pycom02g19900

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000147
Physical Location & Seq
Forward (+)
18015582 .. 18016527
946 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g19900.2

Sequence Viewer

Length: 906 bp
ATGGGGCGAGGTAGCAGGATCCAGGATCTTCTTTCCCAGTTGGATTTGCTCCAGCGGGACTGGGGACCAAACTATGATGAGATAAGGGAGATTTCTAGGCGGATTGATGAGCTAAGACTCCAAGAGGAGAGTTATTGGTGCCAGCGATCGAGGGTAAAATGGTTGAGGGAGGGGGATGCTAACACTCAGTTTTTTCACTCTTCAACCCTTCAGAGGCGGAGGAGAAATAAGATAGTGAAGCTTAGGGATGAGAATGGGAACTGGGTGGAGAGTCCGTCTCAGGTGCGCCAATTGGTGGATAATCACTTCACTTCAGTTTTTAGCTCGGCAGGGGACCGCAATTGGGGGTCGTTGCTAGATTGCATTAATCCCTCGGTTTCGCCAGATATGAATGAGGCGCTAATTGCACCAATCACGGAAGAGGAGATAAAGGTGGCGGCTGGGAGTATGGGAGGGCTAAAGGCTCCTGGCCCCGATGGTTTCCAGGGGATCTTTTATCAGACATACTGGGAGATTGTGAGGGAGGGTGTTTCTGCTTTAGTTAGAGATTTGATTCAGGATGCGGCGGGTTCGAGTTTGATTAATCAGACCCATGTGGTGCTGATTCCCAAAGTCCCGAATCCGGAAGTTGTGTCGCAATTCAGGCCGATTAGCCTGTGCAACTACTCGTACAAAATCCTGTCAAAGATTCTTGCTAACCGGTTGAAGGTATTATTACCTAAAATTATCTCTCCTTCTCAAAATGCTTTTGTGGCGGGTAGACAAATTCAGGATTGCATTGGCATAGCGCATGAGATGTTTCATTATTTGAAGGGAAGGAAAGCTCGGAATAGATTGGAAATGGGGATTAAACTTGATATGCAGAAGGCGTATGATAGGGTTGAATGGGATTTTTTGAATCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

302

Amino Acids

34.56

Weight (kDa)

9.0

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 138
AccB7I CCANNNNNTGG 1 cut(s) 295
AccI GTMKAC 1 cut(s) 760
AccIII TCCGGA 1 cut(s) 622
AciI CCGC 8 cut(s) 55, 100, 217, 337, 437, 563, 566, 755
AclWI GGATC 4 cut(s) 13, 26, 33, 497
AcsI RAATTY 1 cut(s) 765
AcuI CTGAAG 2 cut(s) 194, 297
AfaI GTAC 1 cut(s) 671
AfiI CCNNNNNNNGG 5 cut(s) 213, 295, 343, 622, 706
AgeI ACCGGT 1 cut(s) 699
AgsI TTSAA 5 cut(s) 204, 706, 811, 884, 898
AjnI CCWGG 3 cut(s) 21, 466, 483
AluBI AGCT 4 cut(s) 112, 241, 324, 824
AluI AGCT 4 cut(s) 112, 241, 324, 824
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 4 cut(s) 13, 26, 33, 497
Aor13HI TCCGGA 1 cut(s) 622
AoxI GGCC 2 cut(s) 469, 644
ApoI RAATTY 1 cut(s) 765
AseI ATTAAT 2 cut(s) 366, 582
AsiGI ACCGGT 1 cut(s) 699
AspLEI GCGC 3 cut(s) 288, 400, 790
AspS9I GGNCC 3 cut(s) 65, 334, 470
AvaII GGWCC 2 cut(s) 65, 334
BamHI GGATCC 1 cut(s) 18
BanI GGYRCC 1 cut(s) 138
BccI CCATC 1 cut(s) 470
BciT130I CCWGG 3 cut(s) 23, 468, 485
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 2 cut(s) 96, 356
BfoI RGCGCY 1 cut(s) 401
BisI GCNGC 2 cut(s) 438, 564
BlsI GCNGC 2 cut(s) 439, 565
Bme1390I CCNGG 3 cut(s) 23, 468, 485
Bme18I GGWCC 2 cut(s) 65, 334
BmgT120I GGNCC 3 cut(s) 65, 334, 470
BmiI GGNNCC 6 cut(s) 20, 66, 140, 335, 465, 472
BmrFI CCNGG 3 cut(s) 23, 468, 485
BmrI ACTGGG 4 cut(s) 31, 70, 271, 517
BmsI GCATC 2 cut(s) 166, 550
BmuI ACTGGG 4 cut(s) 31, 70, 271, 517
BplI GAGNNNNNCTC 2 cut(s) 262, 294
BpmI CTGGAG 1 cut(s) 35
Bpu10I CCTNAGC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 372, 484
BsaWI WCCGGW 2 cut(s) 622, 699
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 5 cut(s) 213, 295, 343, 622, 706
Bse118I RCCGGY 1 cut(s) 699
Bse1I ACTGG 4 cut(s) 37, 65, 266, 512
BseAI TCCGGA 1 cut(s) 622
BseBI CCWGG 3 cut(s) 23, 468, 485
BseDI CCNNGG 2 cut(s) 372, 484
BseGI GGATG 3 cut(s) 181, 253, 565
BseLI CCNNNNNNNGG 5 cut(s) 213, 295, 343, 622, 706
BseMII CTCAG 2 cut(s) 200, 293
BseNI ACTGG 4 cut(s) 37, 65, 266, 512
BseRI GAGGAG 3 cut(s) 140, 235, 437
BseYI CCCAGC 1 cut(s) 440
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 2 cut(s) 471, 646
BshNI GGYRCC 1 cut(s) 138
BshTI ACCGGT 1 cut(s) 699
BsiEI CGRYCG 1 cut(s) 149
BsiSI CCGG 2 cut(s) 623, 700
BslFI GGGAC 4 cut(s) 71, 78, 347, 599
BslI CCNNNNNNNGG 5 cut(s) 213, 295, 343, 622, 706
BsmAI GTCTC 1 cut(s) 282
BsmBI CGTCTC 1 cut(s) 282
BsmFI GGGAC 4 cut(s) 71, 78, 347, 599
BsnI GGCC 2 cut(s) 471, 646
Bsp13I TCCGGA 1 cut(s) 622
Bsp143I GATC 4 cut(s) 18, 25, 146, 489
BspACI CCGC 8 cut(s) 55, 100, 217, 337, 437, 563, 566, 755
BspANI GGCC 2 cut(s) 471, 646
BspCNI CTCAG 2 cut(s) 199, 292
BspEI TCCGGA 1 cut(s) 622
BspLI GGNNCC 6 cut(s) 20, 66, 140, 335, 465, 472
BspPI GGATC 4 cut(s) 13, 26, 33, 497
BspT107I GGYRCC 1 cut(s) 138
BsrFI RCCGGY 1 cut(s) 699
BsrI ACTGG 4 cut(s) 37, 65, 266, 512
BssAI RCCGGY 1 cut(s) 699
BssECI CCNNGG 2 cut(s) 372, 484
BssMI GATC 4 cut(s) 18, 25, 146, 489
Bst2UI CCWGG 3 cut(s) 23, 468, 485
Bst6I CTCTTC 2 cut(s) 205, 414
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 4 cut(s) 113, 186, 242, 279
BstF5I GGATG 3 cut(s) 181, 253, 565
BstH2I RGCGCY 1 cut(s) 401
BstHHI GCGC 3 cut(s) 288, 400, 790
BstKTI GATC 4 cut(s) 21, 28, 149, 492
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 4 cut(s) 18, 25, 146, 489
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 3 cut(s) 404, 643, 752
BstNI CCWGG 3 cut(s) 23, 468, 485
BstSCI CCNGG 3 cut(s) 21, 466, 483
BstX2I RGATCY 3 cut(s) 18, 25, 489
BstYI RGATCY 3 cut(s) 18, 25, 489
BsuRI GGCC 2 cut(s) 471, 646
BtsCI GGATG 3 cut(s) 181, 253, 565
Cac8I GCNNGC 1 cut(s) 143
CfoI GCGC 3 cut(s) 288, 400, 790
Cfr10I RCCGGY 1 cut(s) 699
Cfr13I GGNCC 3 cut(s) 65, 334, 470
Csp6I GTAC 1 cut(s) 670
CspAI ACCGGT 1 cut(s) 699
CviAII CATG 2 cut(s) 593, 791
CviQI GTAC 1 cut(s) 670
DdeI CTNAG 4 cut(s) 113, 186, 242, 279
DpnI GATC 4 cut(s) 20, 27, 148, 491
DpnII GATC 4 cut(s) 18, 25, 146, 489
Eam1104I CTCTTC 2 cut(s) 205, 414
EarI CTCTTC 2 cut(s) 205, 414
EciI GGCGGA 2 cut(s) 115, 232
Eco47I GGWCC 2 cut(s) 65, 334
Eco57I CTGAAG 2 cut(s) 194, 297
EcoRII CCWGG 3 cut(s) 21, 466, 483
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 2 cut(s) 596, 794
FaiI YATR 9 cut(s) 75, 389, 449, 505, 594, 785, 792, 860, 873
FaqI GGGAC 4 cut(s) 71, 78, 347, 599
FatI CATG 2 cut(s) 592, 790
FauI CCCGC 3 cut(s) 48, 559, 748
FblI GTMKAC 1 cut(s) 760
Fnu4HI GCNGC 2 cut(s) 438, 564
FokI GGATG 3 cut(s) 188, 260, 572
Fsp4HI GCNGC 2 cut(s) 438, 564
FspBI CTAG 2 cut(s) 96, 356
GlaI GCGC 3 cut(s) 287, 399, 789
GluI GCNGC 2 cut(s) 438, 564
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 401
HaeIII GGCC 2 cut(s) 471, 646
HapII CCGG 2 cut(s) 623, 700
HhaI GCGC 3 cut(s) 288, 400, 790
Hin1II CATG 2 cut(s) 596, 794
Hin6I GCGC 3 cut(s) 286, 398, 788
HinP1I GCGC 3 cut(s) 286, 398, 788
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 7 cut(s) 117, 271, 553, 604, 619, 688, 898
HpaII CCGG 2 cut(s) 623, 700
Hpy166II GTNNAC 1 cut(s) 761
Hpy188I TCNGA 4 cut(s) 213, 501, 588, 828
Hpy188III TCNNGA 4 cut(s) 557, 616, 623, 770
Hpy8I GTNNAC 1 cut(s) 761
HpyAV CCTTC 6 cut(s) 218, 700, 744, 805, 810, 859
HpyCH4V TGCA 5 cut(s) 363, 407, 660, 777, 862
HpyF10VI GCNNNNNNNGC 3 cut(s) 404, 643, 752
HpyF3I CTNAG 4 cut(s) 113, 186, 242, 279
Hsp92II CATG 2 cut(s) 596, 794
HspAI GCGC 3 cut(s) 286, 398, 788
Kpn2I TCCGGA 1 cut(s) 622
Kzo9I GATC 4 cut(s) 18, 25, 146, 489
LmnI GCTCC 2 cut(s) 54, 469
LweI GCATC 2 cut(s) 166, 550
MaeI CTAG 2 cut(s) 96, 356
MalI GATC 4 cut(s) 20, 27, 148, 491
MboI GATC 4 cut(s) 18, 25, 146, 489
MboII GAAGA 3 cut(s) 20, 192, 431
MfeI CAATTG 2 cut(s) 290, 340
MflI RGATCY 3 cut(s) 18, 25, 489
MluCI AATT 6 cut(s) 290, 340, 402, 638, 723, 765
MlyI GAGTC 2 cut(s) 111, 280
MmeI TCCRAC 1 cut(s) 21
MroI TCCGGA 1 cut(s) 622
MseI TTAA 4 cut(s) 366, 582, 849, 904
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 2 cut(s) 623, 700
MspR9I CCNGG 3 cut(s) 23, 468, 485
MunI CAATTG 2 cut(s) 290, 340
MvaI CCWGG 3 cut(s) 23, 468, 485
MwoI GCNNNNNNNGC 3 cut(s) 404, 643, 752
NdeII GATC 4 cut(s) 18, 25, 146, 489
NlaIII CATG 2 cut(s) 596, 794
NlaIV GGNNCC 6 cut(s) 20, 66, 140, 335, 465, 472
NmeAIII GCCGAG 1 cut(s) 305
PfeI GAWTC 5 cut(s) 553, 604, 619, 688, 898
PflMI CCANNNNNTGG 1 cut(s) 295
PfoI TCCNGGA 1 cut(s) 21
PinAI ACCGGT 1 cut(s) 699
PkrI GCNGC 2 cut(s) 439, 565
Ple19I CGATCG 1 cut(s) 149
PleI GAGTC 2 cut(s) 111, 279
PpsI GAGTC 2 cut(s) 111, 279
PshBI ATTAAT 2 cut(s) 366, 582
Psp6I CCWGG 3 cut(s) 21, 466, 483
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 3 cut(s) 21, 466, 483
PspN4I GGNNCC 6 cut(s) 20, 66, 140, 335, 465, 472
PspPI GGNCC 3 cut(s) 65, 334, 470
PsuI RGATCY 3 cut(s) 18, 25, 489
PvuI CGATCG 1 cut(s) 149
RsaI GTAC 1 cut(s) 671
RsaNI GTAC 1 cut(s) 670
SaqAI TTAA 4 cut(s) 366, 582, 849, 904
SatI GCNGC 2 cut(s) 438, 564
Sau3AI GATC 4 cut(s) 18, 25, 146, 489
Sau96I GGNCC 3 cut(s) 65, 334, 470
SchI GAGTC 2 cut(s) 111, 280
ScrFI CCNGG 3 cut(s) 23, 468, 485
SetI ASST 9 cut(s) 13, 114, 243, 285, 326, 435, 711, 721, 826
SfaNI GCATC 2 cut(s) 166, 550
SinI GGWCC 2 cut(s) 65, 334
Sse9I AATT 6 cut(s) 290, 340, 402, 638, 723, 765
SsiI CCGC 8 cut(s) 55, 100, 217, 337, 437, 563, 566, 755
SspMI CTAG 2 cut(s) 96, 356
StyD4I CCNGG 3 cut(s) 21, 466, 483
TaqI TCGA 2 cut(s) 149, 572
TasI AATT 6 cut(s) 290, 340, 402, 638, 723, 765
TauI GCSGC 2 cut(s) 440, 566
TfiI GAWTC 5 cut(s) 553, 604, 619, 688, 898
Tru1I TTAA 4 cut(s) 366, 582, 849, 904
Tru9I TTAA 4 cut(s) 366, 582, 849, 904
TspDTI ATGAA 2 cut(s) 404, 791
TspGWI ACGGA 2 cut(s) 264, 431
Van91I CCANNNNNTGG 1 cut(s) 295
VpaK11BI GGWCC 2 cut(s) 65, 334
VspI ATTAAT 2 cut(s) 366, 582
XapI RAATTY 1 cut(s) 765
XmiI GTMKAC 1 cut(s) 760
XspI CTAG 2 cut(s) 96, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.