Rmu_sc0005733.1_g000004

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005733.1
OG0000147
Physical Location & Seq
Reverse (-)
8712 .. 10968
2257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005733.1_g000004.1.cds

Sequence Viewer

Length: 708 bp
ctggaagttaaagtgaatgttgatgatgttgtggaggtgggttcgaaggaggaagagaagtggaggaagttgagggagcaggaagttaaagtgaatgttgatgatgttgtggaggtgggttcgaaggaggaagagaagtggaggaggttgagggagcaggaagtgaagatggagagagctgggtatggaggatttaacccacctccagggttgtggcggctggccgaatacagctgcacggagtcaatgaattgtgtttcttggaactatcaaggattggggaagaccttgacagttcagactctcagggagattacacactcccattgccctgatcttgtttttatttctgaaacacatcaattggaggttatggatttctctaagtactttattgatacttggattactcttcctagtaccttgactatggttcgggtctcttggttgtatggtcctccctatgctacggagaaggcaaatttttgggatagttggatgaatcaaaggcgaggagatgatttcccttggcttgtaattggggatctaaatgagatttgcagtcaacaagagagggaaaggggtactccctggacccctaatcgtggtcggtttctacagtctttcattaactcaaattgtctgctggatattggtgatgaacaacaatatcaaagcaggcattgtgaaccacaagaggtccgataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos Exo_endo_phos_2

Protein Analysis

235

Amino Acids

27.66

Weight (kDa)

4.98

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 217
AclWI GGATC 1 cut(s) 552
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 1 cut(s) 481
AfaI GTAC 3 cut(s) 389, 421, 586
AfiI CCNNNNNNNGG 2 cut(s) 206, 605
AjnI CCWGG 2 cut(s) 205, 590
AluBI AGCT 2 cut(s) 179, 234
AluI AGCT 2 cut(s) 179, 234
Alw26I GTCTC 1 cut(s) 445
AlwI GGATC 1 cut(s) 552
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 1 cut(s) 234
ApoI RAATTY 1 cut(s) 481
AspS9I GGNCC 3 cut(s) 455, 594, 700
AsuHPI GGTGA 1 cut(s) 668
AsuII TTCGAA 2 cut(s) 44, 122
AvaII GGWCC 3 cut(s) 455, 594, 700
BbsI GAAGAC 1 cut(s) 290
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 163
BciT130I CCWGG 2 cut(s) 207, 592
BcoDI GTCTC 1 cut(s) 445
BfaI CTAG 1 cut(s) 417
BfmI CTRYAG 1 cut(s) 617
BisI GCNGC 2 cut(s) 218, 235
BlsI GCNGC 2 cut(s) 219, 236
BmcAI AGTACT 1 cut(s) 389
Bme1390I CCNGG 2 cut(s) 207, 592
Bme18I GGWCC 3 cut(s) 455, 594, 700
BmgT120I GGNCC 3 cut(s) 455, 594, 700
BmiI GGNNCC 1 cut(s) 596
BmrFI CCNGG 2 cut(s) 207, 592
BpiI GAAGAC 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 189
Bpu14I TTCGAA 2 cut(s) 44, 122
BsaI GGTCTC 1 cut(s) 445
BsaJI CCNNGG 3 cut(s) 206, 527, 590
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 605
Bse3DI GCAATG 1 cut(s) 325
BseBI CCWGG 2 cut(s) 207, 592
BseDI CCNNGG 3 cut(s) 206, 527, 590
BseGI GGATG 1 cut(s) 504
BseLI CCNNNNNNNGG 2 cut(s) 206, 605
BseMI GCAATG 1 cut(s) 325
BseMII CTCAG 1 cut(s) 319
BseRI GAGGAG 2 cut(s) 157, 528
BseXI GCAGC 1 cut(s) 221
BseYI CCCAGC 1 cut(s) 179
BsgI GTGCAG 1 cut(s) 220
BshFI GGCC 1 cut(s) 224
BslI CCNNNNNNNGG 2 cut(s) 206, 605
BsmAI GTCTC 1 cut(s) 445
BsnI GGCC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 445
Bsp119I TTCGAA 2 cut(s) 44, 122
Bsp143I GATC 2 cut(s) 334, 544
BspACI CCGC 1 cut(s) 217
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 596
BspPI GGATC 1 cut(s) 552
BspT104I TTCGAA 2 cut(s) 44, 122
BspTNI GGTCTC 1 cut(s) 445
BsrDI GCAATG 1 cut(s) 325
BssECI CCNNGG 3 cut(s) 206, 527, 590
BssMI GATC 2 cut(s) 334, 544
BssT1I CCWWGG 1 cut(s) 527
Bst2UI CCWGG 2 cut(s) 207, 592
Bst4CI ACNGT 2 cut(s) 295, 621
Bst6I CTCTTC 3 cut(s) 48, 126, 417
BstBI TTCGAA 2 cut(s) 44, 122
BstC8I GCNNGC 2 cut(s) 222, 680
BstDEI CTNAG 2 cut(s) 305, 384
BstF5I GGATG 1 cut(s) 504
BstKTI GATC 2 cut(s) 337, 547
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 2 cut(s) 334, 544
BstNI CCWGG 2 cut(s) 207, 592
BstSCI CCNGG 2 cut(s) 205, 590
BstSFI CTRYAG 1 cut(s) 617
BstV1I GCAGC 1 cut(s) 221
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 544
BstXI CCANNNNNNTGG 1 cut(s) 213
BstYI RGATCY 1 cut(s) 544
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 504
Cac8I GCNNGC 2 cut(s) 222, 680
Cfr13I GGNCC 3 cut(s) 455, 594, 700
Csp6I GTAC 3 cut(s) 388, 420, 585
CviJI RGCY 5 cut(s) 179, 220, 224, 234, 532
CviKI_1 RGCY 5 cut(s) 179, 220, 224, 234, 532
CviQI GTAC 3 cut(s) 388, 420, 585
DdeI CTNAG 2 cut(s) 305, 384
DpnI GATC 2 cut(s) 336, 546
DpnII GATC 2 cut(s) 334, 544
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 3 cut(s) 48, 126, 417
EarI CTCTTC 3 cut(s) 48, 126, 417
Eco130I CCWWGG 1 cut(s) 527
Eco31I GGTCTC 1 cut(s) 445
Eco47I GGWCC 3 cut(s) 455, 594, 700
EcoRII CCWGG 2 cut(s) 205, 590
EcoT14I CCWWGG 1 cut(s) 527
ErhI CCWWGG 1 cut(s) 527
FaiI YATR 5 cut(s) 186, 374, 431, 453, 465
Fnu4HI GCNGC 2 cut(s) 218, 235
FokI GGATG 1 cut(s) 511
Fsp4HI GCNGC 2 cut(s) 218, 235
FspBI CTAG 1 cut(s) 417
GluI GCNGC 2 cut(s) 218, 235
GsaI CCCAGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 1 cut(s) 224
HincII GTYRAC 1 cut(s) 566
HindII GTYRAC 1 cut(s) 566
HinfI GANTC 3 cut(s) 242, 301, 502
HphI GGTGA 1 cut(s) 668
Hpy166II GTNNAC 2 cut(s) 566, 689
Hpy188I TCNGA 3 cut(s) 300, 352, 704
Hpy8I GTNNAC 2 cut(s) 566, 689
HpyAV CCTTC 3 cut(s) 40, 118, 469
HpyCH4III ACNGT 2 cut(s) 295, 621
HpyCH4V TGCA 2 cut(s) 237, 561
HpyF3I CTNAG 2 cut(s) 305, 384
Kzo9I GATC 2 cut(s) 334, 544
LmnI GCTCC 2 cut(s) 76, 154
Lsp1109I GCAGC 1 cut(s) 221
MaeI CTAG 1 cut(s) 417
MalI GATC 2 cut(s) 336, 546
MboI GATC 2 cut(s) 334, 544
MboII GAAGA 5 cut(s) 65, 143, 178, 295, 404
MfeI CAATTG 1 cut(s) 362
MflI RGATCY 1 cut(s) 544
MluCI AATT 5 cut(s) 250, 362, 481, 537, 637
MlyI GAGTC 2 cut(s) 251, 295
MmeI TCCRAC 1 cut(s) 476
MseI TTAA 4 cut(s) 9, 87, 195, 630
MspA1I CMGCKG 1 cut(s) 234
MspR9I CCNGG 2 cut(s) 207, 592
MunI CAATTG 1 cut(s) 362
MvaI CCWGG 2 cut(s) 207, 592
NdeII GATC 2 cut(s) 334, 544
NlaIV GGNNCC 1 cut(s) 596
NspV TTCGAA 2 cut(s) 44, 122
PfeI GAWTC 1 cut(s) 502
PkrI GCNGC 2 cut(s) 219, 236
PleI GAGTC 2 cut(s) 250, 295
PpsI GAGTC 2 cut(s) 250, 295
Psp6I CCWGG 2 cut(s) 205, 590
PspFI CCCAGC 1 cut(s) 179
PspGI CCWGG 2 cut(s) 205, 590
PspN4I GGNNCC 1 cut(s) 596
PspPI GGNCC 3 cut(s) 455, 594, 700
PsuI RGATCY 1 cut(s) 544
PvuII CAGCTG 1 cut(s) 234
RsaI GTAC 3 cut(s) 389, 421, 586
RsaNI GTAC 3 cut(s) 388, 420, 585
SaqAI TTAA 4 cut(s) 9, 87, 195, 630
SatI GCNGC 2 cut(s) 218, 235
Sau3AI GATC 2 cut(s) 334, 544
Sau96I GGNCC 3 cut(s) 455, 594, 700
ScaI AGTACT 1 cut(s) 389
SchI GAGTC 2 cut(s) 251, 295
ScrFI CCNGG 2 cut(s) 207, 592
SfcI CTRYAG 1 cut(s) 617
SfuI TTCGAA 2 cut(s) 44, 122
SinI GGWCC 3 cut(s) 455, 594, 700
Sse9I AATT 5 cut(s) 250, 362, 481, 537, 637
SsiI CCGC 1 cut(s) 217
SspMI CTAG 1 cut(s) 417
StyD4I CCNGG 2 cut(s) 205, 590
StyI CCWWGG 1 cut(s) 527
TaaI ACNGT 2 cut(s) 295, 621
TaqI TCGA 2 cut(s) 44, 122
TasI AATT 5 cut(s) 250, 362, 481, 537, 637
TatI WGTACW 1 cut(s) 387
TauI GCSGC 1 cut(s) 220
TfiI GAWTC 1 cut(s) 502
Tru1I TTAA 4 cut(s) 9, 87, 195, 630
Tru9I TTAA 4 cut(s) 9, 87, 195, 630
TseI GCWGC 1 cut(s) 234
TspDTI ATGAA 4 cut(s) 263, 515, 616, 675
TspGWI ACGGA 2 cut(s) 254, 485
VpaK11BI GGWCC 3 cut(s) 455, 594, 700
XapI RAATTY 1 cut(s) 481
XspI CTAG 1 cut(s) 417
ZrmI AGTACT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.