Rw4G003490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000147
Physical Location & Seq
Forward (+)
7001077 .. 7008701
7625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G003490.1

Sequence Viewer

Length: 672 bp
ATGCTCCCCCACCATCAAAATGAACCCAAGAGTATTCCTAACCAGCAGCAAACTTCCGCTCGAATTCCTGACGACTTATCTGATGAGACTTTATTCATCTTTCCTTCTATCCGAGGGCCTGCTCAGGGCTTTGTACGTGCCCCTGCTAGAAATGGTTCCCCTCTTCATTTTGCTCAGACTTCACAGAGGACTCATGTTGTTGAATTTCGGTCCTTCTCTATGCGTGGTCACACGTTTTCTCGTTCTTCTTTTCGTCGTTTCGATGTCTCTTTTGTGGATGTTGCAAGGAATCTAGATGAGACTGTTAATCCAAAAGATACTCCTATTTCCTTTTCTCTCCCTATATATGTCCCAGAATCTAATCCTGACTTGCATCCTCATATAGTTCCCATTCCTGACCCGGTTCCGGTGGTTGCTACTTCCTCACCCATTATTTCGGTTGCTGTTCCTGATGATAATTTGGCTGCGAATGAGGATCTCGACCCTGATTTAGAGAATGAAGAACTTGAGGAAGATGTTGATGTTGTGGAGGGTGGTCATAAGCGATTTCGCAGTGGAGGACTCTTGATCGCTGTCAGCACCTACGGCATTTTAGGCGGAGGCGGCTGCAGCGGCGAGGACCCTAGAGAGGTCGGGGCTGGGGTGAGAGAGAAGATAAAAGAGTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

24.39

Weight (kDa)

4.96

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 59
AciI CCGC 4 cut(s) 57, 597, 603, 612
AclWI GGATC 1 cut(s) 483
AcsI RAATTY 2 cut(s) 63, 203
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 3 cut(s) 125, 406, 628
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 1 cut(s) 203
Alw26I GTCTC 3 cut(s) 80, 271, 293
AlwI GGATC 1 cut(s) 483
AoxI GGCC 1 cut(s) 116
ApeKI GCWGC 4 cut(s) 46, 464, 606, 609
ApoI RAATTY 2 cut(s) 63, 203
Asp700I GAANNNNTTC 1 cut(s) 154
AspS9I GGNCC 3 cut(s) 116, 210, 619
AsuC2I CCSGG 1 cut(s) 401
AsuHPI GGTGA 2 cut(s) 417, 655
AvaII GGWCC 2 cut(s) 210, 619
BaeGI GKGCMC 1 cut(s) 142
BbvI GCAGC 4 cut(s) 58, 451, 593, 621
BccI CCATC 1 cut(s) 21
BceAI ACGGC 1 cut(s) 601
BcnI CCSGG 1 cut(s) 401
BcoDI GTCTC 3 cut(s) 80, 271, 293
BfaI CTAG 3 cut(s) 147, 293, 624
BfmI CTRYAG 1 cut(s) 607
BisI GCNGC 6 cut(s) 47, 465, 604, 607, 610, 613
BlsI GCNGC 6 cut(s) 48, 466, 605, 608, 611, 614
Bme1390I CCNGG 1 cut(s) 401
Bme18I GGWCC 2 cut(s) 210, 619
BmgT120I GGNCC 3 cut(s) 116, 210, 619
BmiI GGNNCC 3 cut(s) 157, 405, 621
BmrFI CCNGG 1 cut(s) 401
BmsI GCATC 1 cut(s) 382
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 527
BpuMI CCSGG 1 cut(s) 401
BsaAI YACGTR 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 112
BsaWI WCCGGW 1 cut(s) 406
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 406, 628
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 2 cut(s) 283, 373
BseLI CCNNNNNNNGG 3 cut(s) 125, 406, 628
BseMII CTCAG 2 cut(s) 137, 188
BseSI GKGCMC 1 cut(s) 142
BseXI GCAGC 4 cut(s) 58, 451, 593, 621
BseYI CCCAGC 1 cut(s) 638
BshFI GGCC 1 cut(s) 118
BsiSI CCGG 2 cut(s) 401, 407
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 3 cut(s) 125, 406, 628
BsmAI GTCTC 3 cut(s) 80, 271, 293
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 2 cut(s) 475, 567
BspACI CCGC 4 cut(s) 57, 597, 603, 612
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 2 cut(s) 136, 187
BspLI GGNNCC 3 cut(s) 157, 405, 621
BspMAI CTGCAG 1 cut(s) 611
BspPI GGATC 1 cut(s) 483
BsrBI CCGCTC 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 2 cut(s) 475, 567
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 123, 174
BstF5I GGATG 2 cut(s) 283, 373
BstKTI GATC 2 cut(s) 478, 570
BstMAI GTCTC 3 cut(s) 80, 271, 293
BstMBI GATC 2 cut(s) 475, 567
BstMWI GCNNNNNNNGC 5 cut(s) 585, 594, 603, 609, 612
BstSCI CCNGG 1 cut(s) 399
BstSFI CTRYAG 1 cut(s) 607
BstSLI GKGCMC 1 cut(s) 142
BstV1I GCAGC 4 cut(s) 58, 451, 593, 621
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BsuRI GGCC 1 cut(s) 118
BtsCI GGATG 2 cut(s) 283, 373
BtsI GCAGTG 1 cut(s) 559
BtsIMutI CAGTG 1 cut(s) 559
Cac8I GCNNGC 1 cut(s) 120
Cfr13I GGNCC 3 cut(s) 116, 210, 619
Csp6I GTAC 1 cut(s) 134
CviAII CATG 1 cut(s) 194
CviJI RGCY 5 cut(s) 118, 129, 464, 606, 638
CviKI_1 RGCY 5 cut(s) 118, 129, 464, 606, 638
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 2 cut(s) 123, 174
DpnI GATC 2 cut(s) 477, 569
DpnII GATC 2 cut(s) 475, 567
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
EciI GGCGGA 1 cut(s) 612
Eco47I GGWCC 2 cut(s) 210, 619
EcoO109I RGGNCCY 2 cut(s) 116, 619
EcoRI GAATTC 1 cut(s) 63
FaeI CATG 1 cut(s) 197
FaiI YATR 8 cut(s) 195, 221, 344, 346, 348, 381, 383, 540
FaqI GGGAC 1 cut(s) 335
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 6 cut(s) 47, 465, 604, 607, 610, 613
FokI GGATG 2 cut(s) 290, 360
Fsp4HI GCNGC 6 cut(s) 47, 465, 604, 607, 610, 613
FspBI CTAG 3 cut(s) 147, 293, 624
GluI GCNGC 6 cut(s) 47, 465, 604, 607, 610, 613
GsaI CCCAGC 1 cut(s) 642
HaeIII GGCC 1 cut(s) 118
HapII CCGG 2 cut(s) 401, 407
Hin1II CATG 1 cut(s) 197
HinfI GANTC 4 cut(s) 190, 289, 356, 561
HpaII CCGG 2 cut(s) 401, 407
HphI GGTGA 2 cut(s) 417, 655
Hpy188I TCNGA 3 cut(s) 82, 113, 177
Hpy188III TCNNGA 7 cut(s) 68, 293, 365, 395, 449, 479, 565
Hpy99I CGWCG 1 cut(s) 258
HpyAV CCTTC 2 cut(s) 114, 223
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 2 cut(s) 136, 233
HpyCH4V TGCA 3 cut(s) 284, 373, 609
HpyF10VI GCNNNNNNNGC 5 cut(s) 585, 594, 603, 609, 612
HpyF3I CTNAG 2 cut(s) 123, 174
HpySE526I ACGT 2 cut(s) 136, 233
Hsp92II CATG 1 cut(s) 197
Kzo9I GATC 2 cut(s) 475, 567
LmnI GCTCC 1 cut(s) 9
Lsp1109I GCAGC 4 cut(s) 58, 451, 593, 621
LweI GCATC 1 cut(s) 382
MaeI CTAG 3 cut(s) 147, 293, 624
MaeII ACGT 2 cut(s) 136, 233
MaeIII GTNAC 1 cut(s) 227
MalI GATC 2 cut(s) 477, 569
MbiI CCGCTC 1 cut(s) 59
MboI GATC 2 cut(s) 475, 567
MboII GAAGA 5 cut(s) 155, 237, 512, 524, 664
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 3 cut(s) 63, 203, 457
MlyI GAGTC 2 cut(s) 184, 555
MroXI GAANNNNTTC 1 cut(s) 154
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 612
MspI CCGG 2 cut(s) 401, 407
MspR9I CCNGG 1 cut(s) 401
MwoI GCNNNNNNNGC 5 cut(s) 585, 594, 603, 609, 612
NciI CCSGG 1 cut(s) 401
NdeII GATC 2 cut(s) 475, 567
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 3 cut(s) 157, 405, 621
NmuCI GTSAC 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 154
PfeI GAWTC 2 cut(s) 289, 356
PkrI GCNGC 6 cut(s) 48, 466, 605, 608, 611, 614
PleI GAGTC 2 cut(s) 184, 555
PpsI GAGTC 2 cut(s) 184, 555
Ppu21I YACGTR 1 cut(s) 137
PpuMI RGGWCCY 1 cut(s) 619
Psp5II RGGWCCY 1 cut(s) 619
PspFI CCCAGC 1 cut(s) 638
PspN4I GGNNCC 3 cut(s) 157, 405, 621
PspPI GGNCC 3 cut(s) 116, 210, 619
PspPPI RGGWCCY 1 cut(s) 619
PstI CTGCAG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 475
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 6 cut(s) 47, 465, 604, 607, 610, 613
Sau3AI GATC 2 cut(s) 475, 567
Sau96I GGNCC 3 cut(s) 116, 210, 619
SchI GAGTC 2 cut(s) 184, 555
ScrFI CCNGG 1 cut(s) 401
SduI GDGCHC 1 cut(s) 142
SetI ASST 4 cut(s) 139, 236, 584, 633
SfaNI GCATC 1 cut(s) 382
SfcI CTRYAG 1 cut(s) 607
SinI GGWCC 2 cut(s) 210, 619
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 3 cut(s) 63, 203, 457
SsiI CCGC 4 cut(s) 57, 597, 603, 612
SspMI CTAG 3 cut(s) 147, 293, 624
StyD4I CCNGG 1 cut(s) 399
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 2 cut(s) 139, 236
TaqI TCGA 3 cut(s) 61, 261, 480
TaqII GACCGA 1 cut(s) 198
TasI AATT 3 cut(s) 63, 203, 457
TauI GCSGC 2 cut(s) 606, 615
TfiI GAWTC 2 cut(s) 289, 356
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 559
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 4 cut(s) 46, 464, 606, 609
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 4 cut(s) 36, 85, 155, 513
TspRI CASTG 1 cut(s) 559
VpaK11BI GGWCC 2 cut(s) 210, 619
XapI RAATTY 2 cut(s) 63, 203
XbaI TCTAGA 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 154
XspI CTAG 3 cut(s) 147, 293, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.