Rh5DG231100

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000147
Physical Location & Seq
Reverse (-)
26319267 .. 26340330
21064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG231100.1

Sequence Viewer

Length: 1713 bp
ATGATTGATTCCACCACGCCTCCATCTTTTCCATTCTCTCCCACTGTGGTCTCGCACCCTCCAGCCACTTCTTCTCTGTCCCCTTTGGGTCCTAATCTTCCCCCGGCTGTTATTGGAGGTATTTCTGATTATCTTGAGTGTCTCCGCCTCAAACGCCCTCACCATGACGCTGGTGAGAAGGAGGATGCTTCGCATCGTCCGGTCAAATGCTGTTGTCGTACCAAGAAGCAAATGGCAGAAGCTAGAGCTCATGAGGCGCTGCGAGTTCATTCGCTTCCTCCCAAAAAGAGAATACCACGTCATCCCTCTGCTACCGTTTCCAAACATCGTGGCCGGGGACGCCAAGGTAGCCGCAGTAGTGATGTTGCTTCTTCATCCCGGTCTATTCAATCTCCACCTCCTTCAACAATTGTTATTGGCGATACTGTTAATCTGCTTGCTCTTCAACTACAACTGGAGGAAATGCCTCAGAATGTCTATACACCAGCTTTTCTTCCACCAAATTCAGACGCAGCTCCTCCTTGCTTAAATCCAGATTCAATGCCTGATCTGTTTCAAACTCTCTCCCCTTTAACTACGGAGGAAAGTAAAAGGCTTTGGGATGCGATGACTCTTCTTCTCAATCCGATTCCATCCTGGGTGAGAACAGCCCCAGCCGCCATATCAGTTGGAGAATTCGATTCTGCAATACCCACAACAAACGTAGGGGAAGGAACAAGCGACCTTCCTTCTACTTCAGGTTCTGACCCTCCTTCTTCGGAGAACGGCATAGGTTTGTGTTGTAATATCACTTGGGTGTATGGTACTCCCCATGCTTGTGATAAAAATACTTTTTGGAGTTTCTTGTACTCTAGGTTCCCTGCACTATCTTCTCCTTGGTTGTGTCTTGGTGATTTTAATGATGTGTTATGGGTTGATGAGAAATGGGGAGGGGATCCTCCGGCGTTGTGGCGTCGTACTCTTTTCAACAACTTTCTTACCAATGCTCAATTGAGGGATTTATGTTATCATGGACCTTACTTTACTTGGTTTTGTTACCAATTTGGTAGGATCTCTATGAAACAACGGCTTGATCGTTGCTTGGGTAATGCTGCTTGGTGCTTGGCTTGTCCTAATACTCAGGTTTTTCATCTTCCGAAACTTGGTTCCGATCATCGTCCTATTTTACTGGACACAAATCCTACTAACAGTCGATCAGCAAAGATCTTCCGTTTTGAACAATTTTGGACTACATCTCCTGAGTGTATGGATGTTGTTAAGAAAAATTGGTGTTGTGATGTACCTACTGTTCCTTCTCTTCTTTGGGTTAGGAACCTTTTGTCTTGTAAGCGAGCTCTTGCTCGATGGTCCAAGGAGGCCTTCCCTTGTTTTCGGCATCAATCTTTGGATTTGGTTCAGCAGATTGATCAGCTCCATTCGAGTTCGGATTCAAATGTGGTTTCCCAGATTTCTCTCCTGACAGCCAAATTGGATCAATTATGGAACTTGGAAGAAATGTATTGGAAGCAACGTTCTCGTGTGTCTTGCCTTGGAACTCGCCTTCTGCTAAAATGGGTACCTTCTTCGCTCTTCTTCTCTCATTCTTGTTCCACTTTTCGGTTTCTTCAGTTCCTTTCAGTCATGGGTACCTCTGATTTTGCTGAAATTGTTAGGATTTGTTCAATTTTTAAATTTTTTTTTTTCTTTTGTGATGCTAATCTTGAAATATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

570

Amino Acids

64.11

Weight (kDa)

8.37

Isoelectric Point (pI)

58.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 1555, 1625
AccB1I GGYRCC 2 cut(s) 1555, 1625
AciI CCGC 3 cut(s) 145, 352, 657
AclI AACGTT 1 cut(s) 1510
AclWI GGATC 4 cut(s) 929, 942, 1058, 1479
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 3 cut(s) 502, 674, 1670
AcuI CTGAAG 2 cut(s) 720, 1589
AcyI GRCGYC 2 cut(s) 340, 952
AfaI GTAC 7 cut(s) 220, 805, 848, 958, 1281, 1557, 1627
AfiI CCNNNNNNNGG 2 cut(s) 1142, 1596
AjiI CACGTC 1 cut(s) 299
AjnI CCWGG 1 cut(s) 635
AjuI GAANNNNNNNTTGG 2 cut(s) 1343, 1375
AleI CACNNNNGTG 1 cut(s) 794
AloI GAACNNNNNNTCC 2 cut(s) 1495, 1527
AluBI AGCT 6 cut(s) 242, 248, 488, 515, 1334, 1411
AluI AGCT 6 cut(s) 242, 248, 488, 515, 1334, 1411
Alw21I GWGCWC 2 cut(s) 250, 1336
Alw26I GTCTC 2 cut(s) 55, 146
AlwI GGATC 4 cut(s) 929, 942, 1058, 1479
AlwNI CAGNNNCTG 1 cut(s) 743
AoxI GGCC 2 cut(s) 331, 1356
ApeKI GCWGC 3 cut(s) 259, 512, 1091
ApoI RAATTY 3 cut(s) 502, 674, 1670
Asp718I GGTACC 2 cut(s) 1555, 1625
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 3 cut(s) 89, 1013, 1347
AsuC2I CCSGG 3 cut(s) 104, 335, 379
AsuHPI GGTGA 4 cut(s) 152, 185, 652, 902
AvaII GGWCC 3 cut(s) 89, 1013, 1347
BamHI GGATCC 1 cut(s) 934
BanI GGYRCC 2 cut(s) 1555, 1625
BanII GRGCYC 2 cut(s) 250, 1336
BauI CACGAG 1 cut(s) 1515
Bbv12I GWGCWC 2 cut(s) 250, 1336
BbvI GCAGC 3 cut(s) 246, 524, 1078
BccI CCATC 3 cut(s) 31, 640, 1338
BceAI ACGGC 2 cut(s) 781, 1082
BcgI CGANNNNNNTGC 2 cut(s) 1496, 1530
BciT130I CCWGG 1 cut(s) 637
BclI TGATCA 1 cut(s) 1405
BcnI CCSGG 3 cut(s) 104, 335, 379
BcoDI GTCTC 2 cut(s) 55, 146
BfaI CTAG 2 cut(s) 243, 852
BfoI RGCGCY 1 cut(s) 260
BglII AGATCT 1 cut(s) 1203
BisI GCNGC 5 cut(s) 260, 352, 513, 657, 1092
BlsI GCNGC 5 cut(s) 261, 353, 514, 658, 1093
Bme1390I CCNGG 4 cut(s) 104, 335, 379, 637
Bme18I GGWCC 3 cut(s) 89, 1013, 1347
BmgBI CACGTC 1 cut(s) 299
BmgT120I GGNCC 3 cut(s) 89, 1013, 1347
BmiI GGNNCC 7 cut(s) 90, 857, 936, 1147, 1313, 1557, 1627
BmrFI CCNGG 4 cut(s) 104, 335, 379, 637
BmsI GCATC 5 cut(s) 175, 202, 592, 1384, 1681
BpmI CTGGAG 2 cut(s) 45, 476
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 3 cut(s) 104, 335, 379
BsaBI GATNNNNATC 1 cut(s) 1695
BsaHI GRCGYC 2 cut(s) 340, 952
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 7 cut(s) 102, 334, 343, 636, 875, 1350, 1528
BsaWI WCCGGW 1 cut(s) 199
BsaXI ACNNNNNCTCC 3 cut(s) 34, 1219, 1249
Bsc4I CCNNNNNNNGG 2 cut(s) 1142, 1596
Bse1I ACTGG 2 cut(s) 459, 1173
Bse8I GATNNNNATC 1 cut(s) 1695
BseBI CCWGG 1 cut(s) 637
BseDI CCNNGG 7 cut(s) 102, 334, 343, 636, 875, 1350, 1528
BseGI GGATG 6 cut(s) 190, 301, 374, 607, 632, 1255
BseJI GATNNNNATC 1 cut(s) 1695
BseLI CCNNNNNNNGG 2 cut(s) 1142, 1596
BseMII CTCAG 3 cut(s) 482, 1133, 1230
BseNI ACTGG 2 cut(s) 459, 1173
BseRI GAGGAG 1 cut(s) 507
BseXI GCAGC 3 cut(s) 246, 524, 1078
BseYI CCCAGC 1 cut(s) 652
BsgI GTGCAG 1 cut(s) 846
BshFI GGCC 2 cut(s) 333, 1358
BshNI GGYRCC 2 cut(s) 1555, 1625
BsiHKAI GWGCWC 2 cut(s) 250, 1336
BsiSI CCGG 5 cut(s) 104, 200, 334, 379, 941
BslFI GGGAC 2 cut(s) 64, 351
BslI CCNNNNNNNGG 2 cut(s) 1142, 1596
BsmAI GTCTC 2 cut(s) 55, 146
BsmFI GGGAC 2 cut(s) 64, 351
BsnI GGCC 2 cut(s) 333, 1358
Bso31I GGTCTC 1 cut(s) 55
Bsp1286I GDGCHC 2 cut(s) 250, 1336
Bsp143I GATC 9 cut(s) 547, 934, 1050, 1072, 1150, 1193, 1203, 1405, 1471
BspACI CCGC 3 cut(s) 145, 352, 657
BspANI GGCC 2 cut(s) 333, 1358
BspCNI CTCAG 3 cut(s) 481, 1132, 1231
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 7 cut(s) 90, 857, 936, 1147, 1313, 1557, 1627
BspPI GGATC 4 cut(s) 929, 942, 1058, 1479
BspQI GCTCTTC 2 cut(s) 447, 1574
BspT107I GGYRCC 2 cut(s) 1555, 1625
BspTNI GGTCTC 1 cut(s) 55
BsrI ACTGG 2 cut(s) 459, 1173
BssECI CCNNGG 7 cut(s) 102, 334, 343, 636, 875, 1350, 1528
BssMI GATC 9 cut(s) 547, 934, 1050, 1072, 1150, 1193, 1203, 1405, 1471
BssNI GRCGYC 2 cut(s) 340, 952
BssSI CACGAG 1 cut(s) 1515
BssT1I CCWWGG 4 cut(s) 343, 875, 1350, 1528
Bst2BI CACGAG 1 cut(s) 1515
Bst2UI CCWGG 1 cut(s) 637
Bst4CI ACNGT 5 cut(s) 46, 316, 427, 1190, 1288
Bst6I CTCTTC 4 cut(s) 447, 618, 1302, 1574
BstACI GRCGYC 2 cut(s) 340, 952
BstC8I GCNNGC 2 cut(s) 438, 1332
BstDEI CTNAG 3 cut(s) 468, 1119, 1239
BstF5I GGATG 6 cut(s) 190, 301, 374, 607, 632, 1255
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 9 cut(s) 550, 937, 1053, 1075, 1153, 1196, 1206, 1408, 1474
BstMAI GTCTC 2 cut(s) 55, 146
BstMBI GATC 9 cut(s) 547, 934, 1050, 1072, 1150, 1193, 1203, 1405, 1471
BstMWI GCNNNNNNNGC 5 cut(s) 153, 254, 339, 348, 656
BstNI CCWGG 1 cut(s) 637
BstSCI CCNGG 4 cut(s) 102, 333, 377, 635
BstV1I GCAGC 3 cut(s) 246, 524, 1078
BstX2I RGATCY 3 cut(s) 934, 1050, 1203
BstXI CCANNNNNNTGG 1 cut(s) 170
BstYI RGATCY 3 cut(s) 934, 1050, 1203
BsuRI GGCC 2 cut(s) 333, 1358
BtgZI GCGATG 1 cut(s) 620
BtrI CACGTC 1 cut(s) 299
BtsCI GGATG 6 cut(s) 190, 301, 374, 607, 632, 1255
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 438, 1332
CaiI CAGNNNCTG 1 cut(s) 743
CciI TCATGA 1 cut(s) 250
CfoI GCGC 1 cut(s) 259
Cfr13I GGNCC 3 cut(s) 89, 1013, 1347
CseI GACGC 4 cut(s) 176, 348, 518, 941
Csp6I GTAC 7 cut(s) 219, 804, 847, 957, 1280, 1556, 1626
CspCI CAANNNNNGTGG 2 cut(s) 310, 345
CviAII CATG 5 cut(s) 164, 251, 812, 1010, 1621
CviQI GTAC 7 cut(s) 219, 804, 847, 957, 1280, 1556, 1626
DdeI CTNAG 3 cut(s) 468, 1119, 1239
DpnI GATC 9 cut(s) 549, 936, 1052, 1074, 1152, 1195, 1205, 1407, 1473
DpnII GATC 9 cut(s) 547, 934, 1050, 1072, 1150, 1193, 1203, 1405, 1471
DraI TTTAAA 1 cut(s) 1669
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 4 cut(s) 447, 618, 1302, 1574
EarI CTCTTC 4 cut(s) 447, 618, 1302, 1574
EciI GGCGGA 1 cut(s) 134
Ecl136II GAGCTC 2 cut(s) 248, 1334
Eco130I CCWWGG 4 cut(s) 343, 875, 1350, 1528
Eco147I AGGCCT 1 cut(s) 1358
Eco24I GRGCYC 2 cut(s) 250, 1336
Eco31I GGTCTC 1 cut(s) 55
Eco47I GGWCC 3 cut(s) 89, 1013, 1347
Eco53kI GAGCTC 2 cut(s) 248, 1334
Eco57I CTGAAG 2 cut(s) 720, 1589
EcoICRI GAGCTC 2 cut(s) 248, 1334
EcoO109I RGGNCCY 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 674
EcoRII CCWGG 1 cut(s) 635
EcoT14I CCWWGG 4 cut(s) 343, 875, 1350, 1528
EcoT38I GRGCYC 2 cut(s) 250, 1336
ErhI CCWWGG 4 cut(s) 343, 875, 1350, 1528
FaeI CATG 5 cut(s) 167, 254, 815, 1013, 1624
FalI AAGNNNNNCTT 2 cut(s) 1343, 1375
FaqI GGGAC 2 cut(s) 64, 351
FatI CATG 5 cut(s) 163, 250, 811, 1009, 1620
FbaI TGATCA 1 cut(s) 1405
Fnu4HI GCNGC 5 cut(s) 260, 352, 513, 657, 1092
FokI GGATG 6 cut(s) 197, 288, 361, 614, 619, 1262
FriOI GRGCYC 2 cut(s) 250, 1336
Fsp4HI GCNGC 5 cut(s) 260, 352, 513, 657, 1092
FspBI CTAG 2 cut(s) 243, 852
GlaI GCGC 1 cut(s) 258
GluI GCNGC 5 cut(s) 260, 352, 513, 657, 1092
GsaI CCCAGC 1 cut(s) 656
GsuI CTGGAG 2 cut(s) 45, 476
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 2 cut(s) 333, 1358
HapII CCGG 5 cut(s) 104, 200, 334, 379, 941
HgaI GACGC 4 cut(s) 176, 348, 518, 941
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 2 cut(s) 340, 952
Hin1II CATG 5 cut(s) 167, 254, 815, 1013, 1624
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HinfI GANTC 6 cut(s) 8, 536, 610, 628, 680, 1427
HpaII CCGG 5 cut(s) 104, 200, 334, 379, 941
HphI GGTGA 4 cut(s) 152, 185, 652, 902
Hpy188III TCNNGA 6 cut(s) 134, 251, 533, 1238, 1456, 1700
Hpy99I CGWCG 1 cut(s) 957
HpyCH4III ACNGT 5 cut(s) 46, 316, 427, 1190, 1288
HpyCH4IV ACGT 3 cut(s) 298, 702, 1510
HpyCH4V TGCA 2 cut(s) 686, 863
HpyF10VI GCNNNNNNNGC 5 cut(s) 153, 254, 339, 348, 656
HpyF3I CTNAG 3 cut(s) 468, 1119, 1239
HpySE526I ACGT 3 cut(s) 298, 702, 1510
Hsp92I GRCGYC 2 cut(s) 340, 952
Hsp92II CATG 5 cut(s) 167, 254, 815, 1013, 1624
HspAI GCGC 1 cut(s) 257
KpnI GGTACC 2 cut(s) 1559, 1629
Ksp22I TGATCA 1 cut(s) 1405
Kzo9I GATC 9 cut(s) 547, 934, 1050, 1072, 1150, 1193, 1203, 1405, 1471
LguI GCTCTTC 2 cut(s) 447, 1574
LmnI GCTCC 2 cut(s) 520, 1416
Lsp1109I GCAGC 3 cut(s) 246, 524, 1078
LweI GCATC 5 cut(s) 175, 202, 592, 1384, 1681
MaeI CTAG 2 cut(s) 243, 852
MaeII ACGT 3 cut(s) 298, 702, 1510
MaeIII GTNAC 1 cut(s) 1034
MalI GATC 9 cut(s) 549, 936, 1052, 1074, 1152, 1195, 1205, 1407, 1473
MboI GATC 9 cut(s) 547, 934, 1050, 1072, 1150, 1193, 1203, 1405, 1471
MfeI CAATTG 2 cut(s) 408, 989
MflI RGATCY 3 cut(s) 934, 1050, 1203
MhlI GDGCHC 2 cut(s) 250, 1336
MlyI GAGTC 1 cut(s) 604
MmeI TCCRAC 1 cut(s) 649
MseI TTAA 6 cut(s) 429, 527, 572, 897, 1257, 1668
MslI CAYNNNNRTG 2 cut(s) 794, 816
MspI CCGG 5 cut(s) 104, 200, 334, 379, 941
MspR9I CCNGG 4 cut(s) 104, 335, 379, 637
MunI CAATTG 2 cut(s) 408, 989
MvaI CCWGG 1 cut(s) 637
MwoI GCNNNNNNNGC 5 cut(s) 153, 254, 339, 348, 656
NciI CCSGG 3 cut(s) 104, 335, 379
NdeII GATC 9 cut(s) 547, 934, 1050, 1072, 1150, 1193, 1203, 1405, 1471
NlaIII CATG 5 cut(s) 167, 254, 815, 1013, 1624
NlaIV GGNNCC 7 cut(s) 90, 857, 936, 1147, 1313, 1557, 1627
OliI CACNNNNGTG 1 cut(s) 794
PagI TCATGA 1 cut(s) 250
PceI AGGCCT 1 cut(s) 1358
PciSI GCTCTTC 2 cut(s) 447, 1574
PcsI WCGNNNNNNNCGW 1 cut(s) 1072
PfeI GAWTC 5 cut(s) 8, 536, 628, 680, 1427
PkrI GCNGC 5 cut(s) 261, 353, 514, 658, 1093
PleI GAGTC 1 cut(s) 604
PpsI GAGTC 1 cut(s) 604
PpuMI RGGWCCY 1 cut(s) 89
Psp124BI GAGCTC 2 cut(s) 250, 1336
Psp1406I AACGTT 1 cut(s) 1510
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 635
PspFI CCCAGC 1 cut(s) 652
PspGI CCWGG 1 cut(s) 635
PspN4I GGNNCC 7 cut(s) 90, 857, 936, 1147, 1313, 1557, 1627
PspPI GGNCC 3 cut(s) 89, 1013, 1347
PspPPI RGGWCCY 1 cut(s) 89
PsrI GAACNNNNNNTAC 4 cut(s) 839, 871, 1272, 1304
PstNI CAGNNNCTG 1 cut(s) 743
PsuI RGATCY 3 cut(s) 934, 1050, 1203
RsaI GTAC 7 cut(s) 220, 805, 848, 958, 1281, 1557, 1627
RsaNI GTAC 7 cut(s) 219, 804, 847, 957, 1280, 1556, 1626
RseI CAYNNNNRTG 2 cut(s) 794, 816
SacI GAGCTC 2 cut(s) 250, 1336
SapI GCTCTTC 2 cut(s) 447, 1574
SaqAI TTAA 6 cut(s) 429, 527, 572, 897, 1257, 1668
SatI GCNGC 5 cut(s) 260, 352, 513, 657, 1092
Sau3AI GATC 9 cut(s) 547, 934, 1050, 1072, 1150, 1193, 1203, 1405, 1471
Sau96I GGNCC 3 cut(s) 89, 1013, 1347
SchI GAGTC 1 cut(s) 604
ScrFI CCNGG 4 cut(s) 104, 335, 379, 637
SduI GDGCHC 2 cut(s) 250, 1336
SfaNI GCATC 5 cut(s) 175, 202, 592, 1384, 1681
SinI GGWCC 3 cut(s) 89, 1013, 1347
SmiMI CAYNNNNRTG 2 cut(s) 794, 816
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SseBI AGGCCT 1 cut(s) 1358
SsiI CCGC 3 cut(s) 145, 352, 657
SspMI CTAG 2 cut(s) 243, 852
SstI GAGCTC 2 cut(s) 250, 1336
StuI AGGCCT 1 cut(s) 1358
StyD4I CCNGG 4 cut(s) 102, 333, 377, 635
StyI CCWWGG 4 cut(s) 343, 875, 1350, 1528
TaaI ACNGT 5 cut(s) 46, 316, 427, 1190, 1288
TaiI ACGT 3 cut(s) 301, 705, 1513
TaqI TCGA 4 cut(s) 678, 1192, 1342, 1418
TatI WGTACW 1 cut(s) 846
TauI GCSGC 2 cut(s) 354, 659
TfiI GAWTC 5 cut(s) 8, 536, 628, 680, 1427
Tru1I TTAA 6 cut(s) 429, 527, 572, 897, 1257, 1668
Tru9I TTAA 6 cut(s) 429, 527, 572, 897, 1257, 1668
TscAI CASTG 1 cut(s) 49
TseI GCWGC 3 cut(s) 259, 512, 1091
TspDTI ATGAA 4 cut(s) 257, 363, 1073, 1118
TspGWI ACGGA 2 cut(s) 593, 1199
TspRI CASTG 1 cut(s) 49
VpaK11BI GGWCC 3 cut(s) 89, 1013, 1347
XapI RAATTY 3 cut(s) 502, 674, 1670
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
XspI CTAG 2 cut(s) 243, 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.