Rh6CG231700

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000147
Physical Location & Seq
Forward (+)
39056117 .. 39098130
42014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG231700.1

Sequence Viewer

Length: 906 bp
ATGGCTTCTTTACTCGGGTATTTTATCACATGCTTGCTCACAAATCCGGGCATGAGGTTGATTTCTTGGAACTGTCAGGGGCTTGGATCCTCCCTGACAAGGAAAGCTTTGAGGAAGATTTGCAGAAGACAGAAACCAGATTTTCTGTTTCTAATGGAGACAAGACAACAGGAGAAGACTATCAAAGACTGGAAGAAACACTTGAGATTCACAGATTATCATGTTGTAAACCCCCTCCGCACTGGAGGGGGTTTAGCTCTGTTTTGGGGTGAAAATGTCCAGGTTCATATTCTCGATTCCACTCCAAACTATATAGATACTACTGTTTCTTTTATTTCTGATGCTTTTGTGTGTAAGATAACATGGTTTTACGGCAACCCTCATGAGAATGAGAAAAAAGCCTTTTGGAGTTTGATGTCCCGACGGTTTGTTAGCGAGGTTCAACCTTGGTTAGTGATCGGAGATTTCAATGAAATTCTTGATACCTCAGAGAAATGGGGAGGTGACATTTCTGCCCAGTGGAGATTGAATTTGTTTCGGGACTTTTTAAGTGGTAGGCAACTCAGAGATCTTCATTATAATGGTCCTGAAATTACTTGGTTTGCAGTGCGACATGATCGTGTTTTTATAAAGGAACGGTTAGATAGAGCTCTAGGCTGGCCTGGTGCTCCTCACAGTCTCGAACCCAACTCTTCCATCTACCAAAAATTGGTTCTGATCATAGGCCAATTCTTTTGGATACTCACCCTATTGCTGTCAAAACCCAGTCCCCTTTCCGCTTTGAACAATATTGGACTACTCATGAAGATTATGCTGGTATTATCCATGATTCTTGGCATCAGAGATCACATGACCAACCTATGTCAGTTTGGAATTCTAATCTTTCTCGCTGTGGAAAAGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

301

Amino Acids

34.89

Weight (kDa)

9.4

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 21 - 216 4.1e-12 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 579, 629
AccB7I CCANNNNNTGG 1 cut(s) 709
AciI CCGC 2 cut(s) 238, 777
AclWI GGATC 2 cut(s) 81, 94
AcsI RAATTY 3 cut(s) 474, 529, 873
AfiI CCNNNNNNNGG 2 cut(s) 99, 709
AgsI TTSAA 4 cut(s) 443, 469, 529, 784
AjnI CCWGG 2 cut(s) 279, 661
AjuI GAANNNNNNNTTGG 2 cut(s) 696, 728
AluBI AGCT 4 cut(s) 107, 257, 650, 901
AluI AGCT 4 cut(s) 107, 257, 650, 901
Alw21I GWGCWC 2 cut(s) 652, 670
Alw26I GTCTC 2 cut(s) 152, 683
AlwI GGATC 2 cut(s) 81, 94
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 2 cut(s) 659, 724
ApoI RAATTY 3 cut(s) 474, 529, 873
AspS9I GGNCC 1 cut(s) 584
AsuC2I CCSGG 1 cut(s) 48
AsuHPI GGTGA 3 cut(s) 281, 515, 736
AvaI CYCGRG 1 cut(s) 14
AvaII GGWCC 1 cut(s) 584
BaeI ACNNNNGTAYC 2 cut(s) 309, 342
BamHI GGATCC 1 cut(s) 86
BanII GRGCYC 1 cut(s) 652
BbsI GAAGAC 2 cut(s) 133, 182
Bbv12I GWGCWC 2 cut(s) 652, 670
BccI CCATC 1 cut(s) 704
BceAI ACGGC 1 cut(s) 388
BciT130I CCWGG 2 cut(s) 281, 663
BciVI GTATCC 1 cut(s) 732
BclI TGATCA 1 cut(s) 717
BcnI CCSGG 1 cut(s) 48
BcoDI GTCTC 2 cut(s) 152, 683
BfaI CTAG 1 cut(s) 653
BfuI GTATCC 1 cut(s) 732
BglII AGATCT 1 cut(s) 568
Bme1390I CCNGG 3 cut(s) 48, 281, 663
Bme18I GGWCC 1 cut(s) 584
BmeT110I CYCGRG 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 3 cut(s) 48, 281, 663
BmrI ACTGGG 2 cut(s) 511, 759
BmsI GCATC 2 cut(s) 331, 846
BmuI ACTGGG 2 cut(s) 511, 759
BpiI GAAGAC 2 cut(s) 133, 182
BpmI CTGGAG 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 223
BpuMI CCSGG 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 446
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 709
Bse1I ACTGG 4 cut(s) 194, 247, 517, 765
BseBI CCWGG 2 cut(s) 281, 663
BseDI CCNNGG 1 cut(s) 446
BseLI CCNNNNNNNGG 2 cut(s) 99, 709
BseMII CTCAG 2 cut(s) 501, 577
BseNI ACTGG 4 cut(s) 194, 247, 517, 765
BseRI GAGGAG 1 cut(s) 660
BshFI GGCC 2 cut(s) 661, 726
BsiHKAI GWGCWC 2 cut(s) 652, 670
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 3 cut(s) 403, 554, 753
BslI CCNNNNNNNGG 2 cut(s) 99, 709
BsmAI GTCTC 2 cut(s) 152, 683
BsmFI GGGAC 3 cut(s) 403, 554, 753
BsnI GGCC 2 cut(s) 661, 726
BsoBI CYCGRG 1 cut(s) 14
Bsp1286I GDGCHC 2 cut(s) 652, 670
Bsp143I GATC 6 cut(s) 86, 456, 568, 616, 717, 844
BspACI CCGC 2 cut(s) 238, 777
BspANI GGCC 2 cut(s) 661, 726
BspCNI CTCAG 2 cut(s) 500, 576
BspHI TCATGA 2 cut(s) 382, 801
BspLI GGNNCC 1 cut(s) 88
BspPI GGATC 2 cut(s) 81, 94
BsrI ACTGG 4 cut(s) 194, 247, 517, 765
BssECI CCNNGG 1 cut(s) 446
BssMI GATC 6 cut(s) 86, 456, 568, 616, 717, 844
BssT1I CCWWGG 1 cut(s) 446
Bst2UI CCWGG 2 cut(s) 281, 663
Bst4CI ACNGT 5 cut(s) 74, 325, 426, 639, 677
Bst6I CTCTTC 1 cut(s) 697
BstC8I GCNNGC 2 cut(s) 35, 659
BstDEI CTNAG 2 cut(s) 487, 563
BstKTI GATC 6 cut(s) 89, 459, 571, 619, 720, 847
BstMAI GTCTC 2 cut(s) 152, 683
BstMBI GATC 6 cut(s) 86, 456, 568, 616, 717, 844
BstNI CCWGG 2 cut(s) 281, 663
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 3 cut(s) 46, 279, 661
BstV2I GAAGAC 2 cut(s) 133, 182
BstX2I RGATCY 2 cut(s) 86, 568
BstYI RGATCY 2 cut(s) 86, 568
BsuI GTATCC 1 cut(s) 732
BsuRI GGCC 2 cut(s) 661, 726
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 3 cut(s) 240, 524, 612
Cac8I GCNNGC 2 cut(s) 35, 659
CciI TCATGA 2 cut(s) 382, 801
Cfr13I GGNCC 1 cut(s) 584
CviAII CATG 9 cut(s) 30, 52, 221, 363, 383, 614, 802, 826, 850
DdeI CTNAG 2 cut(s) 487, 563
DpnI GATC 6 cut(s) 88, 458, 570, 618, 719, 846
DpnII GATC 6 cut(s) 86, 456, 568, 616, 717, 844
Eam1104I CTCTTC 1 cut(s) 697
EarI CTCTTC 1 cut(s) 697
Ecl136II GAGCTC 1 cut(s) 650
Eco130I CCWWGG 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 652
Eco47I GGWCC 1 cut(s) 584
Eco53kI GAGCTC 1 cut(s) 650
Eco88I CYCGRG 1 cut(s) 14
EcoICRI GAGCTC 1 cut(s) 650
EcoRI GAATTC 1 cut(s) 873
EcoRII CCWGG 2 cut(s) 279, 661
EcoT14I CCWWGG 1 cut(s) 446
EcoT38I GRGCYC 1 cut(s) 652
ErhI CCWWGG 1 cut(s) 446
FaeI CATG 9 cut(s) 33, 55, 224, 366, 386, 617, 805, 829, 853
FalI AAGNNNNNCTT 4 cut(s) 91, 123, 185, 217
FaqI GGGAC 3 cut(s) 403, 554, 753
FatI CATG 9 cut(s) 29, 51, 220, 362, 382, 613, 801, 825, 849
FbaI TGATCA 1 cut(s) 717
FriOI GRGCYC 1 cut(s) 652
FspBI CTAG 1 cut(s) 653
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 2 cut(s) 661, 726
HapII CCGG 1 cut(s) 47
Hin1II CATG 9 cut(s) 33, 55, 224, 366, 386, 617, 805, 829, 853
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 3 cut(s) 207, 296, 829
HpaII CCGG 1 cut(s) 47
HphI GGTGA 3 cut(s) 281, 515, 736
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 6 cut(s) 340, 461, 490, 566, 717, 842
Hpy188III TCNNGA 8 cut(s) 293, 383, 420, 479, 539, 587, 680, 802
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 1 cut(s) 426
HpyCH4III ACNGT 5 cut(s) 74, 325, 426, 639, 677
HpyCH4V TGCA 2 cut(s) 123, 605
HpyF3I CTNAG 2 cut(s) 487, 563
Hsp92II CATG 9 cut(s) 33, 55, 224, 366, 386, 617, 805, 829, 853
Ksp22I TGATCA 1 cut(s) 717
Kzo9I GATC 6 cut(s) 86, 456, 568, 616, 717, 844
LmnI GCTCC 1 cut(s) 673
LweI GCATC 2 cut(s) 331, 846
MaeI CTAG 1 cut(s) 653
MaeIII GTNAC 1 cut(s) 503
MalI GATC 6 cut(s) 88, 458, 570, 618, 719, 846
MboI GATC 6 cut(s) 86, 456, 568, 616, 717, 844
MboII GAAGA 7 cut(s) 127, 138, 187, 205, 563, 684, 817
MflI RGATCY 2 cut(s) 86, 568
MhlI GDGCHC 2 cut(s) 652, 670
MluCI AATT 6 cut(s) 474, 529, 591, 707, 728, 873
MseI TTAA 1 cut(s) 548
MslI CAYNNNNRTG 3 cut(s) 387, 579, 618
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 3 cut(s) 48, 281, 663
MvaI CCWGG 2 cut(s) 281, 663
NciI CCSGG 1 cut(s) 48
NdeII GATC 6 cut(s) 86, 456, 568, 616, 717, 844
NlaIII CATG 9 cut(s) 33, 55, 224, 366, 386, 617, 805, 829, 853
NlaIV GGNNCC 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 503
NspI RCATGY 1 cut(s) 33
PagI TCATGA 2 cut(s) 382, 801
PfeI GAWTC 3 cut(s) 207, 296, 829
PflMI CCANNNNNTGG 1 cut(s) 709
PsiI TTATAA 2 cut(s) 579, 629
Psp124BI GAGCTC 1 cut(s) 652
Psp6I CCWGG 2 cut(s) 279, 661
PspGI CCWGG 2 cut(s) 279, 661
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 584
PsuI RGATCY 2 cut(s) 86, 568
RseI CAYNNNNRTG 3 cut(s) 387, 579, 618
SacI GAGCTC 1 cut(s) 652
SaqAI TTAA 1 cut(s) 548
Sau3AI GATC 6 cut(s) 86, 456, 568, 616, 717, 844
Sau96I GGNCC 1 cut(s) 584
ScrFI CCNGG 3 cut(s) 48, 281, 663
SduI GDGCHC 2 cut(s) 652, 670
SfaNI GCATC 2 cut(s) 331, 846
SinI GGWCC 1 cut(s) 584
SmiMI CAYNNNNRTG 3 cut(s) 387, 579, 618
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 6 cut(s) 474, 529, 591, 707, 728, 873
SsiI CCGC 2 cut(s) 238, 777
SspI AATATT 1 cut(s) 790
SspMI CTAG 1 cut(s) 653
SstI GAGCTC 1 cut(s) 652
StyD4I CCNGG 3 cut(s) 46, 279, 661
StyI CCWWGG 1 cut(s) 446
TaaI ACNGT 5 cut(s) 74, 325, 426, 639, 677
TaqI TCGA 2 cut(s) 294, 681
TasI AATT 6 cut(s) 474, 529, 591, 707, 728, 873
TfiI GAWTC 3 cut(s) 207, 296, 829
Tru1I TTAA 1 cut(s) 548
Tru9I TTAA 1 cut(s) 548
TscAI CASTG 3 cut(s) 247, 524, 612
TseFI GTSAC 1 cut(s) 503
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 4 cut(s) 275, 486, 563, 818
TspRI CASTG 3 cut(s) 247, 524, 612
Van91I CCANNNNNTGG 1 cut(s) 709
VpaK11BI GGWCC 1 cut(s) 584
XapI RAATTY 3 cut(s) 474, 529, 873
XceI RCATGY 1 cut(s) 33
XspI CTAG 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.