FvH4_4g30261

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000147
Physical Location & Seq
Reverse (-)
29979339 .. 29983096
3758 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30261.t1

Sequence Viewer

Length: 999 bp
ATGGTTACTTTTGTTTATGCCTACCCCAAAAAAGAAAAACAAGCTGCCTTGTGGAATGATCTTTCTCTGCTCAGCCCAACTGATAACTCTAGTTGGGTACTTATGGGGGATTTTAATATCATAATTTCTCCTGAGGAAAAACTTGGAGGAATTGGTGGTGTTTCAAACTTTATGCTGAATTTTAGTACTTTTCTGAATAATAATGGCTTAGTTTCTCTCCAAGCTACTGGTTTACCTTTCACTTGGACAAATAAACATGTTGATGACACTGTTATATTTGAAAGACTGGATAGGGCAGTCTCTAATGCCAATTTCCTTCTCAACTATCCAGATTCAAGGCTAGAAAATTTACCTATTATCTCTTCTGATCATGGTCCAATTTGTCTCACCTTGGAAAACCCGAAAAGGAAAAGCAGACAATTTGCTAGTAGGGCAAGGATTTGGAACAAATCTGTTTTTGGGAACATCTTCAGAAGAATGGAGGAACTCAACCAAGAGAGTGAAGAAATTCAACAGCAGTTAATGGCCAATCCTAACTCAACTTTTCTGAAACAAAAAGATACCCAAATAAGAGCTGAGTTGCTAGAGATCTGGAAACAAGAGGAGCAGGTCACGGAAGAAGAGATCTTTGCTGCTGTCAATTCGATTGGAGCTCTTAAGGCTCCTGCTTCTTCCAATTTTGGAATTACCACAATCTCAGTTGCAGAAGCTCTTTCACTCCGAAACAGCCTCATTTGTGCCAAGGAGAGAGGCTTGTCCAGAGTGGAGGTTGAAGGAGATTCGAAACTTGTCATCGATGCAGTGAATGGCATTGCTGCTTCACCTTGGAGGATCCTCAAGCTAGTTCAAGAAATTAGATGTTTGAGGAACTCGTTTGATTTTATTAGTTTCAAGCATATTTTTAGAGAGGCCAATTTTGTAGCTAATGCTGTCGCAAATGTTGGCCACAAAGTAGGAGATGTTTGCTTTTGGGAGGAGTGTGTTCCTCCGGGAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

333

Amino Acids

37.25

Weight (kDa)

5.58

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 230 - 313 3.2e-16 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 598
AclWI GGATC 2 cut(s) 826, 839
AcoI YGGCCR 2 cut(s) 525, 943
AcsI RAATTY 3 cut(s) 178, 346, 507
AcuI CTGAAG 1 cut(s) 454
AfaI GTAC 2 cut(s) 99, 187
AflII CTTAAG 1 cut(s) 656
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 7 cut(s) 165, 281, 336, 512, 773, 848, 892
AluBI AGCT 8 cut(s) 44, 224, 575, 653, 710, 841, 923, 996
AluI AGCT 8 cut(s) 44, 224, 575, 653, 710, 841, 923, 996
Alw21I GWGCWC 1 cut(s) 655
Alw26I GTCTC 2 cut(s) 304, 389
AlwI GGATC 2 cut(s) 826, 839
AoxI GGCC 3 cut(s) 525, 909, 943
ApeKI GCWGC 3 cut(s) 44, 632, 815
ApoI RAATTY 3 cut(s) 178, 346, 507
Asp700I GAANNNNTTC 2 cut(s) 467, 507
AspS9I GGNCC 1 cut(s) 374
AsuC2I CCSGG 1 cut(s) 990
AsuHPI GGTGA 2 cut(s) 379, 813
AsuII TTCGAA 1 cut(s) 782
AvaII GGWCC 1 cut(s) 374
AxyI CCTNAGG 1 cut(s) 132
BalI TGGCCA 2 cut(s) 527, 945
BamHI GGATCC 1 cut(s) 831
BanII GRGCYC 1 cut(s) 655
Bbv12I GWGCWC 1 cut(s) 655
BbvI GCAGC 3 cut(s) 31, 619, 802
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 1 cut(s) 990
BcoDI GTCTC 2 cut(s) 304, 389
BfaI CTAG 6 cut(s) 90, 341, 426, 584, 842, 997
BfrI CTTAAG 1 cut(s) 656
BfuAI ACCTGC 1 cut(s) 598
BglII AGATCT 2 cut(s) 588, 624
BisI GCNGC 3 cut(s) 45, 633, 816
BlpI GCTNAGC 1 cut(s) 71
BlsI GCNGC 3 cut(s) 46, 634, 817
BmcAI AGTACT 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 990
Bme18I GGWCC 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 374
BmiI GGNNCC 2 cut(s) 663, 833
BmrFI CCNGG 1 cut(s) 990
BmsI GCATC 1 cut(s) 787
Bpu1102I GCTNAGC 1 cut(s) 71
Bpu14I TTCGAA 1 cut(s) 782
BpuEI CTTGAG 1 cut(s) 821
BpuMI CCSGG 1 cut(s) 990
Bsa29I ATCGAT 1 cut(s) 795
BsaJI CCNNGG 3 cut(s) 390, 741, 824
Bse1I ACTGG 2 cut(s) 232, 291
Bse21I CCTNAGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 810
BseCI ATCGAT 1 cut(s) 795
BseDI CCNNGG 3 cut(s) 390, 741, 824
BseMI GCAATG 1 cut(s) 810
BseMII CTCAG 4 cut(s) 85, 123, 567, 711
BseNI ACTGG 2 cut(s) 232, 291
BseRI GAGGAG 2 cut(s) 617, 989
BseXI GCAGC 3 cut(s) 31, 619, 802
BshFI GGCC 3 cut(s) 527, 911, 945
BshVI ATCGAT 1 cut(s) 795
BsiHKAI GWGCWC 1 cut(s) 655
BsiSI CCGG 1 cut(s) 989
BsmAI GTCTC 2 cut(s) 304, 389
BsnI GGCC 3 cut(s) 527, 911, 945
Bsp119I TTCGAA 1 cut(s) 782
Bsp1286I GDGCHC 1 cut(s) 655
Bsp143I GATC 5 cut(s) 58, 367, 588, 624, 831
Bsp1720I GCTNAGC 1 cut(s) 71
BspANI GGCC 3 cut(s) 527, 911, 945
BspCNI CTCAG 4 cut(s) 84, 124, 568, 710
BspDI ATCGAT 1 cut(s) 795
BspLI GGNNCC 2 cut(s) 663, 833
BspMI ACCTGC 1 cut(s) 598
BspPI GGATC 2 cut(s) 826, 839
BspT104I TTCGAA 1 cut(s) 782
BspTI CTTAAG 1 cut(s) 656
BsrDI GCAATG 1 cut(s) 810
BsrI ACTGG 2 cut(s) 232, 291
BssECI CCNNGG 3 cut(s) 390, 741, 824
BssMI GATC 5 cut(s) 58, 367, 588, 624, 831
BssT1I CCWWGG 3 cut(s) 390, 741, 824
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 2 cut(s) 367, 615
BstAFI CTTAAG 1 cut(s) 656
BstBI TTCGAA 1 cut(s) 782
BstDEI CTNAG 5 cut(s) 71, 132, 208, 576, 697
BstKTI GATC 5 cut(s) 61, 370, 591, 627, 834
BstMAI GTCTC 2 cut(s) 304, 389
BstMBI GATC 5 cut(s) 58, 367, 588, 624, 831
BstMWI GCNNNNNNNGC 2 cut(s) 431, 659
BstNSI RCATGY 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 988
BstV1I GCAGC 3 cut(s) 31, 619, 802
BstX2I RGATCY 3 cut(s) 588, 624, 831
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 3 cut(s) 588, 624, 831
Bsu15I ATCGAT 1 cut(s) 795
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 3 cut(s) 527, 911, 945
BsuTUI ATCGAT 1 cut(s) 795
BtsI GCAGTG 1 cut(s) 807
BtsIMutI CAGTG 2 cut(s) 267, 807
BveI ACCTGC 1 cut(s) 598
Cfr13I GGNCC 1 cut(s) 374
ClaI ATCGAT 1 cut(s) 795
Csp6I GTAC 2 cut(s) 98, 186
CviAII CATG 2 cut(s) 257, 371
CviQI GTAC 2 cut(s) 98, 186
DdeI CTNAG 5 cut(s) 71, 132, 208, 576, 697
DpnI GATC 5 cut(s) 60, 369, 590, 626, 833
DpnII GATC 5 cut(s) 58, 367, 588, 624, 831
EaeI YGGCCR 2 cut(s) 525, 943
Eam1104I CTCTTC 2 cut(s) 367, 615
EarI CTCTTC 2 cut(s) 367, 615
Ecl136II GAGCTC 1 cut(s) 653
Eco130I CCWWGG 3 cut(s) 390, 741, 824
Eco24I GRGCYC 1 cut(s) 655
Eco47I GGWCC 1 cut(s) 374
Eco53kI GAGCTC 1 cut(s) 653
Eco57I CTGAAG 1 cut(s) 454
Eco81I CCTNAGG 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 653
EcoT14I CCWWGG 3 cut(s) 390, 741, 824
EcoT38I GRGCYC 1 cut(s) 655
ErhI CCWWGG 3 cut(s) 390, 741, 824
FaeI CATG 2 cut(s) 260, 374
FaiI YATR 8 cut(s) 18, 104, 122, 173, 258, 275, 372, 897
FatI CATG 2 cut(s) 256, 370
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 3 cut(s) 45, 633, 816
FriOI GRGCYC 1 cut(s) 655
Fsp4HI GCNGC 3 cut(s) 45, 633, 816
FspBI CTAG 6 cut(s) 90, 341, 426, 584, 842, 997
GluI GCNGC 3 cut(s) 45, 633, 816
HaeIII GGCC 3 cut(s) 527, 911, 945
HapII CCGG 1 cut(s) 989
Hin1II CATG 2 cut(s) 260, 374
HinfI GANTC 2 cut(s) 332, 779
HpaII CCGG 1 cut(s) 989
HphI GGTGA 2 cut(s) 379, 813
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 5 cut(s) 195, 367, 473, 549, 722
Hpy188III TCNNGA 5 cut(s) 131, 329, 592, 759, 848
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 326, 767
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4V TGCA 2 cut(s) 704, 800
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 659
HpyF3I CTNAG 5 cut(s) 71, 132, 208, 576, 697
Hsp92II CATG 2 cut(s) 260, 374
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 5 cut(s) 58, 367, 588, 624, 831
LmnI GCTCC 3 cut(s) 604, 650, 667
LpnPI CCDG 8 cut(s) 144, 213, 272, 342, 577, 593, 678, 772
Lsp1109I GCAGC 3 cut(s) 31, 619, 802
LweI GCATC 1 cut(s) 787
MaeI CTAG 6 cut(s) 90, 341, 426, 584, 842, 997
MaeIII GTNAC 2 cut(s) 4, 610
MalI GATC 5 cut(s) 60, 369, 590, 626, 833
MboI GATC 5 cut(s) 58, 367, 588, 624, 831
MboII GAAGA 7 cut(s) 354, 460, 486, 515, 629, 632, 663
MflI RGATCY 3 cut(s) 588, 624, 831
MhlI GDGCHC 1 cut(s) 655
MlsI TGGCCA 2 cut(s) 527, 945
MluNI TGGCCA 2 cut(s) 527, 945
Mox20I TGGCCA 2 cut(s) 527, 945
MroXI GAANNNNTTC 2 cut(s) 467, 507
MscI TGGCCA 2 cut(s) 527, 945
MseI TTAA 3 cut(s) 114, 521, 657
MslI CAYNNNNRTG 1 cut(s) 261
Msp20I TGGCCA 2 cut(s) 527, 945
MspCI CTTAAG 1 cut(s) 656
MspI CCGG 1 cut(s) 989
MspR9I CCNGG 1 cut(s) 990
MwoI GCNNNNNNNGC 2 cut(s) 431, 659
NciI CCSGG 1 cut(s) 990
NdeII GATC 5 cut(s) 58, 367, 588, 624, 831
NlaIII CATG 2 cut(s) 260, 374
NlaIV GGNNCC 2 cut(s) 663, 833
NmuCI GTSAC 1 cut(s) 610
NspI RCATGY 1 cut(s) 260
NspV TTCGAA 1 cut(s) 782
PciI ACATGT 1 cut(s) 256
PdmI GAANNNNTTC 2 cut(s) 467, 507
PfeI GAWTC 2 cut(s) 332, 779
PfoI TCCNGGA 1 cut(s) 988
PkrI GCNGC 3 cut(s) 46, 634, 817
PscI ACATGT 1 cut(s) 256
Psp124BI GAGCTC 1 cut(s) 655
PspN4I GGNNCC 2 cut(s) 663, 833
PspPI GGNCC 1 cut(s) 374
PsuI RGATCY 3 cut(s) 588, 624, 831
RsaI GTAC 2 cut(s) 99, 187
RsaNI GTAC 2 cut(s) 98, 186
RseI CAYNNNNRTG 1 cut(s) 261
SacI GAGCTC 1 cut(s) 655
SaqAI TTAA 3 cut(s) 114, 521, 657
SatI GCNGC 3 cut(s) 45, 633, 816
Sau3AI GATC 5 cut(s) 58, 367, 588, 624, 831
Sau96I GGNCC 1 cut(s) 374
ScaI AGTACT 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 990
SduI GDGCHC 1 cut(s) 655
SfaNI GCATC 1 cut(s) 787
SfuI TTCGAA 1 cut(s) 782
SinI GGWCC 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 2 cut(s) 656, 836
SmoI CTYRAG 2 cut(s) 656, 836
SspMI CTAG 6 cut(s) 90, 341, 426, 584, 842, 997
SstI GAGCTC 1 cut(s) 655
StyD4I CCNGG 1 cut(s) 988
StyI CCWWGG 3 cut(s) 390, 741, 824
TaaI ACNGT 1 cut(s) 271
TaqI TCGA 3 cut(s) 644, 782, 795
TatI WGTACW 1 cut(s) 185
TfiI GAWTC 2 cut(s) 332, 779
Tru1I TTAA 3 cut(s) 114, 521, 657
Tru9I TTAA 3 cut(s) 114, 521, 657
TscAI CASTG 2 cut(s) 274, 807
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 3 cut(s) 44, 632, 815
Tsp45I GTSAC 1 cut(s) 610
TspGWI ACGGA 1 cut(s) 629
TspRI CASTG 2 cut(s) 274, 807
Vha464I CTTAAG 1 cut(s) 656
VpaK11BI GGWCC 1 cut(s) 374
XapI RAATTY 3 cut(s) 178, 346, 507
XceI RCATGY 1 cut(s) 260
XmnI GAANNNNTTC 2 cut(s) 467, 507
XspI CTAG 6 cut(s) 90, 341, 426, 584, 842, 997
ZrmI AGTACT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.