Rh7AG442000

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000147
Physical Location & Seq
Forward (+)
59985788 .. 59997669
11882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG442000.1

Sequence Viewer

Length: 489 bp
ATGTGGCCTCTTGAAAAATGGGGAGGTGCTGCCCCCCACCGTTGGAGAATGAAGTTATTTCAAAACTTTATCAACAATGCTCATTTTCGAGACCTCCATTATCAAGGCCCCCACTTTACCTGGTTTTCCATTCAGAATAACAAGGTTGTCATGAAAGAGCGTCTCAATAGAGCATTTGGCAATCCTGCTTGGTGCTCTGCACAGAGTCAGACTCAAGTTTTCCACTTGGCTAAAATAGGGTCCGATCACCACCCTATTCTGATTGACACTTCTCCGGATGAACTGAAAGGCAAGAAAACATTTCGGTTTGAACAGTTTTGGACTACCCATGCTTATTGTTCTTCTGTTATTAAGAATGCTTGGCTCCCTGTTGCATCTCCCTTACCAATGACCACTTGGTCAGCCAACCTTGATAGATGCCGCAAGTCCTTAAAAGCCCGAAGCAAGAATGCTTTCCTCAATTCTCAAGACCAGATTAAACATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

162

Amino Acids

18.92

Weight (kDa)

10.07

Isoelectric Point (pI)

27.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 397
AccIII TCCGGA 1 cut(s) 274
AciI CCGC 1 cut(s) 421
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 3 cut(s) 14, 62, 311
AjnI CCWGG 1 cut(s) 119
Alw21I GWGCWC 1 cut(s) 197
Alw26I GTCTC 2 cut(s) 84, 167
Aor13HI TCCGGA 1 cut(s) 274
AoxI GGCC 2 cut(s) 5, 106
ApeKI GCWGC 1 cut(s) 29
Asp700I GAANNNNTTC 1 cut(s) 452
AspS9I GGNCC 2 cut(s) 107, 240
AsuHPI GGTGA 1 cut(s) 239
AvaII GGWCC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 84, 167
BisI GCNGC 2 cut(s) 30, 421
BlsI GCNGC 2 cut(s) 31, 422
Bme1390I CCNGG 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 2 cut(s) 107, 240
BmiI GGNNCC 3 cut(s) 109, 241, 365
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 2 cut(s) 383, 407
BplI GAGNNNNNCTC 2 cut(s) 196, 228
BpuEI CTTGAG 2 cut(s) 198, 450
BsaI GGTCTC 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 274
Bsc4I CCNNNNNNNGG 1 cut(s) 42
BseAI TCCGGA 1 cut(s) 274
BseBI CCWGG 1 cut(s) 121
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 16
BsgI GTGCAG 1 cut(s) 183
BshFI GGCC 2 cut(s) 7, 108
BsiHKAI GWGCWC 1 cut(s) 197
BsiSI CCGG 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 42
BsmAI GTCTC 2 cut(s) 84, 167
BsmBI CGTCTC 1 cut(s) 167
BsmI GAATGC 2 cut(s) 361, 454
BsnI GGCC 2 cut(s) 7, 108
Bso31I GGTCTC 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 197
Bsp13I TCCGGA 1 cut(s) 274
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 1 cut(s) 421
BspANI GGCC 2 cut(s) 7, 108
BspEI TCCGGA 1 cut(s) 274
BspHI TCATGA 1 cut(s) 150
BspLI GGNNCC 3 cut(s) 109, 241, 365
BspTNI GGTCTC 1 cut(s) 84
BssMI GATC 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 2 cut(s) 41, 315
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 2 cut(s) 84, 167
BstMBI GATC 1 cut(s) 244
BstNI CCWGG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 16
BsuRI GGCC 2 cut(s) 7, 108
BtsCI GGATG 1 cut(s) 283
CciI TCATGA 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 107, 240
CseI GACGC 1 cut(s) 149
CsiI ACCWGGT 1 cut(s) 119
CviAII CATG 4 cut(s) 151, 329, 482, 486
CviJI RGCY 6 cut(s) 7, 108, 230, 364, 404, 437
CviKI_1 RGCY 6 cut(s) 7, 108, 230, 364, 404, 437
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
DrdI GACNNNNNNGTC 1 cut(s) 397
DseDI GACNNNNNNGTC 1 cut(s) 397
Eco31I GGTCTC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 119
EcoT22I ATGCAT 1 cut(s) 487
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 4 cut(s) 154, 332, 485, 489
FaiI YATR 4 cut(s) 152, 330, 483, 487
FatI CATG 4 cut(s) 150, 328, 481, 485
Fnu4HI GCNGC 2 cut(s) 30, 421
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 2 cut(s) 30, 421
GluI GCNGC 2 cut(s) 30, 421
HaeIII GGCC 2 cut(s) 7, 108
HapII CCGG 1 cut(s) 275
HgaI GACGC 1 cut(s) 149
Hin1II CATG 4 cut(s) 154, 332, 485, 489
HinfI GANTC 2 cut(s) 205, 211
HpaII CCGG 1 cut(s) 275
HphI GGTGA 1 cut(s) 239
Hpy188I TCNGA 4 cut(s) 135, 210, 244, 261
Hpy188III TCNNGA 5 cut(s) 11, 89, 151, 275, 467
HpyCH4III ACNGT 2 cut(s) 41, 315
HpyCH4V TGCA 3 cut(s) 200, 374, 485
Hsp92II CATG 4 cut(s) 154, 332, 485, 489
Kpn2I TCCGGA 1 cut(s) 274
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 1 cut(s) 369
LpnPI CCDG 6 cut(s) 106, 133, 198, 288, 381, 485
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 383, 407
MabI ACCWGGT 1 cut(s) 119
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 1 cut(s) 333
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 1 cut(s) 460
MlyI GAGTC 2 cut(s) 205, 214
MmeI TCCRAC 1 cut(s) 23
MnlI CCTC 4 cut(s) 17, 18, 104, 467
Mph1103I ATGCAT 1 cut(s) 487
MroI TCCGGA 1 cut(s) 274
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 3 cut(s) 351, 431, 477
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 121
Mva1269I GAATGC 2 cut(s) 361, 454
MvaI CCWGG 1 cut(s) 121
NdeII GATC 1 cut(s) 244
NlaIII CATG 4 cut(s) 154, 332, 485, 489
NlaIV GGNNCC 3 cut(s) 109, 241, 365
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 1 cut(s) 485
PagI TCATGA 1 cut(s) 150
PctI GAATGC 2 cut(s) 361, 454
PdmI GAANNNNTTC 1 cut(s) 452
PkrI GCNGC 2 cut(s) 31, 422
PleI GAGTC 2 cut(s) 205, 213
PpsI GAGTC 2 cut(s) 205, 213
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 3 cut(s) 109, 241, 365
PspPI GGNCC 2 cut(s) 107, 240
SaqAI TTAA 3 cut(s) 351, 431, 477
SatI GCNGC 2 cut(s) 30, 421
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 2 cut(s) 107, 240
SchI GAGTC 2 cut(s) 205, 214
ScrFI CCNGG 1 cut(s) 121
SduI GDGCHC 1 cut(s) 197
SetI ASST 5 cut(s) 28, 96, 122, 147, 411
SexAI ACCWGGT 1 cut(s) 119
SfaNI GCATC 2 cut(s) 383, 407
SinI GGWCC 1 cut(s) 240
SmlI CTYRAG 2 cut(s) 213, 465
SmoI CTYRAG 2 cut(s) 213, 465
Sse9I AATT 1 cut(s) 460
SsiI CCGC 1 cut(s) 421
StyD4I CCNGG 1 cut(s) 119
TaaI ACNGT 2 cut(s) 41, 315
TaqI TCGA 1 cut(s) 88
TasI AATT 1 cut(s) 460
TauI GCSGC 1 cut(s) 423
Tru1I TTAA 3 cut(s) 351, 431, 477
Tru9I TTAA 3 cut(s) 351, 431, 477
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 3 cut(s) 65, 167, 294
VpaK11BI GGWCC 1 cut(s) 240
XceI RCATGY 1 cut(s) 485
XcmI CCANNNNNNNNNTGG 1 cut(s) 393
XmnI GAANNNNTTC 1 cut(s) 452
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.