Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 318, 330, 341, 590 |
| AclWI | GGATC | 6 cut(s) | 101, 179, 192, 425, 438, 558 |
| AcsI | RAATTY | 1 cut(s) | 517 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 336, 347, 596 |
| AgsI | TTSAA | 4 cut(s) | 42, 151, 379, 414 |
| AjnI | CCWGG | 1 cut(s) | 358 |
| AluBI | AGCT | 3 cut(s) | 28, 290, 467 |
| AluI | AGCT | 3 cut(s) | 28, 290, 467 |
| Alw26I | GTCTC | 1 cut(s) | 360 |
| AlwI | GGATC | 6 cut(s) | 101, 179, 192, 425, 438, 558 |
| AoxI | GGCC | 2 cut(s) | 320, 338 |
| ApeKI | GCWGC | 1 cut(s) | 62 |
| ApoI | RAATTY | 1 cut(s) | 517 |
| AseI | ATTAAT | 1 cut(s) | 224 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 608 |
| AspS9I | GGNCC | 3 cut(s) | 320, 487, 584 |
| AsuHPI | GGTGA | 3 cut(s) | 116, 166, 545 |
| AvaII | GGWCC | 2 cut(s) | 487, 584 |
| BamHI | GGATCC | 2 cut(s) | 184, 430 |
| BauI | CACGAG | 1 cut(s) | 345 |
| BbvI | GCAGC | 1 cut(s) | 49 |
| BccI | CCATC | 3 cut(s) | 120, 431, 590 |
| BciT130I | CCWGG | 1 cut(s) | 360 |
| BclI | TGATCA | 1 cut(s) | 157 |
| BcoDI | GTCTC | 1 cut(s) | 360 |
| BfaI | CTAG | 3 cut(s) | 86, 491, 613 |
| BisI | GCNGC | 2 cut(s) | 63, 341 |
| BlsI | GCNGC | 2 cut(s) | 64, 342 |
| Bme1390I | CCNGG | 1 cut(s) | 360 |
| Bme18I | GGWCC | 2 cut(s) | 487, 584 |
| BmgT120I | GGNCC | 3 cut(s) | 320, 487, 584 |
| BmiI | GGNNCC | 2 cut(s) | 186, 432 |
| BmrFI | CCNGG | 1 cut(s) | 360 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 115, 145 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 336, 347, 596 |
| BseBI | CCWGG | 1 cut(s) | 360 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseGI | GGATG | 1 cut(s) | 502 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 336, 347, 596 |
| BseXI | GCAGC | 1 cut(s) | 49 |
| BseYI | CCCAGC | 1 cut(s) | 24 |
| BshFI | GGCC | 2 cut(s) | 322, 340 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiSI | CCGG | 1 cut(s) | 113 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 336, 347, 596 |
| BsmAI | GTCTC | 1 cut(s) | 360 |
| BsmBI | CGTCTC | 1 cut(s) | 360 |
| BsnI | GGCC | 2 cut(s) | 322, 340 |
| Bsp143I | GATC | 5 cut(s) | 106, 157, 184, 430, 550 |
| BspACI | CCGC | 4 cut(s) | 318, 330, 341, 590 |
| BspANI | GGCC | 2 cut(s) | 322, 340 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspLI | GGNNCC | 2 cut(s) | 186, 432 |
| BspPI | GGATC | 6 cut(s) | 101, 179, 192, 425, 438, 558 |
| BssMI | GATC | 5 cut(s) | 106, 157, 184, 430, 550 |
| BssSI | CACGAG | 1 cut(s) | 345 |
| Bst2BI | CACGAG | 1 cut(s) | 345 |
| Bst2UI | CCWGG | 1 cut(s) | 360 |
| Bst4CI | ACNGT | 1 cut(s) | 584 |
| BstC8I | GCNNGC | 2 cut(s) | 30, 320 |
| BstDEI | CTNAG | 1 cut(s) | 513 |
| BstF5I | GGATG | 1 cut(s) | 502 |
| BstKTI | GATC | 5 cut(s) | 109, 160, 187, 433, 553 |
| BstMAI | GTCTC | 1 cut(s) | 360 |
| BstMBI | GATC | 5 cut(s) | 106, 157, 184, 430, 550 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 315 |
| BstNI | CCWGG | 1 cut(s) | 360 |
| BstSCI | CCNGG | 1 cut(s) | 358 |
| BstV1I | GCAGC | 1 cut(s) | 49 |
| BstX2I | RGATCY | 2 cut(s) | 184, 430 |
| BstYI | RGATCY | 2 cut(s) | 184, 430 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuRI | GGCC | 2 cut(s) | 322, 340 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtsCI | GGATG | 1 cut(s) | 502 |
| Cac8I | GCNNGC | 2 cut(s) | 30, 320 |
| Cfr13I | GGNCC | 3 cut(s) | 320, 487, 584 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| CviAII | CATG | 2 cut(s) | 229, 566 |
| DdeI | CTNAG | 1 cut(s) | 513 |
| DpnI | GATC | 5 cut(s) | 108, 159, 186, 432, 552 |
| DpnII | GATC | 5 cut(s) | 106, 157, 184, 430, 550 |
| Eco32I | GATATC | 1 cut(s) | 172 |
| Eco47I | GGWCC | 2 cut(s) | 487, 584 |
| EcoO109I | RGGNCCY | 1 cut(s) | 487 |
| EcoRII | CCWGG | 1 cut(s) | 358 |
| EcoRV | GATATC | 1 cut(s) | 172 |
| Esp3I | CGTCTC | 1 cut(s) | 360 |
| FaeI | CATG | 2 cut(s) | 232, 569 |
| FatI | CATG | 2 cut(s) | 228, 565 |
| FauI | CCCGC | 1 cut(s) | 311 |
| FauNDI | CATATG | 1 cut(s) | 214 |
| FbaI | TGATCA | 1 cut(s) | 157 |
| Fnu4HI | GCNGC | 2 cut(s) | 63, 341 |
| FokI | GGATG | 1 cut(s) | 509 |
| Fsp4HI | GCNGC | 2 cut(s) | 63, 341 |
| FspBI | CTAG | 3 cut(s) | 86, 491, 613 |
| GluI | GCNGC | 2 cut(s) | 63, 341 |
| GsaI | CCCAGC | 1 cut(s) | 28 |
| HaeIII | GGCC | 2 cut(s) | 322, 340 |
| HapII | CCGG | 1 cut(s) | 113 |
| Hin1II | CATG | 2 cut(s) | 232, 569 |
| HpaII | CCGG | 1 cut(s) | 113 |
| HphI | GGTGA | 3 cut(s) | 116, 166, 545 |
| Hpy166II | GTNNAC | 1 cut(s) | 94 |
| Hpy188III | TCNNGA | 3 cut(s) | 182, 434, 503 |
| Hpy8I | GTNNAC | 1 cut(s) | 94 |
| HpyAV | CCTTC | 1 cut(s) | 95 |
| HpyCH4III | ACNGT | 1 cut(s) | 584 |
| HpyCH4V | TGCA | 2 cut(s) | 191, 302 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 315 |
| HpyF3I | CTNAG | 1 cut(s) | 513 |
| Hsp92II | CATG | 2 cut(s) | 232, 569 |
| Ksp22I | TGATCA | 1 cut(s) | 157 |
| Kzo9I | GATC | 5 cut(s) | 106, 157, 184, 430, 550 |
| LmnI | GCTCC | 1 cut(s) | 253 |
| LpnPI | CCDG | 9 cut(s) | 38, 126, 167, 201, 345, 372, 379, 447, 544 |
| Lsp1109I | GCAGC | 1 cut(s) | 49 |
| MaeI | CTAG | 3 cut(s) | 86, 491, 613 |
| MaeIII | GTNAC | 1 cut(s) | 568 |
| MalI | GATC | 5 cut(s) | 108, 159, 186, 432, 552 |
| MboI | GATC | 5 cut(s) | 106, 157, 184, 430, 550 |
| MboII | GAAGA | 1 cut(s) | 613 |
| MflI | RGATCY | 2 cut(s) | 184, 430 |
| MluCI | AATT | 6 cut(s) | 42, 221, 363, 401, 517, 534 |
| MnlI | CCTC | 5 cut(s) | 120, 341, 452, 541, 597 |
| MroXI | GAANNNNTTC | 1 cut(s) | 608 |
| MseI | TTAA | 1 cut(s) | 224 |
| MspI | CCGG | 1 cut(s) | 113 |
| MspR9I | CCNGG | 1 cut(s) | 360 |
| MvaI | CCWGG | 1 cut(s) | 360 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 315 |
| NdeI | CATATG | 1 cut(s) | 214 |
| NdeII | GATC | 5 cut(s) | 106, 157, 184, 430, 550 |
| NlaIII | CATG | 2 cut(s) | 232, 569 |
| NlaIV | GGNNCC | 2 cut(s) | 186, 432 |
| PdmI | GAANNNNTTC | 1 cut(s) | 608 |
| PfoI | TCCNGGA | 1 cut(s) | 358 |
| PkrI | GCNGC | 2 cut(s) | 64, 342 |
| PpuMI | RGGWCCY | 1 cut(s) | 487 |
| PshBI | ATTAAT | 1 cut(s) | 224 |
| Psp5II | RGGWCCY | 1 cut(s) | 487 |
| Psp6I | CCWGG | 1 cut(s) | 358 |
| PspFI | CCCAGC | 1 cut(s) | 24 |
| PspGI | CCWGG | 1 cut(s) | 358 |
| PspN4I | GGNNCC | 2 cut(s) | 186, 432 |
| PspPI | GGNCC | 3 cut(s) | 320, 487, 584 |
| PspPPI | RGGWCCY | 1 cut(s) | 487 |
| PsuI | RGATCY | 2 cut(s) | 184, 430 |
| SaqAI | TTAA | 1 cut(s) | 224 |
| SatI | GCNGC | 2 cut(s) | 63, 341 |
| Sau3AI | GATC | 5 cut(s) | 106, 157, 184, 430, 550 |
| Sau96I | GGNCC | 3 cut(s) | 320, 487, 584 |
| ScrFI | CCNGG | 1 cut(s) | 360 |
| SetI | ASST | 8 cut(s) | 30, 106, 179, 292, 469, 489, 558, 575 |
| SinI | GGWCC | 2 cut(s) | 487, 584 |
| Sse9I | AATT | 6 cut(s) | 42, 221, 363, 401, 517, 534 |
| SsiI | CCGC | 4 cut(s) | 318, 330, 341, 590 |
| SspMI | CTAG | 3 cut(s) | 86, 491, 613 |
| StyD4I | CCNGG | 1 cut(s) | 358 |
| TaaI | ACNGT | 1 cut(s) | 584 |
| TaqI | TCGA | 1 cut(s) | 525 |
| TasI | AATT | 6 cut(s) | 42, 221, 363, 401, 517, 534 |
| TauI | GCSGC | 1 cut(s) | 343 |
| Tru1I | TTAA | 1 cut(s) | 224 |
| Tru9I | TTAA | 1 cut(s) | 224 |
| TseI | GCWGC | 1 cut(s) | 62 |
| TspDTI | ATGAA | 1 cut(s) | 87 |
| VpaK11BI | GGWCC | 2 cut(s) | 487, 584 |
| VspI | ATTAAT | 1 cut(s) | 224 |
| XapI | RAATTY | 1 cut(s) | 517 |
| XmnI | GAANNNNTTC | 1 cut(s) | 608 |
| XspI | CTAG | 3 cut(s) | 86, 491, 613 |