggggacttcaatgagttcctttggccgcatgagaaggaagggggaaacccctggaatcctggaaagagacgatttcttcgtcagtttatggatgcaaatgagctcatcgatgttcagttcaaaggtcaaaagttcacttggtccaataattggccagatggaggccttatcaagattcggctggatagaggagttgttgacacaaaatggcttgagagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

179

Amino Acids

20.53

Weight (kDa)

9.37

Isoelectric Point (pI)

21.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 139
AccB7I CCANNNNNTGG 1 cut(s) 468
AccII CGCG 1 cut(s) 52
AciI CCGC 5 cut(s) 26, 50, 52, 317, 344
AcoI YGGCCR 2 cut(s) 341, 470
AfeI AGCGCT 1 cut(s) 118
AfiI CCNNNNNNNGG 4 cut(s) 25, 264, 468, 479
AgsI TTSAA 4 cut(s) 160, 253, 328, 439
AjnI CCWGG 3 cut(s) 305, 368, 376
AluBI AGCT 2 cut(s) 128, 421
AluI AGCT 2 cut(s) 128, 421
Alw21I GWGCWC 1 cut(s) 423
Alw26I GTCTC 1 cut(s) 379
AlwNI CAGNNNCTG 1 cut(s) 154
Aor51HI AGCGCT 1 cut(s) 118
AoxI GGCC 6 cut(s) 37, 99, 190, 341, 470, 481
ApeKI GCWGC 1 cut(s) 32
ArsI GACNNNNNNTTYG 2 cut(s) 378, 410
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 4 cut(s) 151, 190, 233, 459
AvaII GGWCC 3 cut(s) 151, 233, 459
BaeI ACNNNNGTAYC 4 cut(s) 171, 199, 204, 232
BalI TGGCCA 1 cut(s) 472
BanII GRGCYC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 1 cut(s) 19
BccI CCATC 3 cut(s) 91, 194, 470
BciT130I CCWGG 3 cut(s) 307, 370, 378
BcoDI GTCTC 1 cut(s) 379
BfoI RGCGCY 1 cut(s) 120
BfuAI ACCTGC 1 cut(s) 139
BisI GCNGC 3 cut(s) 33, 50, 344
BlsI GCNGC 3 cut(s) 34, 51, 345
Bme1390I CCNGG 3 cut(s) 307, 370, 378
Bme18I GGWCC 3 cut(s) 151, 233, 459
BmgT120I GGNCC 4 cut(s) 151, 190, 233, 459
BmiI GGNNCC 2 cut(s) 12, 58
BmrFI CCNGG 3 cut(s) 307, 370, 378
BmsI GCATC 1 cut(s) 400
BplI GAGNNNNNCTC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 5
Bsa29I ATCGAT 1 cut(s) 426
BsaJI CCNNGG 3 cut(s) 50, 305, 368
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 264, 468, 479
BseBI CCWGG 3 cut(s) 307, 370, 378
BseCI ATCGAT 1 cut(s) 426
BseDI CCNNGG 3 cut(s) 50, 305, 368
BseGI GGATG 3 cut(s) 102, 108, 415
BseLI CCNNNNNNNGG 4 cut(s) 25, 264, 468, 479
BseRI GAGGAG 1 cut(s) 522
BseXI GCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 167
Bsh1236I CGCG 1 cut(s) 52
BshFI GGCC 6 cut(s) 39, 101, 192, 343, 472, 483
BshVI ATCGAT 1 cut(s) 426
BsiHKAI GWGCWC 1 cut(s) 423
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 4 cut(s) 25, 264, 468, 479
BsmAI GTCTC 1 cut(s) 379
BsmBI CGTCTC 1 cut(s) 379
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 6 cut(s) 39, 101, 192, 343, 472, 483
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 1 cut(s) 298
BspACI CCGC 5 cut(s) 26, 50, 52, 317, 344
BspANI GGCC 6 cut(s) 39, 101, 192, 343, 472, 483
BspDI ATCGAT 1 cut(s) 426
BspFNI CGCG 1 cut(s) 52
BspLI GGNNCC 2 cut(s) 12, 58
BspMI ACCTGC 1 cut(s) 139
BssECI CCNNGG 3 cut(s) 50, 305, 368
BssMI GATC 1 cut(s) 298
Bst2UI CCWGG 3 cut(s) 307, 370, 378
Bst4CI ACNGT 2 cut(s) 84, 184
BstC8I GCNNGC 1 cut(s) 37
BstDSI CCRYGG 1 cut(s) 50
BstF5I GGATG 3 cut(s) 102, 108, 415
BstFNI CGCG 1 cut(s) 52
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 1 cut(s) 301
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 3 cut(s) 32, 125, 134
BstNI CCWGG 3 cut(s) 307, 370, 378
BstSCI CCNGG 3 cut(s) 305, 368, 376
BstUI CGCG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 19
Bsu15I ATCGAT 1 cut(s) 426
BsuRI GGCC 6 cut(s) 39, 101, 192, 343, 472, 483
BsuTUI ATCGAT 1 cut(s) 426
BtgI CCRYGG 1 cut(s) 50
BtsCI GGATG 3 cut(s) 102, 108, 415
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 37
CaiI CAGNNNCTG 1 cut(s) 154
CfoI GCGC 1 cut(s) 119
Cfr13I GGNCC 4 cut(s) 151, 190, 233, 459
Cfr42I CCGCGG 1 cut(s) 53
ClaI ATCGAT 1 cut(s) 426
CviAII CATG 4 cut(s) 62, 76, 87, 347
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
EaeI YGGCCR 2 cut(s) 341, 470
Ecl136II GAGCTC 1 cut(s) 421
Eco147I AGGCCT 1 cut(s) 483
Eco24I GRGCYC 1 cut(s) 423
Eco47I GGWCC 3 cut(s) 151, 233, 459
Eco47III AGCGCT 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 421
EcoICRI GAGCTC 1 cut(s) 421
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 3 cut(s) 305, 368, 376
EcoT38I GRGCYC 1 cut(s) 423
Esp3I CGTCTC 1 cut(s) 379
FaeI CATG 4 cut(s) 65, 79, 90, 350
FaiI YATR 7 cut(s) 63, 77, 88, 105, 231, 348, 407
FaqI GGGAC 1 cut(s) 335
FatI CATG 4 cut(s) 61, 75, 86, 346
FauI CCCGC 2 cut(s) 45, 310
Fnu4HI GCNGC 3 cut(s) 33, 50, 344
FokI GGATG 3 cut(s) 95, 109, 422
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 3 cut(s) 33, 50, 344
GlaI GCGC 1 cut(s) 118
GluI GCNGC 3 cut(s) 33, 50, 344
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 6 cut(s) 39, 101, 192, 343, 472, 483
HhaI GCGC 1 cut(s) 119
Hin1II CATG 4 cut(s) 65, 79, 90, 350
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HinfI GANTC 3 cut(s) 169, 373, 493
Hpy166II GTNNAC 2 cut(s) 453, 517
Hpy188III TCNNGA 1 cut(s) 490
Hpy8I GTNNAC 2 cut(s) 453, 517
HpyAV CCTTC 3 cut(s) 50, 346, 350
HpyCH4III ACNGT 2 cut(s) 84, 184
HpyCH4V TGCA 3 cut(s) 137, 148, 413
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 125, 134
Hsp92II CATG 4 cut(s) 65, 79, 90, 350
HspAI GCGC 1 cut(s) 117
KspI CCGCGG 1 cut(s) 53
Kzo9I GATC 1 cut(s) 298
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 1 cut(s) 400
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 1 cut(s) 386
MhlI GDGCHC 1 cut(s) 423
MlsI TGGCCA 1 cut(s) 472
MluCI AATT 3 cut(s) 130, 248, 466
MluNI TGGCCA 1 cut(s) 472
MnlI CCTC 8 cut(s) 24, 29, 203, 246, 268, 284, 473, 500
Mox20I TGGCCA 1 cut(s) 472
MscI TGGCCA 1 cut(s) 472
Msp20I TGGCCA 1 cut(s) 472
MspA1I CMGCKG 1 cut(s) 52
MspR9I CCNGG 3 cut(s) 307, 370, 378
MvaI CCWGG 3 cut(s) 307, 370, 378
MvnI CGCG 1 cut(s) 52
MwoI GCNNNNNNNGC 3 cut(s) 32, 125, 134
NdeII GATC 1 cut(s) 298
NlaIII CATG 4 cut(s) 65, 79, 90, 350
NlaIV GGNNCC 2 cut(s) 12, 58
PceI AGGCCT 1 cut(s) 483
PcsI WCGNNNNNNNCGW 1 cut(s) 394
PfeI GAWTC 3 cut(s) 169, 373, 493
PflMI CCANNNNNTGG 1 cut(s) 468
PfoI TCCNGGA 1 cut(s) 376
PkrI GCNGC 3 cut(s) 34, 51, 345
PpuMI RGGWCCY 1 cut(s) 151
Psp124BI GAGCTC 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 3 cut(s) 305, 368, 376
PspGI CCWGG 3 cut(s) 305, 368, 376
PspN4I GGNNCC 2 cut(s) 12, 58
PspPI GGNCC 4 cut(s) 151, 190, 233, 459
PspPPI RGGWCCY 1 cut(s) 151
PsrI GAACNNNNNNTAC 2 cut(s) 49, 81
PstNI CAGNNNCTG 1 cut(s) 154
SacI GAGCTC 1 cut(s) 423
SacII CCGCGG 1 cut(s) 53
SatI GCNGC 3 cut(s) 33, 50, 344
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 4 cut(s) 151, 190, 233, 459
ScrFI CCNGG 3 cut(s) 307, 370, 378
SduI GDGCHC 1 cut(s) 423
SetI ASST 7 cut(s) 130, 153, 238, 276, 292, 423, 445
SfaNI GCATC 1 cut(s) 400
Sfr303I CCGCGG 1 cut(s) 53
SgrBI CCGCGG 1 cut(s) 53
SinI GGWCC 3 cut(s) 151, 233, 459
SmlI CTYRAG 2 cut(s) 20, 530
SmoI CTYRAG 2 cut(s) 20, 530
Sse9I AATT 3 cut(s) 130, 248, 466
SseBI AGGCCT 1 cut(s) 483
SsiI CCGC 5 cut(s) 26, 50, 52, 317, 344
SstI GAGCTC 1 cut(s) 423
StuI AGGCCT 1 cut(s) 483
StyD4I CCNGG 3 cut(s) 305, 368, 376
TaaI ACNGT 2 cut(s) 84, 184
TaqI TCGA 2 cut(s) 43, 426
TasI AATT 3 cut(s) 130, 248, 466
TauI GCSGC 2 cut(s) 52, 346
TfiI GAWTC 3 cut(s) 169, 373, 493
TseI GCWGC 1 cut(s) 32
Van91I CCANNNNNTGG 1 cut(s) 468
VpaK11BI GGWCC 3 cut(s) 151, 233, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.