FvH4_5g31282

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000147
Physical Location & Seq
Reverse (-)
22181068 .. 22184759
3692 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31282.t1

Sequence Viewer

Length: 2598 bp
ATGAGAATCATATCATGGAATTGTCAGGGTCTTGGATCACCCCTGACAATCCAGGCTCTTCCAAGATTGTGTAAAAACCAATCTCCTCAGATCCTGTTTCTAATGGAAACAAGAAAGCAAAGTGATCAAATTTCCAGCTGGAAAAGGAAATTGAAGTTCAATGATCACTTCACAGTCGATCCGGTCCGAACCGGTGGAGGCCTTGCTCTTTTGTGGTCTTCCTCTGTTTCCATTTCAATTGTCGATTTCTCTCCAAATTTTATCGACACGGTTGTAACTTTTCATTCTGAAGCTTTTGTTTGTAATATGACCTTCATGTATGGCAATCCCCATGAAAATGAAAAAAAAGCTTTCTGGCGTTTGATGTATTCCCGGTTCACTCCTCGGTCCTCTCCCTGGGTTTGTATTGGAGATTTCAACGAAATCCAATGGTCTTTTGAGAAATGGGGTGGAGCTCCACCTGAGATATGGAGAATTAAGCTTTTCCAAGATTTCATCTCAAATGCTATGCTCAGAGATCTCAACTTTCAAGGCCCTGAATACACGTGGTTTGCCATCCGAAATAGGAAAGTGTTCATCAAAGAAAGGCTTGATAAGGCAATGGCAAATATACACTGGTGCACATCTCAATCAAAAACTCAAGTGTTTCACCTGCCAAAAATTGGGTCAGATCATCGACCAATTCTAATTGACACTCTCCCTGCCGAAACAAAAGGTAAACCATTGTTTCGATATGAGAATTTCTGGAATGATCATGAAGAATGTATTCCTTTGATTAGAGGAATTTGGAGAACTGAAGGCTTGGCTAATCCTATGCGAAGATGGATTACAAATCTTGGGGAGTCCACTCTAGCTCTGAAAAAATGGAGTAGAACTGCCTTTCCTACCTCCCATGCGCAAGTAAGATCTCTAATCCAAGACCTTGAGGCCCTGTATGAATCTGAAGATCAGGAAGTCACTCCTCAACTCCAAGATATCACTGAAAACATTTCAACTCTTTGGAGGCGTGATGAAAAGATTCAGAATGATAACAGTGTGTGGATTCAAAAAGAGAATGAGATAGCTGACACTTTCCTCGATTATTTTCAAGGCATTTTCACCTCCAAAGGTCCTCAACAATGGGAAGAAGTTCTTGATTTCATCGATCCTTTGGTCTCAGAGGAGATGAATTTAAACCTGCAAGCTAACATATCCTTGGAAGAGGTTAAATGTGCAACTTTCGATCTCGGAGCTTTGAAAGCACCAGGTCCAGACGGCTTTTCTGGGACTTTCTACCAACATCACTGGGAAACAATAAAAGAAGTGATCCATATGTCTGCCATTCATCACCATAATTCATCAGAGCTGATCAAGAACCTCAATCAAACCCATATTGCTCTGATTCCAAAAGTGCACTCCCTTACCAAGGCTGTTTCTTCAGGCATCCATTGGAAGGCATGGGAGGCCCTAGGTCTCCTAAAATCAGAAGGTGGTTTAGGTTTCAGAAACTTCGAGGATTTTAACGATGCTCTGCTAGCAAAACAAGTTTGGAGACTCCACCAATTCCCAAACTCTCTGTCAGCTCAAGTCATAAAACAGATTTACCATCCCGAGTCTTCAATCTTGGAAGCAAAAAAAGGTCCCTCTCCTTCTTGGTTATGGAATAGTCTCCTAGTTGGAAAAGACCTTATTCGAGCCGGAACTCTTTGGGAAATAGGGAATGGTAAGTCAATGAACCTCTGGTCTGATCAATGGGTACCTTCTTCGCCCCCAGCTCCTATTTGTCCAGCAAGAGGTAATCTGCATGACAAAGTTGAGACTTTAATAAACTGGCAGTCGAACTCTTGGGATCTCTCATCAGTTCAAGACCATATCACCCCCTCCATTTGTTCAAAAATTCTCTCAATCCGCCTTATCAATCAAGAGATGGAAGACAAACTCATATGGCCACATACAACAAATGGAGTTTACTCAGTGAGGTCAGGTTACCACTATCTTGCTTCCAGAAAAGCTAATCAACCTGCTTCACACCCAAGCCATTCTCATTCTCCCTCTCAAAAGCTCTGGAAGTGGCTTCCCAAAATTAGAACACTTCCGAAAATCAAAATGTTCATGTGGAAAGCCATCAATAACATCCTAGCAACCAAAGAAGCCCTACACAGAAAACATATTGCTAGAAGCCCCATCTGCCCTATATGCAATCAATATCCTGAGACAATCGAACATGCTCTCTTCACTTGCCCATGGGCAGTAGCTACCTGGTTTGCGCACCCAATGGGTTATCAGATACCTTTGCAATCCTTCACAACCATATTCCGATGGCTCGAGCAACTCCATTCGGCCAATTTCCACAAGGAAGTCATAACCCATATCTCTTTCCTTCTCTGGTCAATTTGGACAAATAGATGCAAATGTATCTTCAATCACAGTGAGCCAAATCCGATGAAGGTAGCTCTTCTTGCCCACAAATCTGCTGAAGAGTTTCTACAAGTCCACAAGCCTAAGAATAAGTCCGAAAGTAGTTCAGAAGAGGATCGCTCTCCCGGTAGCTCTTCAGCGACAGAAACTTGGAACCCCCCTCCCCCTAATGCTCTCAAGATCAACTCTGATGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

866

Amino Acids

99.54

Weight (kDa)

8.37

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 4 - 225 1.4e-15 Endonuclease/Exonuclease/phosphatase family
zf-RVT PF13966 650 - 747 2.9e-15 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 660
Acc16I TGCGCA 2 cut(s) 897, 2247
Acc36I ACCTGC 3 cut(s) 660, 1185, 2008
Acc65I GGTACC 1 cut(s) 1735
AccB1I GGYRCC 1 cut(s) 1735
AccB7I CCANNNNNTGG 1 cut(s) 662
AciI CCGC 1 cut(s) 1888
AclWI GGATC 7 cut(s) 43, 85, 173, 1139, 1300, 1836, 2520
AcoI YGGCCR 2 cut(s) 1925, 2319
AcsI RAATTY 6 cut(s) 129, 256, 739, 783, 1168, 1875
AcuI CTGAAG 6 cut(s) 309, 816, 963, 1401, 2475, 2517
AcvI CACGTG 1 cut(s) 546
AfaI GTAC 1 cut(s) 1737
AfiI CCNNNNNNNGG 5 cut(s) 396, 662, 1405, 1432, 1772
AflIII ACRYGT 1 cut(s) 543
AgeI ACCGGT 1 cut(s) 191
AjnI CCWGG 4 cut(s) 51, 395, 1243, 2237
AloI GAACNNNNNNTCC 2 cut(s) 865, 897
Alw21I GWGCWC 3 cut(s) 457, 623, 1395
Alw26I GTCTC 6 cut(s) 1159, 1457, 1525, 1652, 1790, 2186
Alw44I GTGCAC 2 cut(s) 619, 1391
AlwI GGATC 7 cut(s) 43, 85, 173, 1139, 1300, 1836, 2520
AlwNI CAGNNNCTG 1 cut(s) 94
Ama87I CYCGRG 2 cut(s) 1589, 2303
AoxI GGCC 6 cut(s) 199, 532, 927, 1443, 1925, 2319
ApaLI GTGCAC 2 cut(s) 619, 1391
ApeKI GCWGC 1 cut(s) 2591
ApoI RAATTY 6 cut(s) 129, 256, 739, 783, 1168, 1875
ArsI GACNNNNNNTTYG 4 cut(s) 650, 682, 1541, 1573
AsiGI ACCGGT 1 cut(s) 191
Asp700I GAANNNNTTC 5 cut(s) 572, 765, 1017, 1128, 2460
Asp718I GGTACC 1 cut(s) 1735
AspA2I CCTAGG 1 cut(s) 1447
AspLEI GCGC 2 cut(s) 898, 2248
AspS9I GGNCC 8 cut(s) 184, 387, 533, 928, 1109, 1247, 1444, 1619
AsuC2I CCSGG 2 cut(s) 373, 2523
AsuHPI GGTGA 5 cut(s) 30, 641, 1090, 1319, 1846
AsuNHI GCTAGC 1 cut(s) 1513
AvaI CYCGRG 2 cut(s) 1589, 2303
AvaII GGWCC 5 cut(s) 184, 387, 1109, 1247, 1619
AvrII CCTAGG 1 cut(s) 1447
BaeGI GKGCMC 2 cut(s) 623, 1395
BalI TGGCCA 1 cut(s) 1927
BanI GGYRCC 1 cut(s) 1735
BanII GRGCYC 1 cut(s) 457
BarI GAAGNNNNNNTAC 4 cut(s) 811, 843, 2448, 2480
BbrPI CACGTG 1 cut(s) 546
BbsI GAAGAC 3 cut(s) 210, 1587, 1917
Bbv12I GWGCWC 3 cut(s) 457, 623, 1395
BbvI GCAGC 1 cut(s) 2578
BccI CCATC 7 cut(s) 563, 816, 1593, 1900, 2111, 2171, 2292
BceAI ACGGC 1 cut(s) 1270
BciT130I CCWGG 4 cut(s) 53, 397, 1245, 2239
BclI TGATCA 5 cut(s) 124, 163, 751, 1347, 1726
BcnI CCSGG 2 cut(s) 373, 2523
BcoDI GTCTC 6 cut(s) 1159, 1457, 1525, 1652, 1790, 2186
BfaI CTAG 6 cut(s) 851, 1448, 1514, 1652, 2117, 2154
BfuAI ACCTGC 3 cut(s) 660, 1185, 2008
BglII AGATCT 2 cut(s) 517, 905
BisI GCNGC 1 cut(s) 2592
BlnI CCTAGG 1 cut(s) 1447
BlsI GCNGC 1 cut(s) 2593
Bme1390I CCNGG 6 cut(s) 53, 373, 397, 1245, 2239, 2523
Bme18I GGWCC 5 cut(s) 184, 387, 1109, 1247, 1619
BmeT110I CYCGRG 2 cut(s) 1589, 2303
BmgT120I GGNCC 8 cut(s) 184, 387, 533, 928, 1109, 1247, 1444, 1619
BmiI GGNNCC 3 cut(s) 1621, 1737, 2552
BmrFI CCNGG 6 cut(s) 53, 373, 397, 1245, 2239, 2523
BmrI ACTGGG 1 cut(s) 1294
BmsI GCATC 4 cut(s) 1431, 1495, 2375, 2578
BmtI GCTAGC 1 cut(s) 1517
BmuI ACTGGG 1 cut(s) 1294
BpiI GAAGAC 3 cut(s) 210, 1587, 1917
BplI GAGNNNNNCTC 2 cut(s) 2501, 2533
BpuEI CTTGAG 4 cut(s) 624, 944, 1548, 2558
BpuMI CCSGG 2 cut(s) 373, 2523
Bsa29I ATCGAT 1 cut(s) 1143
BsaAI YACGTR 1 cut(s) 546
BsaI GGTCTC 2 cut(s) 1159, 1457
BsaJI CCNNGG 7 cut(s) 383, 395, 396, 1194, 1404, 1447, 2222
BsaWI WCCGGW 2 cut(s) 181, 191
Bsc4I CCNNNNNNNGG 5 cut(s) 396, 662, 1405, 1432, 1772
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 3 cut(s) 620, 1289, 1814
Bse3DI GCAATG 1 cut(s) 606
BseBI CCWGG 4 cut(s) 53, 397, 1245, 2239
BseCI ATCGAT 1 cut(s) 1143
BseDI CCNNGG 7 cut(s) 383, 395, 396, 1194, 1404, 1447, 2222
BseGI GGATG 4 cut(s) 555, 1422, 1585, 2112
BseLI CCNNNNNNNGG 5 cut(s) 396, 662, 1405, 1432, 1772
BseMI GCAATG 1 cut(s) 606
BseMII CTCAG 6 cut(s) 101, 453, 526, 1170, 1965, 2181
BseNI ACTGG 3 cut(s) 620, 1289, 1814
BseRI GAGGAG 4 cut(s) 75, 372, 951, 1175
BseSI GKGCMC 2 cut(s) 623, 1395
BseXI GCAGC 1 cut(s) 2578
BseYI CCCAGC 1 cut(s) 1750
BshFI GGCC 6 cut(s) 201, 534, 929, 1445, 1927, 2321
BshNI GGYRCC 1 cut(s) 1735
BshTI ACCGGT 1 cut(s) 191
BshVI ATCGAT 1 cut(s) 1143
BsiHKAI GWGCWC 3 cut(s) 457, 623, 1395
BsiHKCI CYCGRG 2 cut(s) 1589, 2303
BsiSI CCGG 5 cut(s) 182, 192, 373, 1677, 2523
BslFI GGGAC 2 cut(s) 1279, 1605
BslI CCNNNNNNNGG 5 cut(s) 396, 662, 1405, 1432, 1772
BsmAI GTCTC 6 cut(s) 1159, 1457, 1525, 1652, 1790, 2186
BsmFI GGGAC 2 cut(s) 1279, 1605
BsnI GGCC 6 cut(s) 201, 534, 929, 1445, 1927, 2321
Bso31I GGTCTC 2 cut(s) 1159, 1457
BsoBI CYCGRG 2 cut(s) 1589, 2303
Bsp1286I GDGCHC 3 cut(s) 457, 623, 1395
Bsp19I CCATGG 1 cut(s) 2222
BspACI CCGC 1 cut(s) 1888
BspANI GGCC 6 cut(s) 201, 534, 929, 1445, 1927, 2321
BspCNI CTCAG 6 cut(s) 100, 454, 525, 1169, 1964, 2182
BspDI ATCGAT 1 cut(s) 1143
BspHI TCATGA 1 cut(s) 754
BspLI GGNNCC 3 cut(s) 1621, 1737, 2552
BspMI ACCTGC 3 cut(s) 660, 1185, 2008
BspOI GCTAGC 1 cut(s) 1517
BspPI GGATC 7 cut(s) 43, 85, 173, 1139, 1300, 1836, 2520
BspQI GCTCTTC 3 cut(s) 63, 2439, 2536
BspT107I GGYRCC 1 cut(s) 1735
BspTNI GGTCTC 2 cut(s) 1159, 1457
BsrDI GCAATG 1 cut(s) 606
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 3 cut(s) 620, 1289, 1814
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 7 cut(s) 383, 395, 396, 1194, 1404, 1447, 2222
BssT1I CCWWGG 4 cut(s) 1194, 1404, 1447, 2222
Bst2UI CCWGG 4 cut(s) 53, 397, 1245, 2239
Bst4CI ACNGT 4 cut(s) 175, 271, 1034, 2408
Bst6I CTCTTC 7 cut(s) 63, 1194, 2216, 2439, 2451, 2502, 2536
BstBAI YACGTR 1 cut(s) 546
BstC8I GCNNGC 2 cut(s) 1182, 1515
BstDEI CTNAG 7 cut(s) 87, 462, 512, 1156, 1951, 2190, 2481
BstDSI CCRYGG 1 cut(s) 2222
BstEII GGTNACC 1 cut(s) 1964
BstENI CCTNNNNNAGG 1 cut(s) 1403
BstF5I GGATG 4 cut(s) 555, 1422, 1585, 2112
BstHHI GCGC 2 cut(s) 898, 2248
BstMAI GTCTC 6 cut(s) 1159, 1457, 1525, 1652, 1790, 2186
BstMWI GCNNNNNNNGC 6 cut(s) 1238, 1442, 1514, 2166, 2175, 2438
BstNI CCWGG 4 cut(s) 53, 397, 1245, 2239
BstNSI RCATGY 1 cut(s) 2207
BstPI GGTNACC 1 cut(s) 1964
BstSCI CCNGG 6 cut(s) 51, 371, 395, 1243, 2237, 2521
BstSLI GKGCMC 2 cut(s) 623, 1395
BstV1I GCAGC 1 cut(s) 2578
BstV2I GAAGAC 3 cut(s) 210, 1587, 1917
BstX2I RGATCY 4 cut(s) 90, 517, 905, 1828
BstYI RGATCY 4 cut(s) 90, 517, 905, 1828
Bsu15I ATCGAT 1 cut(s) 1143
BsuRI GGCC 6 cut(s) 201, 534, 929, 1445, 1927, 2321
BsuTUI ATCGAT 1 cut(s) 1143
BtgI CCRYGG 1 cut(s) 2222
BtsCI GGATG 4 cut(s) 555, 1422, 1585, 2112
BtsIMutI CAGTG 6 cut(s) 613, 978, 1039, 1282, 1959, 2413
BveI ACCTGC 3 cut(s) 660, 1185, 2008
Cac8I GCNNGC 2 cut(s) 1182, 1515
CaiI CAGNNNCTG 1 cut(s) 94
CciI TCATGA 1 cut(s) 754
CfoI GCGC 2 cut(s) 898, 2248
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 8 cut(s) 184, 387, 533, 928, 1109, 1247, 1444, 1619
ClaI ATCGAT 1 cut(s) 1143
CpoI CGGWCCG 1 cut(s) 184
CsiI ACCWGGT 2 cut(s) 1243, 2237
Csp6I GTAC 1 cut(s) 1736
CspAI ACCGGT 1 cut(s) 191
CspI CGGWCCG 1 cut(s) 184
CviQI GTAC 1 cut(s) 1736
DdeI CTNAG 7 cut(s) 87, 462, 512, 1156, 1951, 2190, 2481
DraI TTTAAA 1 cut(s) 1173
EaeI YGGCCR 2 cut(s) 1925, 2319
Eam1104I CTCTTC 7 cut(s) 63, 1194, 2216, 2439, 2451, 2502, 2536
EarI CTCTTC 7 cut(s) 63, 1194, 2216, 2439, 2451, 2502, 2536
EciI GGCGGA 1 cut(s) 1877
Ecl136II GAGCTC 1 cut(s) 455
Eco130I CCWWGG 4 cut(s) 1194, 1404, 1447, 2222
Eco147I AGGCCT 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 457
Eco31I GGTCTC 2 cut(s) 1159, 1457
Eco32I GATATC 1 cut(s) 976
Eco47I GGWCC 5 cut(s) 184, 387, 1109, 1247, 1619
Eco53kI GAGCTC 1 cut(s) 455
Eco57I CTGAAG 6 cut(s) 309, 816, 963, 1401, 2475, 2517
Eco72I CACGTG 1 cut(s) 546
Eco88I CYCGRG 2 cut(s) 1589, 2303
Eco91I GGTNACC 1 cut(s) 1964
EcoICRI GAGCTC 1 cut(s) 455
EcoNI CCTNNNNNAGG 1 cut(s) 1403
EcoO109I RGGNCCY 5 cut(s) 533, 928, 1109, 1444, 1619
EcoO65I GGTNACC 1 cut(s) 1964
EcoRII CCWGG 4 cut(s) 51, 395, 1243, 2237
EcoRV GATATC 1 cut(s) 976
EcoT14I CCWWGG 4 cut(s) 1194, 1404, 1447, 2222
EcoT38I GRGCYC 1 cut(s) 457
ErhI CCWWGG 4 cut(s) 1194, 1404, 1447, 2222
FalI AAGNNNNNCTT 4 cut(s) 573, 605, 1116, 1148
FaqI GGGAC 2 cut(s) 1279, 1605
FauNDI CATATG 2 cut(s) 1311, 1922
FbaI TGATCA 5 cut(s) 124, 163, 751, 1347, 1726
Fnu4HI GCNGC 1 cut(s) 2592
FokI GGATG 4 cut(s) 542, 1409, 1572, 2099
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 1 cut(s) 2592
FspBI CTAG 6 cut(s) 851, 1448, 1514, 1652, 2117, 2154
FspI TGCGCA 2 cut(s) 897, 2247
GlaI GCGC 2 cut(s) 897, 2247
GluI GCNGC 1 cut(s) 2592
GsaI CCCAGC 1 cut(s) 1754
HaeIII GGCC 6 cut(s) 201, 534, 929, 1445, 1927, 2321
HapII CCGG 5 cut(s) 182, 192, 373, 1677, 2523
HhaI GCGC 2 cut(s) 898, 2248
Hin6I GCGC 2 cut(s) 896, 2246
HinP1I GCGC 2 cut(s) 896, 2246
HindIII AAGCTT 3 cut(s) 291, 348, 479
HinfI GANTC 8 cut(s) 6, 842, 938, 1018, 1042, 1381, 1533, 1592
HpaII CCGG 5 cut(s) 182, 192, 373, 1677, 2523
HphI GGTGA 5 cut(s) 30, 641, 1090, 1319, 1846
Hpy166II GTNNAC 7 cut(s) 378, 621, 719, 846, 1393, 1948, 2473
Hpy8I GTNNAC 7 cut(s) 378, 621, 719, 846, 1393, 1948, 2473
HpyAV CCTTC 9 cut(s) 322, 791, 1426, 1460, 1638, 1749, 2290, 2369, 2419
HpyCH4III ACNGT 4 cut(s) 175, 271, 1034, 2408
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 8 cut(s) 621, 1180, 1214, 1393, 1783, 2178, 2275, 2388
HpyF10VI GCNNNNNNNGC 6 cut(s) 1238, 1442, 1514, 2166, 2175, 2438
HpyF3I CTNAG 7 cut(s) 87, 462, 512, 1156, 1951, 2190, 2481
HpySE526I ACGT 1 cut(s) 545
HspAI GCGC 2 cut(s) 896, 2246
KpnI GGTACC 1 cut(s) 1739
Ksp22I TGATCA 5 cut(s) 124, 163, 751, 1347, 1726
LguI GCTCTTC 3 cut(s) 63, 2439, 2536
LmnI GCTCC 4 cut(s) 452, 460, 1229, 1759
Lsp1109I GCAGC 1 cut(s) 2578
LweI GCATC 4 cut(s) 1431, 1495, 2375, 2578
MabI ACCWGGT 2 cut(s) 1243, 2237
MaeI CTAG 6 cut(s) 851, 1448, 1514, 1652, 2117, 2154
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 3 cut(s) 274, 955, 1964
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 4 cut(s) 90, 517, 905, 1828
MhlI GDGCHC 3 cut(s) 457, 623, 1395
MlsI TGGCCA 1 cut(s) 1927
MluNI TGGCCA 1 cut(s) 1927
MlyI GAGTC 3 cut(s) 851, 1527, 1601
MmeI TCCRAC 1 cut(s) 1636
Mox20I TGGCCA 1 cut(s) 1927
MroXI GAANNNNTTC 5 cut(s) 572, 765, 1017, 1128, 2460
MscI TGGCCA 1 cut(s) 1927
MseI TTAA 5 cut(s) 477, 1172, 1206, 1500, 1802
MslI CAYNNNNRTG 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 1927
MspA1I CMGCKG 1 cut(s) 138
MspI CCGG 5 cut(s) 182, 192, 373, 1677, 2523
MspR9I CCNGG 6 cut(s) 53, 373, 397, 1245, 2239, 2523
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 4 cut(s) 53, 397, 1245, 2239
MwoI GCNNNNNNNGC 6 cut(s) 1238, 1442, 1514, 2166, 2175, 2438
NciI CCSGG 2 cut(s) 373, 2523
NcoI CCATGG 1 cut(s) 2222
NdeI CATATG 2 cut(s) 1311, 1922
NheI GCTAGC 1 cut(s) 1513
NlaIV GGNNCC 3 cut(s) 1621, 1737, 2552
NmuCI GTSAC 1 cut(s) 955
NsbI TGCGCA 2 cut(s) 897, 2247
NspI RCATGY 1 cut(s) 2207
PaeR7I CTCGAG 1 cut(s) 2303
PagI TCATGA 1 cut(s) 754
PaqCI CACCTGC 1 cut(s) 660
PasI CCCWGGG 1 cut(s) 396
PceI AGGCCT 1 cut(s) 201
PciSI GCTCTTC 3 cut(s) 63, 2439, 2536
PdmI GAANNNNTTC 5 cut(s) 572, 765, 1017, 1128, 2460
PfeI GAWTC 5 cut(s) 6, 938, 1018, 1042, 1381
PflMI CCANNNNNTGG 1 cut(s) 662
PinAI ACCGGT 1 cut(s) 191
PkrI GCNGC 1 cut(s) 2593
PleI GAGTC 3 cut(s) 850, 1527, 1600
PmaCI CACGTG 1 cut(s) 546
PmlI CACGTG 1 cut(s) 546
PpsI GAGTC 3 cut(s) 850, 1527, 1600
Ppu21I YACGTR 1 cut(s) 546
PpuMI RGGWCCY 2 cut(s) 1109, 1619
Psp124BI GAGCTC 1 cut(s) 457
Psp5II RGGWCCY 2 cut(s) 1109, 1619
Psp6I CCWGG 4 cut(s) 51, 395, 1243, 2237
PspCI CACGTG 1 cut(s) 546
PspEI GGTNACC 1 cut(s) 1964
PspFI CCCAGC 1 cut(s) 1750
PspGI CCWGG 4 cut(s) 51, 395, 1243, 2237
PspN4I GGNNCC 3 cut(s) 1621, 1737, 2552
PspPI GGNCC 8 cut(s) 184, 387, 533, 928, 1109, 1247, 1444, 1619
PspPPI RGGWCCY 2 cut(s) 1109, 1619
PspXI VCTCGAGB 1 cut(s) 2303
PsrI GAACNNNNNNTAC 2 cut(s) 359, 391
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 4 cut(s) 90, 517, 905, 1828
PvuII CAGCTG 1 cut(s) 138
RsaI GTAC 1 cut(s) 1737
RsaNI GTAC 1 cut(s) 1736
RseI CAYNNNNRTG 1 cut(s) 336
Rsr2I CGGWCCG 1 cut(s) 184
RsrII CGGWCCG 1 cut(s) 184
SacI GAGCTC 1 cut(s) 457
SapI GCTCTTC 3 cut(s) 63, 2439, 2536
SaqAI TTAA 5 cut(s) 477, 1172, 1206, 1500, 1802
SatI GCNGC 1 cut(s) 2592
Sau96I GGNCC 8 cut(s) 184, 387, 533, 928, 1109, 1247, 1444, 1619
SchI GAGTC 3 cut(s) 851, 1527, 1601
ScrFI CCNGG 6 cut(s) 53, 373, 397, 1245, 2239, 2523
SduI GDGCHC 3 cut(s) 457, 623, 1395
SexAI ACCWGGT 2 cut(s) 1243, 2237
SfaNI GCATC 4 cut(s) 1431, 1495, 2375, 2578
Sfr274I CTCGAG 1 cut(s) 2303
SinI GGWCC 5 cut(s) 184, 387, 1109, 1247, 1619
SlaI CTCGAG 1 cut(s) 2303
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 5 cut(s) 639, 923, 1563, 2303, 2573
SmoI CTYRAG 5 cut(s) 639, 923, 1563, 2303, 2573
SseBI AGGCCT 1 cut(s) 201
SsiI CCGC 1 cut(s) 1888
SspMI CTAG 6 cut(s) 851, 1448, 1514, 1652, 2117, 2154
SstI GAGCTC 1 cut(s) 457
StuI AGGCCT 1 cut(s) 201
StyD4I CCNGG 6 cut(s) 51, 371, 395, 1243, 2237, 2521
StyI CCWWGG 4 cut(s) 1194, 1404, 1447, 2222
TaaI ACNGT 4 cut(s) 175, 271, 1034, 2408
TaiI ACGT 1 cut(s) 548
TaqII GACCGA 1 cut(s) 375
TfiI GAWTC 5 cut(s) 6, 938, 1018, 1042, 1381
Tru1I TTAA 5 cut(s) 477, 1172, 1206, 1500, 1802
Tru9I TTAA 5 cut(s) 477, 1172, 1206, 1500, 1802
TscAI CASTG 6 cut(s) 620, 985, 1039, 1289, 1959, 2413
TseFI GTSAC 1 cut(s) 955
TseI GCWGC 1 cut(s) 2591
Tsp45I GTSAC 1 cut(s) 955
TspRI CASTG 6 cut(s) 620, 985, 1039, 1289, 1959, 2413
Van91I CCANNNNNTGG 1 cut(s) 662
VneI GTGCAC 2 cut(s) 619, 1391
VpaK11BI GGWCC 5 cut(s) 184, 387, 1109, 1247, 1619
XagI CCTNNNNNAGG 1 cut(s) 1403
XapI RAATTY 6 cut(s) 129, 256, 739, 783, 1168, 1875
XceI RCATGY 1 cut(s) 2207
XcmI CCANNNNNNNNNTGG 1 cut(s) 465
XhoI CTCGAG 1 cut(s) 2303
XmaJI CCTAGG 1 cut(s) 1447
XmnI GAANNNNTTC 5 cut(s) 572, 765, 1017, 1128, 2460
XspI CTAG 6 cut(s) 851, 1448, 1514, 1652, 2117, 2154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.