ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Phosducin | PF02114 | 88 - 181 | 1.3e-09 | Phosducin |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 290 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 96, 537 |
| AciI | CCGC | 2 cut(s) | 131, 332 |
| AclWI | GGATC | 4 cut(s) | 239, 257, 361, 382 |
| AcoI | YGGCCR | 1 cut(s) | 171 |
| AcsI | RAATTY | 1 cut(s) | 512 |
| AdeI | CACNNNGTG | 1 cut(s) | 96 |
| AfaI | GTAC | 1 cut(s) | 500 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 96, 254, 371, 537 |
| AgsI | TTSAA | 2 cut(s) | 39, 320 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 345, 377 |
| AluBI | AGCT | 3 cut(s) | 118, 404, 558 |
| AluI | AGCT | 3 cut(s) | 118, 404, 558 |
| Alw26I | GTCTC | 1 cut(s) | 482 |
| AlwI | GGATC | 4 cut(s) | 239, 257, 361, 382 |
| Ama87I | CYCGRG | 1 cut(s) | 290 |
| AoxI | GGCC | 1 cut(s) | 171 |
| ApeKI | GCWGC | 1 cut(s) | 558 |
| ApoI | RAATTY | 1 cut(s) | 512 |
| AspS9I | GGNCC | 1 cut(s) | 232 |
| AsuHPI | GGTGA | 1 cut(s) | 439 |
| AvaI | CYCGRG | 1 cut(s) | 290 |
| AvaII | GGWCC | 1 cut(s) | 232 |
| BbsI | GAAGAC | 1 cut(s) | 246 |
| BbvCI | CCTCAGC | 1 cut(s) | 336 |
| BbvI | GCAGC | 1 cut(s) | 545 |
| BccI | CCATC | 2 cut(s) | 40, 546 |
| BcoDI | GTCTC | 1 cut(s) | 482 |
| BisI | GCNGC | 2 cut(s) | 333, 559 |
| BlsI | GCNGC | 2 cut(s) | 334, 560 |
| Bme18I | GGWCC | 1 cut(s) | 232 |
| BmeT110I | CYCGRG | 1 cut(s) | 290 |
| BmgT120I | GGNCC | 1 cut(s) | 232 |
| BmiI | GGNNCC | 2 cut(s) | 85, 363 |
| BmrI | ACTGGG | 1 cut(s) | 88 |
| BmsI | GCATC | 1 cut(s) | 459 |
| BmuI | ACTGGG | 1 cut(s) | 88 |
| BpiI | GAAGAC | 1 cut(s) | 246 |
| Bpu10I | CCTNAGC | 1 cut(s) | 336 |
| BpuEI | CTTGAG | 1 cut(s) | 384 |
| BsaBI | GATNNNNATC | 2 cut(s) | 249, 267 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 71, 101 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 96, 254, 371, 537 |
| Bse1I | ACTGG | 1 cut(s) | 94 |
| Bse8I | GATNNNNATC | 2 cut(s) | 249, 267 |
| BseGI | GGATG | 1 cut(s) | 51 |
| BseJI | GATNNNNATC | 2 cut(s) | 249, 267 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 96, 254, 371, 537 |
| BseMII | CTCAG | 1 cut(s) | 327 |
| BseNI | ACTGG | 1 cut(s) | 94 |
| BseRI | GAGGAG | 1 cut(s) | 147 |
| BseX3I | CGGCCG | 1 cut(s) | 171 |
| BseXI | GCAGC | 1 cut(s) | 545 |
| Bsh1285I | CGRYCG | 1 cut(s) | 174 |
| BshFI | GGCC | 1 cut(s) | 173 |
| BsiEI | CGRYCG | 1 cut(s) | 174 |
| BsiHKCI | CYCGRG | 1 cut(s) | 290 |
| BsiSI | CCGG | 1 cut(s) | 170 |
| BslFI | GGGAC | 2 cut(s) | 65, 556 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 96, 254, 371, 537 |
| BsmAI | GTCTC | 1 cut(s) | 482 |
| BsmFI | GGGAC | 2 cut(s) | 65, 556 |
| BsnI | GGCC | 1 cut(s) | 173 |
| BsoBI | CYCGRG | 1 cut(s) | 290 |
| Bsp143I | GATC | 7 cut(s) | 244, 250, 262, 268, 280, 353, 374 |
| BspACI | CCGC | 2 cut(s) | 131, 332 |
| BspANI | GGCC | 1 cut(s) | 173 |
| BspCNI | CTCAG | 1 cut(s) | 328 |
| BspLI | GGNNCC | 2 cut(s) | 85, 363 |
| BspPI | GGATC | 4 cut(s) | 239, 257, 361, 382 |
| BsrI | ACTGG | 1 cut(s) | 94 |
| BssMI | GATC | 7 cut(s) | 244, 250, 262, 268, 280, 353, 374 |
| Bst6I | CTCTTC | 3 cut(s) | 195, 290, 302 |
| BstDEI | CTNAG | 1 cut(s) | 336 |
| BstF5I | GGATG | 1 cut(s) | 51 |
| BstKTI | GATC | 7 cut(s) | 247, 253, 265, 271, 283, 356, 377 |
| BstMAI | GTCTC | 1 cut(s) | 482 |
| BstMBI | GATC | 7 cut(s) | 244, 250, 262, 268, 280, 353, 374 |
| BstMCI | CGRYCG | 1 cut(s) | 174 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 341, 564 |
| BstV1I | GCAGC | 1 cut(s) | 545 |
| BstV2I | GAAGAC | 1 cut(s) | 246 |
| BstZI | CGGCCG | 1 cut(s) | 171 |
| BsuRI | GGCC | 1 cut(s) | 173 |
| BtsCI | GGATG | 1 cut(s) | 51 |
| BtsI | GCAGTG | 1 cut(s) | 479 |
| BtsIMutI | CAGTG | 2 cut(s) | 101, 479 |
| Cfr13I | GGNCC | 1 cut(s) | 232 |
| Csp6I | GTAC | 1 cut(s) | 499 |
| CviJI | RGCY | 8 cut(s) | 86, 118, 154, 173, 185, 335, 404, 558 |
| CviKI_1 | RGCY | 8 cut(s) | 86, 118, 154, 173, 185, 335, 404, 558 |
| CviQI | GTAC | 1 cut(s) | 499 |
| DdeI | CTNAG | 1 cut(s) | 336 |
| DpnI | GATC | 7 cut(s) | 246, 252, 264, 270, 282, 355, 376 |
| DpnII | GATC | 7 cut(s) | 244, 250, 262, 268, 280, 353, 374 |
| DraIII | CACNNNGTG | 1 cut(s) | 96 |
| EaeI | YGGCCR | 1 cut(s) | 171 |
| EagI | CGGCCG | 1 cut(s) | 171 |
| Eam1104I | CTCTTC | 3 cut(s) | 195, 290, 302 |
| EarI | CTCTTC | 3 cut(s) | 195, 290, 302 |
| EciI | GGCGGA | 1 cut(s) | 120 |
| EclXI | CGGCCG | 1 cut(s) | 171 |
| Eco47I | GGWCC | 1 cut(s) | 232 |
| Eco52I | CGGCCG | 1 cut(s) | 171 |
| Eco88I | CYCGRG | 1 cut(s) | 290 |
| EcoO109I | RGGNCCY | 1 cut(s) | 232 |
| FaiI | YATR | 2 cut(s) | 24, 63 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 174, 206, 393, 425 |
| FaqI | GGGAC | 2 cut(s) | 65, 556 |
| Fnu4HI | GCNGC | 2 cut(s) | 333, 559 |
| FokI | GGATG | 1 cut(s) | 58 |
| Fsp4HI | GCNGC | 2 cut(s) | 333, 559 |
| GluI | GCNGC | 2 cut(s) | 333, 559 |
| HaeIII | GGCC | 1 cut(s) | 173 |
| HapII | CCGG | 1 cut(s) | 170 |
| HindIII | AAGCTT | 1 cut(s) | 116 |
| HinfI | GANTC | 1 cut(s) | 430 |
| HpaII | CCGG | 1 cut(s) | 170 |
| HphI | GGTGA | 1 cut(s) | 439 |
| Hpy188I | TCNGA | 1 cut(s) | 379 |
| Hpy188III | TCNNGA | 6 cut(s) | 17, 248, 266, 272, 372, 479 |
| Hpy99I | CGWCG | 3 cut(s) | 179, 263, 281 |
| HpyAV | CCTTC | 2 cut(s) | 172, 437 |
| HpyCH4V | TGCA | 3 cut(s) | 344, 452, 472 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 341, 564 |
| HpyF3I | CTNAG | 1 cut(s) | 336 |
| Kzo9I | GATC | 7 cut(s) | 244, 250, 262, 268, 280, 353, 374 |
| LmnI | GCTCC | 3 cut(s) | 83, 409, 555 |
| Lsp1109I | GCAGC | 1 cut(s) | 545 |
| LweI | GCATC | 1 cut(s) | 459 |
| MalI | GATC | 7 cut(s) | 246, 252, 264, 270, 282, 355, 376 |
| MboI | GATC | 7 cut(s) | 244, 250, 262, 268, 280, 353, 374 |
| MboII | GAAGA | 7 cut(s) | 27, 119, 182, 251, 277, 319, 494 |
| MluCI | AATT | 4 cut(s) | 320, 366, 447, 512 |
| MseI | TTAA | 1 cut(s) | 150 |
| MspI | CCGG | 1 cut(s) | 170 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 341, 564 |
| NdeII | GATC | 7 cut(s) | 244, 250, 262, 268, 280, 353, 374 |
| NlaIV | GGNNCC | 2 cut(s) | 85, 363 |
| PaeR7I | CTCGAG | 1 cut(s) | 290 |
| PfeI | GAWTC | 1 cut(s) | 430 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 96, 537 |
| PkrI | GCNGC | 2 cut(s) | 334, 560 |
| PpuMI | RGGWCCY | 1 cut(s) | 232 |
| Psp5II | RGGWCCY | 1 cut(s) | 232 |
| PspN4I | GGNNCC | 2 cut(s) | 85, 363 |
| PspPI | GGNCC | 1 cut(s) | 232 |
| PspPPI | RGGWCCY | 1 cut(s) | 232 |
| PspXI | VCTCGAGB | 1 cut(s) | 290 |
| RsaI | GTAC | 1 cut(s) | 500 |
| RsaNI | GTAC | 1 cut(s) | 499 |
| SaqAI | TTAA | 1 cut(s) | 150 |
| SatI | GCNGC | 2 cut(s) | 333, 559 |
| Sau3AI | GATC | 7 cut(s) | 244, 250, 262, 268, 280, 353, 374 |
| Sau96I | GGNCC | 1 cut(s) | 232 |
| SetI | ASST | 7 cut(s) | 120, 237, 314, 342, 396, 406, 560 |
| SfaNI | GCATC | 1 cut(s) | 459 |
| Sfr274I | CTCGAG | 1 cut(s) | 290 |
| SinI | GGWCC | 1 cut(s) | 232 |
| SlaI | CTCGAG | 1 cut(s) | 290 |
| SmlI | CTYRAG | 2 cut(s) | 290, 399 |
| SmoI | CTYRAG | 2 cut(s) | 290, 399 |
| Sse9I | AATT | 4 cut(s) | 320, 366, 447, 512 |
| SsiI | CCGC | 2 cut(s) | 131, 332 |
| TaqI | TCGA | 4 cut(s) | 18, 237, 291, 480 |
| TasI | AATT | 4 cut(s) | 320, 366, 447, 512 |
| TauI | GCSGC | 1 cut(s) | 335 |
| TfiI | GAWTC | 1 cut(s) | 430 |
| Tru1I | TTAA | 1 cut(s) | 150 |
| Tru9I | TTAA | 1 cut(s) | 150 |
| TscAI | CASTG | 2 cut(s) | 101, 479 |
| TseI | GCWGC | 1 cut(s) | 558 |
| TspDTI | ATGAA | 1 cut(s) | 195 |
| TspGWI | ACGGA | 1 cut(s) | 96 |
| TspRI | CASTG | 2 cut(s) | 101, 479 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 96, 537 |
| VpaK11BI | GGWCC | 1 cut(s) | 232 |
| XapI | RAATTY | 1 cut(s) | 512 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 414 |
| XhoI | CTCGAG | 1 cut(s) | 290 |