Rw5G039690

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000147
Physical Location & Seq
Reverse (-)
70052384 .. 70053823
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G039690.1

Sequence Viewer

Length: 375 bp
ATGAGGTTGCTTAGCTGGAATAGCCGGGGTCGTTCCTGGCCAGGCTTTCTAGCGCAGGCGGAAGAGCTGTATTGGGCCCAACGGGCAAAAGCCAGTTGGCTTTCTCTGGGAGATAGGAATACCAGATTTTTTCAGACCCAAGCAAACCTCAAAAAGAGAAAAAACAAGATTTCTGGTATTAAGAATAATTTGGGTTTGTGGCTAGACAGACATGAGGACATCAGTAAACTTTTTATCCAAGATTTCCAAAATAGATTTAAAAGGAAGTTTGGGCTGCTGTCAAGGCTATTGGTGGCCTTAAGGCTCCAGGGCCAATGGAATTCATGCAGTTTTCTACCAAAAACATTGGAACGTGGTCAAGGACAAAATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8 Pkinase RVT_1 zf-RVT

Protein Analysis

124

Amino Acids

14.64

Weight (kDa)

11.37

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 2 cut(s) 319, 367
AflII CTTAAG 1 cut(s) 298
AjnI CCWGG 3 cut(s) 35, 40, 306
AluBI AGCT 2 cut(s) 15, 67
AluI AGCT 2 cut(s) 15, 67
AoxI GGCC 4 cut(s) 38, 75, 294, 310
ApaI GGGCCC 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 274
ApoI RAATTY 2 cut(s) 319, 367
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 3 cut(s) 75, 76, 310
AsuC2I CCSGG 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 79
BalI TGGCCA 1 cut(s) 40
BanII GRGCYC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 261
BciT130I CCWGG 3 cut(s) 37, 42, 308
BcnI CCSGG 1 cut(s) 26
BfaI CTAG 2 cut(s) 50, 203
BfrI CTTAAG 1 cut(s) 298
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 1 cut(s) 275
BlpI GCTNAGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 276
Bme1390I CCNGG 4 cut(s) 26, 37, 42, 308
BmgT120I GGNCC 3 cut(s) 75, 76, 310
BmiI GGNNCC 2 cut(s) 77, 305
BmrFI CCNGG 4 cut(s) 26, 37, 42, 308
BpmI CTGGAG 1 cut(s) 290
Bpu1102I GCTNAGC 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 25, 307
Bse1I ACTGG 1 cut(s) 93
BseBI CCWGG 3 cut(s) 37, 42, 308
BseDI CCNNGG 2 cut(s) 25, 307
BseNI ACTGG 1 cut(s) 93
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 261
BshFI GGCC 4 cut(s) 40, 77, 296, 312
BsiSI CCGG 1 cut(s) 25
BsnI GGCC 4 cut(s) 40, 77, 296, 312
Bsp120I GGGCCC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 79
Bsp1720I GCTNAGC 1 cut(s) 11
BspACI CCGC 1 cut(s) 59
BspANI GGCC 4 cut(s) 40, 77, 296, 312
BspLI GGNNCC 2 cut(s) 77, 305
BspQI GCTCTTC 1 cut(s) 57
BspTI CTTAAG 1 cut(s) 298
BsrI ACTGG 1 cut(s) 93
BssECI CCNNGG 2 cut(s) 25, 307
Bst2UI CCWGG 3 cut(s) 37, 42, 308
Bst6I CTCTTC 1 cut(s) 57
BstAFI CTTAAG 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 11
BstHHI GCGC 1 cut(s) 55
BstMWI GCNNNNNNNGC 3 cut(s) 21, 83, 283
BstNI CCWGG 3 cut(s) 37, 42, 308
BstSCI CCNGG 4 cut(s) 24, 35, 40, 306
BstSLI GKGCMC 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 261
BsuRI GGCC 4 cut(s) 40, 77, 296, 312
Cac8I GCNNGC 1 cut(s) 57
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 3 cut(s) 75, 76, 310
CviAII CATG 2 cut(s) 212, 324
DdeI CTNAG 1 cut(s) 11
DraI TTTAAA 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 319
EcoRII CCWGG 3 cut(s) 35, 40, 306
EcoT38I GRGCYC 1 cut(s) 79
FaeI CATG 2 cut(s) 215, 327
FaiI YATR 2 cut(s) 213, 325
FatI CATG 2 cut(s) 211, 323
Fnu4HI GCNGC 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 275
FspBI CTAG 2 cut(s) 50, 203
GlaI GCGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 275
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 4 cut(s) 40, 77, 296, 312
HapII CCGG 1 cut(s) 25
HhaI GCGC 1 cut(s) 55
Hin1II CATG 2 cut(s) 215, 327
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 1 cut(s) 135
Hpy8I GTNNAC 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 1 cut(s) 327
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 83, 283
HpyF3I CTNAG 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 2 cut(s) 215, 327
HspAI GCGC 1 cut(s) 53
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 309
Lsp1109I GCAGC 1 cut(s) 261
MaeI CTAG 2 cut(s) 50, 203
MaeII ACGT 1 cut(s) 352
MboII GAAGA 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 79
MlsI TGGCCA 1 cut(s) 40
MluCI AATT 3 cut(s) 187, 319, 367
MluNI TGGCCA 1 cut(s) 40
MnlI CCTC 2 cut(s) 158, 208
Mox20I TGGCCA 1 cut(s) 40
MscI TGGCCA 1 cut(s) 40
MseI TTAA 3 cut(s) 180, 258, 299
Msp20I TGGCCA 1 cut(s) 40
MspCI CTTAAG 1 cut(s) 298
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 4 cut(s) 26, 37, 42, 308
MvaI CCWGG 3 cut(s) 37, 42, 308
MwoI GCNNNNNNNGC 3 cut(s) 21, 83, 283
NciI CCSGG 1 cut(s) 26
NlaIII CATG 2 cut(s) 215, 327
NlaIV GGNNCC 2 cut(s) 77, 305
PciSI GCTCTTC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 276
Psp6I CCWGG 3 cut(s) 35, 40, 306
PspGI CCWGG 3 cut(s) 35, 40, 306
PspN4I GGNNCC 2 cut(s) 77, 305
PspOMI GGGCCC 1 cut(s) 75
PspPI GGNCC 3 cut(s) 75, 76, 310
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 3 cut(s) 180, 258, 299
SatI GCNGC 1 cut(s) 275
Sau96I GGNCC 3 cut(s) 75, 76, 310
ScrFI CCNGG 4 cut(s) 26, 37, 42, 308
SduI GDGCHC 1 cut(s) 79
SetI ASST 5 cut(s) 8, 17, 69, 150, 355
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 3 cut(s) 187, 319, 367
SsiI CCGC 1 cut(s) 59
SspMI CTAG 2 cut(s) 50, 203
StyD4I CCNGG 4 cut(s) 24, 35, 40, 306
TaiI ACGT 1 cut(s) 355
TasI AATT 3 cut(s) 187, 319, 367
Tru1I TTAA 3 cut(s) 180, 258, 299
Tru9I TTAA 3 cut(s) 180, 258, 299
TseI GCWGC 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 312
Vha464I CTTAAG 1 cut(s) 298
XapI RAATTY 2 cut(s) 319, 367
XspI CTAG 2 cut(s) 50, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.