Rw2G047020

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000147
Physical Location & Seq
Forward (+)
74444427 .. 74447530
3104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G047020.1

Sequence Viewer

Length: 495 bp
ATGAGCATCTTGTGCTGGAATTGTCGAGGCTGTTCACGACAGGGCTTTCTTTCTCAACCTACTTTTTTCACAACTCTTATGGTGTTTGATGTCTTATGTTTAGTAGATACTATGATAGATGAGGATACATCAAAGAACTTGGTTACTAAGTTGCCTTTTTGTAACTATTTTTGTGTTCCTCCGGTTGGGCATTCCGGTGGCCTGTTACTTTTATGGAACTCTAATTGTAGTATTTCCATTTTAAGCTCTCATCCTAAGTTTATTCATTGCAAGTTTCAGGATGTGTGTTCGACTACTCCCTGGCTGGTCACTTTTCTTTACATGTTTCCGCATAAACACCAACAGCAGGATCTTTGGAATAAACTTGTTAATCTGCAAGTCCATTCTCAAGAACCTTGGTTTATTATGGGTGGTTTTAATTGCATTTTACATCTAAAAGAGAAACGTGGCGGCTCAAATTTTGTTGACCGTTATATCATTCAGTTTAGACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

164

Amino Acids

19.01

Weight (kDa)

8.35

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 6 - 146 7.3e-07 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 329, 450
AclWI GGATC 1 cut(s) 357
AcsI RAATTY 1 cut(s) 457
AfiI CCNNNNNNNGG 2 cut(s) 185, 346
AflIII ACRYGT 1 cut(s) 321
AjnI CCWGG 1 cut(s) 299
AluBI AGCT 1 cut(s) 246
AluI AGCT 1 cut(s) 246
AlwI GGATC 1 cut(s) 357
AoxI GGCC 1 cut(s) 199
ApoI RAATTY 1 cut(s) 457
BciT130I CCWGG 1 cut(s) 301
BciVI GTATCC 1 cut(s) 118
BfuI GTATCC 1 cut(s) 118
BisI GCNGC 1 cut(s) 451
BlsI GCNGC 1 cut(s) 452
Bme1390I CCNGG 1 cut(s) 301
BmrFI CCNGG 1 cut(s) 301
BmsI GCATC 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 372
BsaJI CCNNGG 2 cut(s) 299, 395
BsaWI WCCGGW 2 cut(s) 181, 194
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 346
Bse3DI GCAATG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 301
BseDI CCNNGG 2 cut(s) 299, 395
BseGI GGATG 2 cut(s) 250, 286
BseLI CCNNNNNNNGG 2 cut(s) 185, 346
BseMI GCAATG 1 cut(s) 265
BshFI GGCC 1 cut(s) 201
BsiSI CCGG 2 cut(s) 182, 195
BslI CCNNNNNNNGG 2 cut(s) 185, 346
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 1 cut(s) 201
Bsp143I GATC 1 cut(s) 349
BspACI CCGC 2 cut(s) 329, 450
BspANI GGCC 1 cut(s) 201
BspPI GGATC 1 cut(s) 357
BsrDI GCAATG 1 cut(s) 265
BssECI CCNNGG 2 cut(s) 299, 395
BssMI GATC 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 395
Bst2UI CCWGG 1 cut(s) 301
Bst4CI ACNGT 1 cut(s) 470
BstAPI GCANNNNNTGC 1 cut(s) 12
BstDEI CTNAG 3 cut(s) 147, 255, 492
BstF5I GGATG 2 cut(s) 250, 286
BstKTI GATC 1 cut(s) 352
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstNI CCWGG 1 cut(s) 301
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuI GTATCC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 201
BtsCI GGATG 2 cut(s) 250, 286
CviAII CATG 1 cut(s) 322
CviJI RGCY 6 cut(s) 30, 45, 201, 246, 304, 453
CviKI_1 RGCY 6 cut(s) 30, 45, 201, 246, 304, 453
DdeI CTNAG 3 cut(s) 147, 255, 492
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 395
EcoRII CCWGG 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 1 cut(s) 325
FaiI YATR 8 cut(s) 80, 97, 113, 214, 323, 333, 407, 474
FatI CATG 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 451
FokI GGATG 2 cut(s) 237, 293
Fsp4HI GCNGC 1 cut(s) 451
GluI GCNGC 1 cut(s) 451
HaeIII GGCC 1 cut(s) 201
HapII CCGG 2 cut(s) 182, 195
Hin1II CATG 1 cut(s) 325
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HpaII CCGG 2 cut(s) 182, 195
Hpy166II GTNNAC 2 cut(s) 35, 466
Hpy188III TCNNGA 3 cut(s) 36, 278, 389
Hpy8I GTNNAC 2 cut(s) 35, 466
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4IV ACGT 1 cut(s) 445
HpyCH4V TGCA 3 cut(s) 270, 376, 423
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 3 cut(s) 147, 255, 492
HpySE526I ACGT 1 cut(s) 445
Hsp92II CATG 1 cut(s) 325
Kzo9I GATC 1 cut(s) 349
LpnPI CCDG 9 cut(s) 26, 195, 208, 215, 263, 286, 290, 313, 332
LweI GCATC 1 cut(s) 15
MaeII ACGT 1 cut(s) 445
MaeIII GTNAC 4 cut(s) 142, 161, 204, 307
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MflI RGATCY 1 cut(s) 349
MluCI AATT 4 cut(s) 19, 223, 418, 457
MnlI CCTC 3 cut(s) 20, 115, 189
MseI TTAA 3 cut(s) 242, 369, 417
MslI CAYNNNNRTG 1 cut(s) 195
MspI CCGG 2 cut(s) 182, 195
MspR9I CCNGG 1 cut(s) 301
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 1 cut(s) 301
MwoI GCNNNNNNNGC 1 cut(s) 12
NdeII GATC 1 cut(s) 349
NlaIII CATG 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 307
NspI RCATGY 1 cut(s) 325
PciI ACATGT 1 cut(s) 321
PctI GAATGC 1 cut(s) 190
PkrI GCNGC 1 cut(s) 452
PscI ACATGT 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 299
PspGI CCWGG 1 cut(s) 299
PsuI RGATCY 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 195
SaqAI TTAA 3 cut(s) 242, 369, 417
SatI GCNGC 1 cut(s) 451
Sau3AI GATC 1 cut(s) 349
ScrFI CCNGG 1 cut(s) 301
SetI ASST 5 cut(s) 61, 248, 397, 448, 493
SfaNI GCATC 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 387
SmoI CTYRAG 1 cut(s) 387
Sse9I AATT 4 cut(s) 19, 223, 418, 457
SsiI CCGC 2 cut(s) 329, 450
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 1 cut(s) 470
TaiI ACGT 1 cut(s) 448
TaqI TCGA 2 cut(s) 25, 290
TasI AATT 4 cut(s) 19, 223, 418, 457
TauI GCSGC 1 cut(s) 453
Tru1I TTAA 3 cut(s) 242, 369, 417
Tru9I TTAA 3 cut(s) 242, 369, 417
TseFI GTSAC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 1 cut(s) 254
XapI RAATTY 1 cut(s) 457
XceI RCATGY 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.