ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 88, 114 |
| AcsI | RAATTY | 3 cut(s) | 204, 213, 266 |
| AfaI | GTAC | 2 cut(s) | 107, 479 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 315, 316, 317, 333, 334 |
| AgsI | TTSAA | 5 cut(s) | 153, 185, 211, 218, 272 |
| AjnI | CCWGG | 2 cut(s) | 122, 314 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 20, 52 |
| AleI | CACNNNNGTG | 1 cut(s) | 74 |
| AluBI | AGCT | 2 cut(s) | 176, 373 |
| AluI | AGCT | 2 cut(s) | 176, 373 |
| AlwI | GGATC | 2 cut(s) | 88, 114 |
| Ama87I | CYCGRG | 1 cut(s) | 342 |
| AoxI | GGCC | 5 cut(s) | 24, 30, 324, 378, 435 |
| ApoI | RAATTY | 3 cut(s) | 204, 213, 266 |
| AspA2I | CCTAGG | 1 cut(s) | 457 |
| AspS9I | GGNCC | 5 cut(s) | 31, 325, 379, 436, 443 |
| AsuHPI | GGTGA | 2 cut(s) | 139, 380 |
| AvaI | CYCGRG | 1 cut(s) | 342 |
| AvaII | GGWCC | 1 cut(s) | 443 |
| AvrII | CCTAGG | 1 cut(s) | 457 |
| BanII | GRGCYC | 1 cut(s) | 430 |
| BccI | CCATC | 1 cut(s) | 177 |
| BciT130I | CCWGG | 2 cut(s) | 124, 316 |
| BclI | TGATCA | 1 cut(s) | 415 |
| BfaI | CTAG | 3 cut(s) | 173, 303, 458 |
| BfmI | CTRYAG | 1 cut(s) | 431 |
| BglII | AGATCT | 2 cut(s) | 7, 63 |
| BlnI | CCTAGG | 1 cut(s) | 457 |
| BmcAI | AGTACT | 2 cut(s) | 107, 479 |
| Bme1390I | CCNGG | 2 cut(s) | 124, 316 |
| Bme18I | GGWCC | 1 cut(s) | 443 |
| BmeT110I | CYCGRG | 1 cut(s) | 342 |
| BmgT120I | GGNCC | 5 cut(s) | 31, 325, 379, 436, 443 |
| BmiI | GGNNCC | 3 cut(s) | 33, 381, 455 |
| BmrFI | CCNGG | 2 cut(s) | 124, 316 |
| BmrI | ACTGGG | 1 cut(s) | 342 |
| BmsI | GCATC | 2 cut(s) | 121, 220 |
| BmuI | ACTGGG | 1 cut(s) | 342 |
| BpmI | CTGGAG | 1 cut(s) | 502 |
| BpuEI | CTTGAG | 1 cut(s) | 127 |
| BsaJI | CCNNGG | 5 cut(s) | 27, 123, 315, 439, 457 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 315, 316, 317, 333, 334 |
| Bse1I | ACTGG | 3 cut(s) | 113, 337, 485 |
| BseBI | CCWGG | 2 cut(s) | 124, 316 |
| BseDI | CCNNGG | 5 cut(s) | 27, 123, 315, 439, 457 |
| BseGI | GGATG | 1 cut(s) | 412 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 315, 316, 317, 333, 334 |
| BseNI | ACTGG | 3 cut(s) | 113, 337, 485 |
| BshFI | GGCC | 5 cut(s) | 26, 32, 326, 380, 437 |
| BsiHKCI | CYCGRG | 1 cut(s) | 342 |
| BslFI | GGGAC | 1 cut(s) | 333 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 315, 316, 317, 333, 334 |
| BsmFI | GGGAC | 1 cut(s) | 333 |
| BsnI | GGCC | 5 cut(s) | 26, 32, 326, 380, 437 |
| BsoBI | CYCGRG | 1 cut(s) | 342 |
| Bsp1286I | GDGCHC | 1 cut(s) | 430 |
| Bsp143I | GATC | 5 cut(s) | 7, 63, 80, 119, 415 |
| BspANI | GGCC | 5 cut(s) | 26, 32, 326, 380, 437 |
| BspLI | GGNNCC | 3 cut(s) | 33, 381, 455 |
| BspPI | GGATC | 2 cut(s) | 88, 114 |
| BsrI | ACTGG | 3 cut(s) | 113, 337, 485 |
| BssECI | CCNNGG | 5 cut(s) | 27, 123, 315, 439, 457 |
| BssMI | GATC | 5 cut(s) | 7, 63, 80, 119, 415 |
| BssT1I | CCWWGG | 3 cut(s) | 27, 439, 457 |
| Bst2UI | CCWGG | 2 cut(s) | 124, 316 |
| Bst6I | CTCTTC | 1 cut(s) | 93 |
| BstDEI | CTNAG | 1 cut(s) | 48 |
| BstF5I | GGATG | 1 cut(s) | 412 |
| BstKTI | GATC | 5 cut(s) | 10, 66, 83, 122, 418 |
| BstMBI | GATC | 5 cut(s) | 7, 63, 80, 119, 415 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 434 |
| BstNI | CCWGG | 2 cut(s) | 124, 316 |
| BstSCI | CCNGG | 2 cut(s) | 122, 314 |
| BstSFI | CTRYAG | 1 cut(s) | 431 |
| BstX2I | RGATCY | 4 cut(s) | 7, 63, 80, 119 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 76 |
| BstYI | RGATCY | 4 cut(s) | 7, 63, 80, 119 |
| BsuRI | GGCC | 5 cut(s) | 26, 32, 326, 380, 437 |
| BtsCI | GGATG | 1 cut(s) | 412 |
| Cfr13I | GGNCC | 5 cut(s) | 31, 325, 379, 436, 443 |
| Csp6I | GTAC | 2 cut(s) | 106, 478 |
| CviAII | CATG | 1 cut(s) | 361 |
| CviJI | RGCY | 8 cut(s) | 26, 32, 176, 326, 373, 380, 428, 437 |
| CviKI_1 | RGCY | 8 cut(s) | 26, 32, 176, 326, 373, 380, 428, 437 |
| CviQI | GTAC | 2 cut(s) | 106, 478 |
| DdeI | CTNAG | 1 cut(s) | 48 |
| DpnI | GATC | 5 cut(s) | 9, 65, 82, 121, 417 |
| DpnII | GATC | 5 cut(s) | 7, 63, 80, 119, 415 |
| Eam1104I | CTCTTC | 1 cut(s) | 93 |
| EarI | CTCTTC | 1 cut(s) | 93 |
| Eco130I | CCWWGG | 3 cut(s) | 27, 439, 457 |
| Eco24I | GRGCYC | 1 cut(s) | 430 |
| Eco47I | GGWCC | 1 cut(s) | 443 |
| Eco88I | CYCGRG | 1 cut(s) | 342 |
| EcoO109I | RGGNCCY | 3 cut(s) | 31, 325, 436 |
| EcoRII | CCWGG | 2 cut(s) | 122, 314 |
| EcoT14I | CCWWGG | 3 cut(s) | 27, 439, 457 |
| EcoT38I | GRGCYC | 1 cut(s) | 430 |
| ErhI | CCWWGG | 3 cut(s) | 27, 439, 457 |
| FaeI | CATG | 1 cut(s) | 364 |
| FaiI | YATR | 7 cut(s) | 88, 284, 294, 362, 448, 450, 474 |
| FaqI | GGGAC | 1 cut(s) | 333 |
| FatI | CATG | 1 cut(s) | 360 |
| FauNDI | CATATG | 1 cut(s) | 448 |
| FbaI | TGATCA | 1 cut(s) | 415 |
| FokI | GGATG | 1 cut(s) | 419 |
| FriOI | GRGCYC | 1 cut(s) | 430 |
| FspBI | CTAG | 3 cut(s) | 173, 303, 458 |
| GsuI | CTGGAG | 1 cut(s) | 502 |
| HaeIII | GGCC | 5 cut(s) | 26, 32, 326, 380, 437 |
| Hin1II | CATG | 1 cut(s) | 364 |
| HinfI | GANTC | 3 cut(s) | 149, 162, 250 |
| HphI | GGTGA | 2 cut(s) | 139, 380 |
| Hpy188I | TCNGA | 1 cut(s) | 117 |
| Hpy188III | TCNNGA | 2 cut(s) | 11, 342 |
| HpyAV | CCTTC | 1 cut(s) | 191 |
| HpyCH4V | TGCA | 1 cut(s) | 261 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 434 |
| HpyF3I | CTNAG | 1 cut(s) | 48 |
| Hsp92II | CATG | 1 cut(s) | 364 |
| Ksp22I | TGATCA | 1 cut(s) | 415 |
| Kzo9I | GATC | 5 cut(s) | 7, 63, 80, 119, 415 |
| LweI | GCATC | 2 cut(s) | 121, 220 |
| MaeI | CTAG | 3 cut(s) | 173, 303, 458 |
| MalI | GATC | 5 cut(s) | 9, 65, 82, 121, 417 |
| MboI | GATC | 5 cut(s) | 7, 63, 80, 119, 415 |
| MboII | GAAGA | 6 cut(s) | 17, 26, 110, 157, 298, 407 |
| MfeI | CAATTG | 1 cut(s) | 56 |
| MflI | RGATCY | 4 cut(s) | 7, 63, 80, 119 |
| MhlI | GDGCHC | 1 cut(s) | 430 |
| MluCI | AATT | 5 cut(s) | 17, 56, 204, 213, 266 |
| MmeI | TCCRAC | 1 cut(s) | 223 |
| MnlI | CCTC | 2 cut(s) | 189, 477 |
| MseI | TTAA | 3 cut(s) | 92, 137, 402 |
| MslI | CAYNNNNRTG | 1 cut(s) | 74 |
| MspR9I | CCNGG | 2 cut(s) | 124, 316 |
| MunI | CAATTG | 1 cut(s) | 56 |
| MvaI | CCWGG | 2 cut(s) | 124, 316 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 434 |
| NdeI | CATATG | 1 cut(s) | 448 |
| NdeII | GATC | 5 cut(s) | 7, 63, 80, 119, 415 |
| NlaIII | CATG | 1 cut(s) | 364 |
| NlaIV | GGNNCC | 3 cut(s) | 33, 381, 455 |
| OliI | CACNNNNGTG | 1 cut(s) | 74 |
| PaeR7I | CTCGAG | 1 cut(s) | 342 |
| PfeI | GAWTC | 3 cut(s) | 149, 162, 250 |
| Psp6I | CCWGG | 2 cut(s) | 122, 314 |
| PspGI | CCWGG | 2 cut(s) | 122, 314 |
| PspN4I | GGNNCC | 3 cut(s) | 33, 381, 455 |
| PspPI | GGNCC | 5 cut(s) | 31, 325, 379, 436, 443 |
| PsuI | RGATCY | 4 cut(s) | 7, 63, 80, 119 |
| RsaI | GTAC | 2 cut(s) | 107, 479 |
| RsaNI | GTAC | 2 cut(s) | 106, 478 |
| RseI | CAYNNNNRTG | 1 cut(s) | 74 |
| SaqAI | TTAA | 3 cut(s) | 92, 137, 402 |
| Sau3AI | GATC | 5 cut(s) | 7, 63, 80, 119, 415 |
| Sau96I | GGNCC | 5 cut(s) | 31, 325, 379, 436, 443 |
| ScaI | AGTACT | 2 cut(s) | 107, 479 |
| ScrFI | CCNGG | 2 cut(s) | 124, 316 |
| SduI | GDGCHC | 1 cut(s) | 430 |
| SetI | ASST | 3 cut(s) | 178, 375, 501 |
| SfaNI | GCATC | 2 cut(s) | 121, 220 |
| SfcI | CTRYAG | 1 cut(s) | 431 |
| Sfr274I | CTCGAG | 1 cut(s) | 342 |
| SinI | GGWCC | 1 cut(s) | 443 |
| SlaI | CTCGAG | 1 cut(s) | 342 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 74 |
| SmlI | CTYRAG | 2 cut(s) | 142, 342 |
| SmoI | CTYRAG | 2 cut(s) | 142, 342 |
| Sse9I | AATT | 5 cut(s) | 17, 56, 204, 213, 266 |
| SspMI | CTAG | 3 cut(s) | 173, 303, 458 |
| StyD4I | CCNGG | 2 cut(s) | 122, 314 |
| StyI | CCWWGG | 3 cut(s) | 27, 439, 457 |
| TaqI | TCGA | 1 cut(s) | 343 |
| TasI | AATT | 5 cut(s) | 17, 56, 204, 213, 266 |
| TatI | WGTACW | 2 cut(s) | 105, 477 |
| TfiI | GAWTC | 3 cut(s) | 149, 162, 250 |
| Tru1I | TTAA | 3 cut(s) | 92, 137, 402 |
| Tru9I | TTAA | 3 cut(s) | 92, 137, 402 |
| TspDTI | ATGAA | 2 cut(s) | 299, 377 |
| VpaK11BI | GGWCC | 1 cut(s) | 443 |
| XapI | RAATTY | 3 cut(s) | 204, 213, 266 |
| XhoI | CTCGAG | 1 cut(s) | 342 |
| XmaJI | CCTAGG | 1 cut(s) | 457 |
| XspI | CTAG | 3 cut(s) | 173, 303, 458 |
| ZrmI | AGTACT | 2 cut(s) | 107, 479 |